RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 CTTNBP2Q8WZ74 1663 aa18.25■□□□□ 0.51
VMP1-207ENST00000588131 CEP162Q5TB80 1403 aa18.22■□□□□ 0.51
VMP1-207ENST00000588131 CHD1O14646 1710 aa18.21■□□□□ 0.51
VMP1-207ENST00000588131 FOXD1Q16676 465 aa18.2■□□□□ 0.5
VMP1-207ENST00000588131 CHMP7Q8WUX9 453 aaPredicted RBP18.2■□□□□ 0.5
VMP1-207ENST00000588131 FBLN2P98095 1184 aa18.19■□□□□ 0.5
VMP1-207ENST00000588131 CEP170Q5SW79 1584 aa18.17■□□□□ 0.5
VMP1-207ENST00000588131 RANGAP1P46060 587 aaPredicted RBP18.14■□□□□ 0.49
VMP1-207ENST00000588131 CLIP1P30622 1438 aa18.14■□□□□ 0.49
VMP1-207ENST00000588131 NUP160Q12769 1436 aa18.14■□□□□ 0.49
VMP1-207ENST00000588131 IQGAP2Q13576 1575 aa18.12■□□□□ 0.49
VMP1-207ENST00000588131 KIAA0586Q9BVV6 1533 aa18.1■□□□□ 0.49
VMP1-207ENST00000588131 ARHGAP35Q9NRY4 1499 aa18.07■□□□□ 0.48
VMP1-207ENST00000588131 ARAP1Q96P48 1450 aa18.04■□□□□ 0.48
VMP1-207ENST00000588131 SAMD9Q5K651 1589 aa18.04■□□□□ 0.48
VMP1-207ENST00000588131 EFCAB5A4FU69 1503 aa18.03■□□□□ 0.48
VMP1-207ENST00000588131 UGGT2Q9NYU1 1516 aa18.03■□□□□ 0.48
VMP1-207ENST00000588131 CLASP1Q7Z460 1538 aa18■□□□□ 0.47
VMP1-207ENST00000588131 P3H3Q8IVL6 736 aa17.97■□□□□ 0.47
VMP1-207ENST00000588131 FHOD3Q2V2M9 1422 aa17.97■□□□□ 0.47
VMP1-207ENST00000588131 DISP1Q96F81 1524 aa17.96■□□□□ 0.47
VMP1-207ENST00000588131 KIAA0556O60303 1618 aa17.95■□□□□ 0.46
VMP1-207ENST00000588131 SHROOM2Q13796 1616 aa17.95■□□□□ 0.46
VMP1-207ENST00000588131 JPH4Q96JJ6 628 aa17.94■□□□□ 0.46
VMP1-207ENST00000588131 VPS8Q8N3P4 1428 aa17.94■□□□□ 0.46
VMP1-207ENST00000588131 PRG4Q92954 1404 aaPredicted RBP17.89■□□□□ 0.45
VMP1-207ENST00000588131 OSCARQ8IYS5 282 aa17.87■□□□□ 0.45
VMP1-207ENST00000588131 CARMIL2Q6F5E8 1435 aa17.86■□□□□ 0.45
VMP1-207ENST00000588131 ERCC6L2Q5T890 1561 aa17.86■□□□□ 0.45
VMP1-207ENST00000588131 PCF11O94913 1555 aaKnown RBP17.85■□□□□ 0.45
VMP1-207ENST00000588131 FMN1Q68DA7 1419 aa17.83■□□□□ 0.45
VMP1-207ENST00000588131 CASKIN1Q8WXD9 1431 aa17.79■□□□□ 0.44
VMP1-207ENST00000588131 TTBK1Q5TCY1 1321 aaPredicted RBP17.78■□□□□ 0.44
VMP1-207ENST00000588131 FYCO1Q9BQS8 1478 aa17.77■□□□□ 0.44
VMP1-207ENST00000588131 LRRIQ1Q96JM4 1722 aa17.75■□□□□ 0.43
VMP1-207ENST00000588131 RAPGEF6Q8TEU7 1601 aa17.74■□□□□ 0.43
VMP1-207ENST00000588131 PTPRGP23470 1445 aa17.72■□□□□ 0.43
VMP1-207ENST00000588131 HECW1Q76N89 1606 aa17.72■□□□□ 0.43
VMP1-207ENST00000588131 PLB1Q6P1J6 1458 aa17.72■□□□□ 0.43
VMP1-207ENST00000588131 CFAP43Q8NDM7 1665 aa17.71■□□□□ 0.43
VMP1-207ENST00000588131 ABCA8O94911 1581 aa17.71■□□□□ 0.43
VMP1-207ENST00000588131 PPARGC1BQ86YN6 1023 aaKnown RBP17.71■□□□□ 0.43
VMP1-207ENST00000588131 ATP1B4Q9UN42 357 aaPredicted RBP17.71■□□□□ 0.43
VMP1-207ENST00000588131 TIAM1Q13009 1591 aa17.7■□□□□ 0.42
VMP1-207ENST00000588131 NUP153P49790 1475 aaKnown RBP17.68■□□□□ 0.42
VMP1-207ENST00000588131 MAP3K1Q13233 1512 aa17.67■□□□□ 0.42
VMP1-207ENST00000588131 APLP2Q06481 763 aa17.67■□□□□ 0.42
VMP1-207ENST00000588131 ARHGEF11O15085 1522 aa17.65■□□□□ 0.42
VMP1-207ENST00000588131 EPRSP07814 1512 aaKnown RBP17.65■□□□□ 0.42
VMP1-207ENST00000588131 CDK13Q14004 1512 aaKnown RBP17.64■□□□□ 0.41
VMP1-207ENST00000588131 CCDC18Q5T9S5 1454 aa17.63■□□□□ 0.41
VMP1-207ENST00000588131 KANK4Q5T7N3 995 aaPredicted RBP17.63■□□□□ 0.41
VMP1-207ENST00000588131 UACAQ9BZF9 1416 aa17.63■□□□□ 0.41
VMP1-207ENST00000588131 ARID3CA6NKF2 412 aa17.61■□□□□ 0.41
VMP1-207ENST00000588131 ABCC2Q92887 1545 aa17.61■□□□□ 0.41
VMP1-207ENST00000588131 LRRC9Q6ZRR7 1453 aa17.6■□□□□ 0.41
VMP1-207ENST00000588131 RIMBP3CA6NJZ7 1639 aa17.6■□□□□ 0.41
VMP1-207ENST00000588131 RIMBP3BA6NNM3 1639 aa17.6■□□□□ 0.41
VMP1-207ENST00000588131 RIMBP3Q9UFD9 1639 aa17.6■□□□□ 0.41
VMP1-207ENST00000588131 MAGI3Q5TCQ9 1506 aa17.58■□□□□ 0.41
VMP1-207ENST00000588131 UHRF1BP1LA0JNW5 1464 aa17.57■□□□□ 0.4
VMP1-207ENST00000588131 PLPPR3Q6T4P5 718 aa17.56■□□□□ 0.4
VMP1-207ENST00000588131 ADCY10Q96PN6 1610 aa17.56■□□□□ 0.4
VMP1-207ENST00000588131 ATP10BO94823 1461 aa17.56■□□□□ 0.4
VMP1-207ENST00000588131 EHBP1L1Q8N3D4 1523 aa17.53■□□□□ 0.4
VMP1-207ENST00000588131 ZCCHC11Q5TAX3 1644 aaKnown RBP17.51■□□□□ 0.39
VMP1-207ENST00000588131 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.51■□□□□ 0.39
VMP1-207ENST00000588131 HNRNPUL2Q1KMD3 747 aaKnown RBP17.51■□□□□ 0.39
VMP1-207ENST00000588131 MTUS2Q5JR59 1369 aa17.51■□□□□ 0.39
VMP1-207ENST00000588131 KDM5BQ9UGL1 1544 aa17.5■□□□□ 0.39
VMP1-207ENST00000588131 SUPT6HQ7KZ85 1726 aaKnown RBP17.47■□□□□ 0.39
VMP1-207ENST00000588131 POTEDQ86YR6 584 aa17.46■□□□□ 0.39
VMP1-207ENST00000588131 TROQ12816 1431 aaPredicted RBP17.46■□□□□ 0.39
VMP1-207ENST00000588131 NCOA2Q15596 1464 aa17.44■□□□□ 0.38
VMP1-207ENST00000588131 CDK11AQ9UQ88 783 aaPredicted RBP17.44■□□□□ 0.38
VMP1-207ENST00000588131 KIF14Q15058 1648 aa17.43■□□□□ 0.38
VMP1-207ENST00000588131 CYB5RLQ6IPT4 315 aa17.43■□□□□ 0.38
VMP1-207ENST00000588131 PHLDB1Q86UU1 1377 aa17.42■□□□□ 0.38
VMP1-207ENST00000588131 TRIM26Q12899 539 aaPredicted RBP17.42■□□□□ 0.38
VMP1-207ENST00000588131 PLEKHD1A6NEE1 506 aa17.41■□□□□ 0.38
VMP1-207ENST00000588131 RRBP1Q9P2E9 1410 aaKnown RBP17.36■□□□□ 0.37
VMP1-207ENST00000588131 ABCC10Q5T3U5 1492 aa17.35■□□□□ 0.37
VMP1-207ENST00000588131 MYOM3Q5VTT5 1437 aa17.34■□□□□ 0.37
VMP1-207ENST00000588131 ASXL2Q76L83 1435 aa17.34■□□□□ 0.37
VMP1-207ENST00000588131 PCGF6Q9BYE7 350 aa17.34■□□□□ 0.37
VMP1-207ENST00000588131 WDR7Q9Y4E6 1490 aa17.34■□□□□ 0.37
VMP1-207ENST00000588131 NPM1P06748 294 aaKnown RBP eCLIP17.33■□□□□ 0.36
VMP1-207ENST00000588131 MSH5O43196 834 aa17.32■□□□□ 0.36
VMP1-207ENST00000588131 TTC37Q6PGP7 1564 aa17.32■□□□□ 0.36
VMP1-207ENST00000588131 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.31■□□□□ 0.36
VMP1-207ENST00000588131 FGD6Q6ZV73 1430 aa17.31■□□□□ 0.36
VMP1-207ENST00000588131 CCNB3Q8WWL7 1395 aa17.3■□□□□ 0.36
VMP1-207ENST00000588131 ITSN2Q9NZM3 1697 aa17.3■□□□□ 0.36
VMP1-207ENST00000588131 CDC42BPAQ5VT25 1732 aa17.3■□□□□ 0.36
VMP1-207ENST00000588131 KCNH8Q96L42 1107 aa17.29■□□□□ 0.36
VMP1-207ENST00000588131 MAPKBP1O60336 1514 aa17.29■□□□□ 0.36
VMP1-207ENST00000588131 GPATCH8Q9UKJ3 1502 aaKnown RBP17.29■□□□□ 0.36
VMP1-207ENST00000588131 PTPN23Q9H3S7 1636 aa17.27■□□□□ 0.36
VMP1-207ENST00000588131 PREX2Q70Z35 1606 aa17.25■□□□□ 0.35
VMP1-207ENST00000588131 MIA2Q96PC5 1412 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms