RNA–Protein interactions for RNA: ENST00000589447.1

LINC01539-203, Transcript of long intergenic non-protein coding RNA 1539, humanhuman

TSL 4

Gene LINC01539, Length 575 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01539-203ENST00000589447 AEBP2Q6ZN18 517 aaPredicted RBP9.49□□□□□ -0.89
LINC01539-203ENST00000589447 CHIC1Q5VXU3 224 aa9.17□□□□□ -0.94
LINC01539-203ENST00000589447 SENP3Q9H4L4 574 aaPredicted RBP8.21□□□□□ -1.1
LINC01539-203ENST00000589447 PHF23Q9BUL5 403 aaPredicted RBP8.01□□□□□ -1.13
LINC01539-203ENST00000589447 FOXD1Q16676 465 aa7.54□□□□□ -1.2
LINC01539-203ENST00000589447 PLPPR3Q6T4P5 718 aa7.39□□□□□ -1.23
LINC01539-203ENST00000589447 POTEDQ86YR6 584 aa7.27□□□□□ -1.25
LINC01539-203ENST00000589447 MSH5O43196 834 aa7.14□□□□□ -1.27
LINC01539-203ENST00000589447 PIAS4Q8N2W9 510 aaPredicted RBP7.1□□□□□ -1.27
LINC01539-203ENST00000589447 PPP6R1Q9UPN7 881 aa7.04□□□□□ -1.28
LINC01539-203ENST00000589447 ADRA2BP18089 450 aa7.02□□□□□ -1.29
LINC01539-203ENST00000589447 NISCHQ9Y2I1 1504 aa6.84□□□□□ -1.31
LINC01539-203ENST00000589447 SCAF1Q9H7N4 1312 aaKnown RBP6.57□□□□□ -1.36
LINC01539-203ENST00000589447 DMRT2Q9Y5R5 561 aa6.5□□□□□ -1.37
LINC01539-203ENST00000589447 SLC24A1O60721 1099 aa6.47□□□□□ -1.37
LINC01539-203ENST00000589447 PPP4R3CPQ6ZMV5 832 aa6.42□□□□□ -1.38
LINC01539-203ENST00000589447 MAPK8IP2Q13387 824 aaPredicted RBP6.39□□□□□ -1.39
LINC01539-203ENST00000589447 CNKSR2Q8WXI2 1034 aa6.34□□□□□ -1.39
LINC01539-203ENST00000589447 EHMT2Q96KQ7 1210 aa6.31□□□□□ -1.4
LINC01539-203ENST00000589447 HOXD11P31277 338 aaPredicted RBP6.3□□□□□ -1.4
LINC01539-203ENST00000589447 CCDC180Q9P1Z9 1646 aa6.28□□□□□ -1.4
LINC01539-203ENST00000589447 NCBP3Q53F19 620 aaKnown RBP6.27□□□□□ -1.41
LINC01539-203ENST00000589447 RNF216Q9NWF9 866 aaPredicted RBP6.27□□□□□ -1.41
LINC01539-203ENST00000589447 ABCC9O60706 1549 aa6.21□□□□□ -1.42
LINC01539-203ENST00000589447 DNAJC5BQ9UF47 199 aa6.17□□□□□ -1.42
LINC01539-203ENST00000589447 DCAF8L1A6NGE4 600 aa6.13□□□□□ -1.43
LINC01539-203ENST00000589447 NPM3O75607 178 aaKnown RBP6.1□□□□□ -1.43
LINC01539-203ENST00000589447 AMER1Q5JTC6 1135 aaPredicted RBP6.05□□□□□ -1.44
LINC01539-203ENST00000589447 RNF39Q9H2S5 420 aa6.05□□□□□ -1.44
LINC01539-203ENST00000589447 CACNB1Q02641 598 aaPredicted RBP6.04□□□□□ -1.44
LINC01539-203ENST00000589447 CSRNP3Q8WYN3 585 aa6.04□□□□□ -1.44
LINC01539-203ENST00000589447 UNC13AQ9UPW8 1703 aa6.04□□□□□ -1.44
LINC01539-203ENST00000589447 KCNA4P22459 653 aa6.02□□□□□ -1.45
LINC01539-203ENST00000589447 C1QBPQ07021 282 aaKnown RBP6.01□□□□□ -1.45
LINC01539-203ENST00000589447 RTN4Q9NQC3 1192 aaKnown RBP5.98□□□□□ -1.45
LINC01539-203ENST00000589447 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.95□□□□□ -1.46
LINC01539-203ENST00000589447 RB1CC1Q8TDY2 1594 aa5.89□□□□□ -1.47
LINC01539-203ENST00000589447 SLC4A1APQ9BWU0 796 aaKnown RBP5.86□□□□□ -1.47
LINC01539-203ENST00000589447 BICRAQ9NZM4 1560 aa5.84□□□□□ -1.47
LINC01539-203ENST00000589447 U3KPZ7 1027 aaPredicted RBP5.83□□□□□ -1.48
LINC01539-203ENST00000589447 APLP2Q06481 763 aa5.82□□□□□ -1.48
LINC01539-203ENST00000589447 NACADO15069 1562 aa5.81□□□□□ -1.48
LINC01539-203ENST00000589447 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.81□□□□□ -1.48
LINC01539-203ENST00000589447 HNRNPUL2Q1KMD3 747 aaKnown RBP5.81□□□□□ -1.48
LINC01539-203ENST00000589447 SLC4A2P04920 1241 aa5.79□□□□□ -1.48
LINC01539-203ENST00000589447 SAMD1Q6SPF0 538 aaPredicted RBP5.76□□□□□ -1.49
LINC01539-203ENST00000589447 DAXXQ9UER7 740 aaPredicted RBP5.74□□□□□ -1.49
LINC01539-203ENST00000589447 MYCNP04198 464 aaPredicted RBP5.72□□□□□ -1.49
LINC01539-203ENST00000589447 ZNF219Q9P2Y4 722 aaPredicted RBP5.72□□□□□ -1.49
LINC01539-203ENST00000589447 SCRIBQ14160 1630 aa5.72□□□□□ -1.49
LINC01539-203ENST00000589447 ZCCHC6Q5VYS8 1495 aaKnown RBP5.71□□□□□ -1.49
LINC01539-203ENST00000589447 MYO15BQ96JP2 1530 aa5.69□□□□□ -1.5
LINC01539-203ENST00000589447 CAPN15O75808 1086 aa5.69□□□□□ -1.5
LINC01539-203ENST00000589447 CC2D2AQ9P2K1 1620 aa5.68□□□□□ -1.5
LINC01539-203ENST00000589447 SPINK5Q9NQ38 1064 aaPredicted RBP5.68□□□□□ -1.5
LINC01539-203ENST00000589447 FOXD4L1Q9NU39 408 aa5.68□□□□□ -1.5
LINC01539-203ENST00000589447 PABPN1Q86U42 306 aaKnown RBP eCLIP5.67□□□□□ -1.5
LINC01539-203ENST00000589447 DSG3P32926 999 aa5.66□□□□□ -1.5
LINC01539-203ENST00000589447 EIF4G1Q04637 1599 aaKnown RBP5.63□□□□□ -1.51
LINC01539-203ENST00000589447 DCAF1Q9Y4B6 1507 aa5.63□□□□□ -1.51
LINC01539-203ENST00000589447 POTEHQ6S545 545 aa5.61□□□□□ -1.51
LINC01539-203ENST00000589447 SHROOM4Q9ULL8 1493 aa5.59□□□□□ -1.51
LINC01539-203ENST00000589447 TRHP20396 242 aaPredicted RBP5.59□□□□□ -1.51
LINC01539-203ENST00000589447 ARXQ96QS3 562 aa5.59□□□□□ -1.51
LINC01539-203ENST00000589447 BCANQ96GW7 911 aa5.58□□□□□ -1.52
LINC01539-203ENST00000589447 CECR2Q9BXF3 1484 aa5.57□□□□□ -1.52
LINC01539-203ENST00000589447 DCAF8L2P0C7V8 631 aa5.55□□□□□ -1.52
LINC01539-203ENST00000589447 ATXN8OSP0DMR3 200 aa5.55□□□□□ -1.52
LINC01539-203ENST00000589447 ZBTB22O15209 634 aa5.54□□□□□ -1.52
LINC01539-203ENST00000589447 TAOK2Q9UL54 1235 aa5.53□□□□□ -1.52
LINC01539-203ENST00000589447 ZBTB12Q9Y330 459 aaPredicted RBP5.53□□□□□ -1.52
LINC01539-203ENST00000589447 ABCB7O75027 752 aa5.52□□□□□ -1.53
LINC01539-203ENST00000589447 HRCP23327 699 aa5.52□□□□□ -1.53
LINC01539-203ENST00000589447 PRKCSHP14314 528 aaPredicted RBP5.51□□□□□ -1.53
LINC01539-203ENST00000589447 PLCB2Q00722 1185 aa5.51□□□□□ -1.53
LINC01539-203ENST00000589447 RBM42Q9BTD8 480 aaKnown RBP5.51□□□□□ -1.53
LINC01539-203ENST00000589447 ERICH6Q7L0X2 663 aa5.48□□□□□ -1.53
LINC01539-203ENST00000589447 POLA2Q14181 598 aa5.47□□□□□ -1.53
LINC01539-203ENST00000589447 ATF5Q9Y2D1 282 aaPredicted RBP5.44□□□□□ -1.54
LINC01539-203ENST00000589447 SMARCA4P51532 1647 aa5.44□□□□□ -1.54
LINC01539-203ENST00000589447 KIF21AQ7Z4S6 1674 aa5.43□□□□□ -1.54
LINC01539-203ENST00000589447 PELP1Q8IZL8 1130 aaKnown RBP5.43□□□□□ -1.54
LINC01539-203ENST00000589447 THOC2Q8NI27 1593 aaKnown RBP5.42□□□□□ -1.54
LINC01539-203ENST00000589447 SUPT5HO00267 1087 aaKnown RBP5.42□□□□□ -1.54
LINC01539-203ENST00000589447 VSIG10Q8N0Z9 540 aa5.41□□□□□ -1.54
LINC01539-203ENST00000589447 TIMELESSQ9UNS1 1208 aa5.4□□□□□ -1.54
LINC01539-203ENST00000589447 NESP48681 1621 aa5.38□□□□□ -1.55
LINC01539-203ENST00000589447 FKBP8Q14318 412 aa5.38□□□□□ -1.55
LINC01539-203ENST00000589447 TPRNQ4KMQ1 711 aa5.38□□□□□ -1.55
LINC01539-203ENST00000589447 HMGXB3Q12766 1538 aa5.38□□□□□ -1.55
LINC01539-203ENST00000589447 HOMEZQ8IX15 550 aa5.37□□□□□ -1.55
LINC01539-203ENST00000589447 HAP1P54257 671 aaPredicted RBP5.36□□□□□ -1.55
LINC01539-203ENST00000589447 PEG3Q9GZU2 1588 aa5.35□□□□□ -1.55
LINC01539-203ENST00000589447 TULP1O00294 542 aaPredicted RBP5.35□□□□□ -1.55
LINC01539-203ENST00000589447 FBLN2P98095 1184 aa5.35□□□□□ -1.55
LINC01539-203ENST00000589447 AKT1S1Q96B36 256 aa5.35□□□□□ -1.55
LINC01539-203ENST00000589447 PCGF6Q9BYE7 350 aa5.35□□□□□ -1.55
LINC01539-203ENST00000589447 ATAD2BQ9ULI0 1458 aa5.34□□□□□ -1.55
LINC01539-203ENST00000589447 SMARCA2P51531 1590 aa5.33□□□□□ -1.56
LINC01539-203ENST00000589447 MROH2BQ7Z745 1585 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms