RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 BAZ1BQ9UIG0 1483 aaKnown RBP9.34□□□□□ -0.91
LIG3-210ENST00000588109 PRKAR2AP13861 404 aaKnown RBP9.33□□□□□ -0.92
LIG3-210ENST00000588109 VASPP50552 380 aaPredicted RBP9.33□□□□□ -0.92
LIG3-210ENST00000588109 PIP4P2Q8N4L2 257 aa9.33□□□□□ -0.92
LIG3-210ENST00000588109 NCAPD3P42695 1498 aa9.33□□□□□ -0.92
LIG3-210ENST00000588109 TOP2AP11388 1531 aaKnown RBP9.31□□□□□ -0.92
LIG3-210ENST00000588109 HMGXB3Q12766 1538 aa9.31□□□□□ -0.92
LIG3-210ENST00000588109 CHADLQ6NUI6 762 aa9.3□□□□□ -0.92
LIG3-210ENST00000588109 KLHL34Q8N239 644 aa9.3□□□□□ -0.92
LIG3-210ENST00000588109 ZBTB47Q9UFB7 747 aaPredicted RBP9.29□□□□□ -0.92
LIG3-210ENST00000588109 CREBZFQ9NS37 354 aa9.28□□□□□ -0.92
LIG3-210ENST00000588109 NPM1P06748 294 aaKnown RBP eCLIP9.25□□□□□ -0.93
LIG3-210ENST00000588109 POTEHQ6S545 545 aa9.22□□□□□ -0.93
LIG3-210ENST00000588109 FARP1Q9Y4F1 1045 aaPredicted RBP9.22□□□□□ -0.93
LIG3-210ENST00000588109 CCDC88BA6NC98 1476 aa9.2□□□□□ -0.94
LIG3-210ENST00000588109 IFNLR1Q8IU57 520 aaPredicted RBP9.18□□□□□ -0.94
LIG3-210ENST00000588109 HAX1O00165 279 aa9.14□□□□□ -0.95
LIG3-210ENST00000588109 MNX1P50219 401 aaPredicted RBP9.14□□□□□ -0.95
LIG3-210ENST00000588109 SPOCK2Q92563 424 aa9.14□□□□□ -0.95
LIG3-210ENST00000588109 PAK3O75914 559 aaPredicted RBP9.13□□□□□ -0.95
LIG3-210ENST00000588109 CADPSQ9ULU8 1353 aa9.09□□□□□ -0.95
LIG3-210ENST00000588109 DCAF8Q5TAQ9 597 aa9.08□□□□□ -0.96
LIG3-210ENST00000588109 CFTRP13569 1480 aa9.08□□□□□ -0.96
LIG3-210ENST00000588109 CD44P16070 742 aaKnown RBP9.07□□□□□ -0.96
LIG3-210ENST00000588109 FAM212AQ96EL1 285 aa9.07□□□□□ -0.96
LIG3-210ENST00000588109 LAMC3Q9Y6N6 1575 aa9.07□□□□□ -0.96
LIG3-210ENST00000588109 TSPYL2Q9H2G4 693 aaPredicted RBP9.06□□□□□ -0.96
LIG3-210ENST00000588109 NESP48681 1621 aa9.05□□□□□ -0.96
LIG3-210ENST00000588109 NUBP1P53384 320 aa9.05□□□□□ -0.96
LIG3-210ENST00000588109 CIZ1Q9ULV3 898 aaPredicted RBP9.05□□□□□ -0.96
LIG3-210ENST00000588109 ZRANB1Q9UGI0 708 aa9.04□□□□□ -0.96
LIG3-210ENST00000588109 PRDM2Q13029 1718 aa9.04□□□□□ -0.96
LIG3-210ENST00000588109 C19orf67A6NJJ6 358 aa9.03□□□□□ -0.96
LIG3-210ENST00000588109 GSE1Q14687 1217 aa9.03□□□□□ -0.96
LIG3-210ENST00000588109 RASEFQ8IZ41 740 aa9.02□□□□□ -0.97
LIG3-210ENST00000588109 PDS5BQ9NTI5 1447 aa9.01□□□□□ -0.97
LIG3-210ENST00000588109 FANCD2Q9BXW9 1451 aa9□□□□□ -0.97
LIG3-210ENST00000588109 ERCC6Q03468 1493 aa8.97□□□□□ -0.97
LIG3-210ENST00000588109 CEP164Q9UPV0 1460 aa8.97□□□□□ -0.97
LIG3-210ENST00000588109 KIF21AQ7Z4S6 1674 aa8.97□□□□□ -0.97
LIG3-210ENST00000588109 ABCC8Q09428 1581 aa8.95□□□□□ -0.98
LIG3-210ENST00000588109 TRIM41Q8WV44 630 aa8.93□□□□□ -0.98
LIG3-210ENST00000588109 WRNQ14191 1432 aaPredicted RBP eCLIP8.93□□□□□ -0.98
LIG3-210ENST00000588109 EVX2Q03828 476 aa8.92□□□□□ -0.98
LIG3-210ENST00000588109 AMER1Q5JTC6 1135 aaPredicted RBP8.91□□□□□ -0.98
LIG3-210ENST00000588109 ZNF579Q8NAF0 562 aaKnown RBP8.91□□□□□ -0.98
LIG3-210ENST00000588109 CCDC61Q9Y6R9 512 aa8.91□□□□□ -0.98
LIG3-210ENST00000588109 MRC2Q9UBG0 1479 aa8.9□□□□□ -0.98
LIG3-210ENST00000588109 PYGBP11216 843 aa8.9□□□□□ -0.98
LIG3-210ENST00000588109 CLCN6P51797 869 aa8.9□□□□□ -0.98
LIG3-210ENST00000588109 PHF12Q96QT6 1004 aa8.89□□□□□ -0.99
LIG3-210ENST00000588109 SYNJ1O43426 1573 aa8.89□□□□□ -0.99
LIG3-210ENST00000588109 DNMBPQ6XZF7 1577 aa8.89□□□□□ -0.99
LIG3-210ENST00000588109 CUX1P39880 1505 aa8.89□□□□□ -0.99
LIG3-210ENST00000588109 ECM2O94769 699 aaPredicted RBP8.88□□□□□ -0.99
LIG3-210ENST00000588109 URB2Q14146 1524 aaKnown RBP8.88□□□□□ -0.99
LIG3-210ENST00000588109 TOP2BQ02880 1626 aa8.87□□□□□ -0.99
LIG3-210ENST00000588109 TOPBP1Q92547 1522 aa8.87□□□□□ -0.99
LIG3-210ENST00000588109 BIVM-ERCC5R4GMW8 1640 aa8.87□□□□□ -0.99
LIG3-210ENST00000588109 SP7Q8TDD2 431 aaPredicted RBP8.86□□□□□ -0.99
LIG3-210ENST00000588109 THOC2Q8NI27 1593 aaKnown RBP8.86□□□□□ -0.99
LIG3-210ENST00000588109 WDR62O43379 1518 aa8.85□□□□□ -0.99
LIG3-210ENST00000588109 CHRM1P11229 460 aaPredicted RBP8.85□□□□□ -0.99
LIG3-210ENST00000588109 KIF12Q96FN5 646 aa8.85□□□□□ -0.99
LIG3-210ENST00000588109 PKD2Q13563 968 aa8.84□□□□□ -0.99
LIG3-210ENST00000588109 PCDHB13Q9Y5F0 798 aa8.84□□□□□ -0.99
LIG3-210ENST00000588109 FGD5Q6ZNL6 1462 aa8.83□□□□□ -1
LIG3-210ENST00000588109 MAP3K13O43283 966 aa8.83□□□□□ -1
LIG3-210ENST00000588109 SGIP1Q9BQI5 828 aa8.83□□□□□ -1
LIG3-210ENST00000588109 GABBR2O75899 941 aa8.81□□□□□ -1
LIG3-210ENST00000588109 ZNF467Q7Z7K2 595 aaPredicted RBP8.81□□□□□ -1
LIG3-210ENST00000588109 RTN4Q9NQC3 1192 aaKnown RBP8.81□□□□□ -1
LIG3-210ENST00000588109 POLA1P09884 1462 aaPredicted RBP8.81□□□□□ -1
LIG3-210ENST00000588109 TAOK2Q9UL54 1235 aa8.8□□□□□ -1
LIG3-210ENST00000588109 SOGA1O94964 1423 aa8.79□□□□□ -1
LIG3-210ENST00000588109 MS4A3Q96HJ5 214 aa8.78□□□□□ -1
LIG3-210ENST00000588109 RAD54L2Q9Y4B4 1467 aa8.77□□□□□ -1
LIG3-210ENST00000588109 PCDHB8Q9UN66 801 aa8.77□□□□□ -1.01
LIG3-210ENST00000588109 IFT140Q96RY7 1462 aa8.77□□□□□ -1.01
LIG3-210ENST00000588109 RIOK3O14730 519 aaKnown RBP8.76□□□□□ -1.01
LIG3-210ENST00000588109 GALR2O43603 387 aaPredicted RBP8.76□□□□□ -1.01
LIG3-210ENST00000588109 IFNL1Q8IU54 200 aa8.76□□□□□ -1.01
LIG3-210ENST00000588109 DCBLD2Q96PD2 775 aa8.76□□□□□ -1.01
LIG3-210ENST00000588109 CUX2O14529 1486 aa8.76□□□□□ -1.01
LIG3-210ENST00000588109 TARBP1Q13395 1621 aaKnown RBP8.74□□□□□ -1.01
LIG3-210ENST00000588109 FAM9AQ8IZU1 332 aaPredicted RBP8.74□□□□□ -1.01
LIG3-210ENST00000588109 ABCA10Q8WWZ4 1543 aa8.74□□□□□ -1.01
LIG3-210ENST00000588109 WDR97A6NE52 1622 aa8.73□□□□□ -1.01
LIG3-210ENST00000588109 KIF27Q86VH2 1401 aa8.73□□□□□ -1.01
LIG3-210ENST00000588109 RGL2O15211 777 aa8.72□□□□□ -1.01
LIG3-210ENST00000588109 TDRD9Q8NDG6 1382 aaKnown RBP8.72□□□□□ -1.01
LIG3-210ENST00000588109 VGFO15240 615 aaPredicted RBP8.71□□□□□ -1.02
LIG3-210ENST00000588109 PDAP1Q13442 181 aaKnown RBP8.71□□□□□ -1.02
LIG3-210ENST00000588109 EEA1Q15075 1411 aa8.71□□□□□ -1.02
LIG3-210ENST00000588109 RUSC2Q8N2Y8 1516 aa8.7□□□□□ -1.02
LIG3-210ENST00000588109 PSEN1P49768 467 aa8.7□□□□□ -1.02
LIG3-210ENST00000588109 GAPVD1Q14C86 1478 aa8.7□□□□□ -1.02
LIG3-210ENST00000588109 ZNF608Q9ULD9 1512 aaPredicted RBP8.7□□□□□ -1.02
LIG3-210ENST00000588109 TIE1P35590 1138 aa8.69□□□□□ -1.02
LIG3-210ENST00000588109 EIF4G3O43432 1585 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms