RNA–Protein interactions for RNA: ENST00000584112.1

CCDC47-206, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2

Gene CCDC47, Length 588 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-206ENST00000584112 SHROOM2Q13796 1616 aa20.65■□□□□ 0.9
CCDC47-206ENST00000584112 NPM1P06748 294 aaKnown RBP eCLIP20.61■□□□□ 0.89
CCDC47-206ENST00000584112 GRIN2AQ12879 1464 aa20.59■□□□□ 0.89
CCDC47-206ENST00000584112 CHIC1Q5VXU3 224 aa20.58■□□□□ 0.89
CCDC47-206ENST00000584112 NUP160Q12769 1436 aa20.57■□□□□ 0.88
CCDC47-206ENST00000584112 PRG4Q92954 1404 aaPredicted RBP20.53■□□□□ 0.88
CCDC47-206ENST00000584112 ADCY10Q96PN6 1610 aa20.53■□□□□ 0.88
CCDC47-206ENST00000584112 PPRC1Q5VV67 1664 aaKnown RBP20.51■□□□□ 0.87
CCDC47-206ENST00000584112 COL17A1Q9UMD9 1497 aaPredicted RBP20.5■□□□□ 0.87
CCDC47-206ENST00000584112 CUX1P39880 1505 aa20.45■□□□□ 0.86
CCDC47-206ENST00000584112 ABCA5Q8WWZ7 1642 aa20.44■□□□□ 0.86
CCDC47-206ENST00000584112 SPATA31D1Q6ZQQ2 1576 aa20.43■□□□□ 0.86
CCDC47-206ENST00000584112 TOP2BQ02880 1626 aa20.42■□□□□ 0.86
CCDC47-206ENST00000584112 ADAMTS12P58397 1594 aa20.41■□□□□ 0.86
CCDC47-206ENST00000584112 JPH4Q96JJ6 628 aa20.37■□□□□ 0.85
CCDC47-206ENST00000584112 CERKQ8TCT0 537 aa20.33■□□□□ 0.85
CCDC47-206ENST00000584112 ABCA10Q8WWZ4 1543 aa20.3■□□□□ 0.84
CCDC47-206ENST00000584112 FHAD1B1AJZ9 1412 aa20.24■□□□□ 0.83
CCDC47-206ENST00000584112 GLI2P10070 1586 aa20.24■□□□□ 0.83
CCDC47-206ENST00000584112 PCF11O94913 1555 aaKnown RBP20.2■□□□□ 0.82
CCDC47-206ENST00000584112 ASXL2Q76L83 1435 aa20.19■□□□□ 0.82
CCDC47-206ENST00000584112 KIF21BO75037 1637 aa20.19■□□□□ 0.82
CCDC47-206ENST00000584112 PTPRMP28827 1452 aa20.18■□□□□ 0.82
CCDC47-206ENST00000584112 RUSC2Q8N2Y8 1516 aa20.16■□□□□ 0.82
CCDC47-206ENST00000584112 MAP3K4Q9Y6R4 1608 aa20.13■□□□□ 0.81
CCDC47-206ENST00000584112 HSPA2P54652 639 aa20.12■□□□□ 0.81
CCDC47-206ENST00000584112 PLB1Q6P1J6 1458 aa20.11■□□□□ 0.81
CCDC47-206ENST00000584112 TTBK1Q5TCY1 1321 aaPredicted RBP20.1■□□□□ 0.81
CCDC47-206ENST00000584112 TEX14Q8IWB6 1497 aa20.09■□□□□ 0.81
CCDC47-206ENST00000584112 ABCC2Q92887 1545 aa20.07■□□□□ 0.8
CCDC47-206ENST00000584112 ADAMTSL3P82987 1691 aa20.06■□□□□ 0.8
CCDC47-206ENST00000584112 CUL7Q14999 1698 aa20.06■□□□□ 0.8
CCDC47-206ENST00000584112 EPRSP07814 1512 aaKnown RBP20.04■□□□□ 0.8
CCDC47-206ENST00000584112 ERICH3Q5RHP9 1530 aa19.99■□□□□ 0.79
CCDC47-206ENST00000584112 SUPT5HO00267 1087 aaKnown RBP19.98■□□□□ 0.79
CCDC47-206ENST00000584112 PTPRGP23470 1445 aa19.98■□□□□ 0.79
CCDC47-206ENST00000584112 MADDQ8WXG6 1647 aa19.93■□□□□ 0.78
CCDC47-206ENST00000584112 WRNQ14191 1432 aaPredicted RBP eCLIP19.92■□□□□ 0.78
CCDC47-206ENST00000584112 KIAA0586Q9BVV6 1533 aa19.9■□□□□ 0.78
CCDC47-206ENST00000584112 PLPPR3Q6T4P5 718 aa19.87■□□□□ 0.77
CCDC47-206ENST00000584112 BCORL1Q5H9F3 1711 aa19.85■□□□□ 0.77
CCDC47-206ENST00000584112 RIMS1Q86UR5 1692 aaKnown RBP19.83■□□□□ 0.76
CCDC47-206ENST00000584112 UHRF1BP1LA0JNW5 1464 aa19.81■□□□□ 0.76
CCDC47-206ENST00000584112 TNIKQ9UKE5 1360 aa19.8■□□□□ 0.76
CCDC47-206ENST00000584112 ZCCHC11Q5TAX3 1644 aaKnown RBP19.79■□□□□ 0.76
CCDC47-206ENST00000584112 KDM5BQ9UGL1 1544 aa19.77■□□□□ 0.76
CCDC47-206ENST00000584112 CD109Q6YHK3 1445 aa19.76■□□□□ 0.75
CCDC47-206ENST00000584112 UACAQ9BZF9 1416 aa19.76■□□□□ 0.75
CCDC47-206ENST00000584112 MAGI3Q5TCQ9 1506 aa19.76■□□□□ 0.75
CCDC47-206ENST00000584112 ARID4BQ4LE39 1312 aaPredicted RBP19.76■□□□□ 0.75
CCDC47-206ENST00000584112 BIVM-ERCC5R4GMW8 1640 aa19.74■□□□□ 0.75
CCDC47-206ENST00000584112 WDR7Q9Y4E6 1490 aa19.71■□□□□ 0.75
CCDC47-206ENST00000584112 CFAP43Q8NDM7 1665 aa19.7■□□□□ 0.74
CCDC47-206ENST00000584112 STRCQ7RTU9 1775 aa19.67■□□□□ 0.74
CCDC47-206ENST00000584112 ARAP3Q8WWN8 1544 aa19.66■□□□□ 0.74
CCDC47-206ENST00000584112 KCNH8Q96L42 1107 aa19.66■□□□□ 0.74
CCDC47-206ENST00000584112 CARMIL2Q6F5E8 1435 aa19.66■□□□□ 0.74
CCDC47-206ENST00000584112 MED1Q15648 1581 aaPredicted RBP19.62■□□□□ 0.73
CCDC47-206ENST00000584112 RAPGEF3O95398 923 aa19.62■□□□□ 0.73
CCDC47-206ENST00000584112 YEATS2Q9ULM3 1422 aa19.61■□□□□ 0.73
CCDC47-206ENST00000584112 LTBP4Q8N2S1 1624 aa19.58■□□□□ 0.73
CCDC47-206ENST00000584112 DMRT2Q9Y5R5 561 aa19.57■□□□□ 0.72
CCDC47-206ENST00000584112 DISP1Q96F81 1524 aa19.53■□□□□ 0.72
CCDC47-206ENST00000584112 IQSEC2Q5JU85 1478 aa19.51■□□□□ 0.71
CCDC47-206ENST00000584112 FRMPD1Q5SYB0 1578 aa19.51■□□□□ 0.71
CCDC47-206ENST00000584112 PREX1Q8TCU6 1659 aa19.5■□□□□ 0.71
CCDC47-206ENST00000584112 UBAP1LF5GYI3 381 aa19.5■□□□□ 0.71
CCDC47-206ENST00000584112 SIGLEC1Q9BZZ2 1709 aa19.46■□□□□ 0.71
CCDC47-206ENST00000584112 IQGAP2Q13576 1575 aa19.45■□□□□ 0.7
CCDC47-206ENST00000584112 IGF1RP08069 1367 aa19.44■□□□□ 0.7
CCDC47-206ENST00000584112 PTPRTO14522 1441 aa19.44■□□□□ 0.7
CCDC47-206ENST00000584112 MLECQ14165 292 aa19.44■□□□□ 0.7
CCDC47-206ENST00000584112 PHF23Q9BUL5 403 aaPredicted RBP19.44■□□□□ 0.7
CCDC47-206ENST00000584112 FER1L4A9Z1Z3 1794 aa19.44■□□□□ 0.7
CCDC47-206ENST00000584112 ARHGEF40Q8TER5 1519 aa19.43■□□□□ 0.7
CCDC47-206ENST00000584112 TTC37Q6PGP7 1564 aa19.41■□□□□ 0.7
CCDC47-206ENST00000584112 HSPA1LP34931 641 aa19.41■□□□□ 0.7
CCDC47-206ENST00000584112 CEBPAP49715 358 aaPredicted RBP19.4■□□□□ 0.7
CCDC47-206ENST00000584112 POGZQ7Z3K3 1410 aa19.36■□□□□ 0.69
CCDC47-206ENST00000584112 PHLDB1Q86UU1 1377 aa19.35■□□□□ 0.69
CCDC47-206ENST00000584112 FANCAO15360 1455 aa19.35■□□□□ 0.69
CCDC47-206ENST00000584112 KIAA0556O60303 1618 aa19.33■□□□□ 0.68
CCDC47-206ENST00000584112 UHRF1BP1Q6BDS2 1440 aa19.32■□□□□ 0.68
CCDC47-206ENST00000584112 SCAF1Q9H7N4 1312 aaKnown RBP19.3■□□□□ 0.68
CCDC47-206ENST00000584112 NEO1Q92859 1461 aa19.29■□□□□ 0.68
CCDC47-206ENST00000584112 ZNF335Q9H4Z2 1342 aaPredicted RBP19.27■□□□□ 0.68
CCDC47-206ENST00000584112 KIF27Q86VH2 1401 aa19.27■□□□□ 0.68
CCDC47-206ENST00000584112 ABCA9Q8IUA7 1624 aa19.27■□□□□ 0.68
CCDC47-206ENST00000584112 ARID3CA6NKF2 412 aa19.27■□□□□ 0.68
CCDC47-206ENST00000584112 CARMIL1Q5VZK9 1371 aa19.27■□□□□ 0.68
CCDC47-206ENST00000584112 AKNAQ7Z591 1439 aa19.26■□□□□ 0.67
CCDC47-206ENST00000584112 UGGT2Q9NYU1 1516 aa19.26■□□□□ 0.67
CCDC47-206ENST00000584112 RICTORQ6R327 1708 aa19.26■□□□□ 0.67
CCDC47-206ENST00000584112 PIP4K2BP78356 416 aa19.26■□□□□ 0.67
CCDC47-206ENST00000584112 ABCA8O94911 1581 aa19.25■□□□□ 0.67
CCDC47-206ENST00000584112 SETD1BQ9UPS6 1966 aaKnown RBP19.24■□□□□ 0.67
CCDC47-206ENST00000584112 ARHGEF12Q9NZN5 1544 aa19.22■□□□□ 0.67
CCDC47-206ENST00000584112 RGS17Q9UGC6 210 aaPredicted RBP19.2■□□□□ 0.66
CCDC47-206ENST00000584112 DENND4BO75064 1496 aaPredicted RBP19.2■□□□□ 0.66
CCDC47-206ENST00000584112 ZFYVE16Q7Z3T8 1539 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms