RNA–Protein interactions for RNA: ENST00000581662.1

CDK5RAP3-221, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2

Gene CDK5RAP3, Length 557 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-221ENST00000581662 CLASP1Q7Z460 1538 aa15.73■□□□□ 0.11
CDK5RAP3-221ENST00000581662 AQRO60306 1485 aaKnown RBP eCLIP15.65■□□□□ 0.13e-11■■□□□ 14
CDK5RAP3-221ENST00000581662 KDM4FA0A1W2PPD8 638 aa15.65■□□□□ 0.1
CDK5RAP3-221ENST00000581662 TOPBP1Q92547 1522 aa15.63■□□□□ 0.09
CDK5RAP3-221ENST00000581662 FBLN2P98095 1184 aa15.63■□□□□ 0.09
CDK5RAP3-221ENST00000581662 WIZO95785 1651 aa15.6■□□□□ 0.09
CDK5RAP3-221ENST00000581662 GAPVD1Q14C86 1478 aa15.59■□□□□ 0.09
CDK5RAP3-221ENST00000581662 TARBP1Q13395 1621 aaKnown RBP15.58■□□□□ 0.09
CDK5RAP3-221ENST00000581662 ATXN8OSP0DMR3 200 aa15.58■□□□□ 0.08
CDK5RAP3-221ENST00000581662 SYNJ1O43426 1573 aa15.54■□□□□ 0.08
CDK5RAP3-221ENST00000581662 PRDM2Q13029 1718 aa15.5■□□□□ 0.07
CDK5RAP3-221ENST00000581662 ABCC8Q09428 1581 aa15.49■□□□□ 0.07
CDK5RAP3-221ENST00000581662 SNAPC4Q5SXM2 1469 aa15.48■□□□□ 0.07
CDK5RAP3-221ENST00000581662 DNMBPQ6XZF7 1577 aa15.48■□□□□ 0.07
CDK5RAP3-221ENST00000581662 ERCC6L2Q5T890 1561 aa15.47■□□□□ 0.07
CDK5RAP3-221ENST00000581662 EHMT2Q96KQ7 1210 aa15.47■□□□□ 0.07
CDK5RAP3-221ENST00000581662 KIF13AQ9H1H9 1805 aa15.46■□□□□ 0.07
CDK5RAP3-221ENST00000581662 ZBTB12Q9Y330 459 aaPredicted RBP15.44■□□□□ 0.06
CDK5RAP3-221ENST00000581662 CSRNP3Q8WYN3 585 aa15.43■□□□□ 0.06
CDK5RAP3-221ENST00000581662 POLA1P09884 1462 aaPredicted RBP15.42■□□□□ 0.06
CDK5RAP3-221ENST00000581662 MAGI1Q96QZ7 1491 aaPredicted RBP15.41■□□□□ 0.06
CDK5RAP3-221ENST00000581662 FBXO41Q8TF61 875 aa15.41■□□□□ 0.06
CDK5RAP3-221ENST00000581662 RBM42Q9BTD8 480 aaKnown RBP15.41■□□□□ 0.06
CDK5RAP3-221ENST00000581662 HECW2Q9P2P5 1572 aa15.41■□□□□ 0.06
CDK5RAP3-221ENST00000581662 TOP2AP11388 1531 aaKnown RBP15.39■□□□□ 0.05
CDK5RAP3-221ENST00000581662 CHMP7Q8WUX9 453 aaPredicted RBP15.39■□□□□ 0.05
CDK5RAP3-221ENST00000581662 TDRD9Q8NDG6 1382 aaKnown RBP15.38■□□□□ 0.05
CDK5RAP3-221ENST00000581662 SYNJ2O15056 1496 aa15.37■□□□□ 0.05
CDK5RAP3-221ENST00000581662 WDR97A6NE52 1622 aa15.35■□□□□ 0.05
CDK5RAP3-221ENST00000581662 RAD54L2Q9Y4B4 1467 aa15.35■□□□□ 0.05
CDK5RAP3-221ENST00000581662 LMTK3Q96Q04 1460 aa15.32■□□□□ 0.04
CDK5RAP3-221ENST00000581662 ABCC10Q5T3U5 1492 aa15.31■□□□□ 0.04
CDK5RAP3-221ENST00000581662 KDM6BO15054 1643 aa15.31■□□□□ 0.04
CDK5RAP3-221ENST00000581662 GRIN2BQ13224 1484 aa15.29■□□□□ 0.04
CDK5RAP3-221ENST00000581662 ADGRL1O94910 1474 aa15.28■□□□□ 0.04
CDK5RAP3-221ENST00000581662 SOGA1O94964 1423 aa15.26■□□□□ 0.03
CDK5RAP3-221ENST00000581662 FAM69CQ0P6D2 419 aa15.24■□□□□ 0.03
CDK5RAP3-221ENST00000581662 CEP170Q5SW79 1584 aa15.24■□□□□ 0.03
CDK5RAP3-221ENST00000581662 DIP2BQ9P265 1576 aa15.24■□□□□ 0.03
CDK5RAP3-221ENST00000581662 SOCS7O14512 581 aa15.22■□□□□ 0.03
CDK5RAP3-221ENST00000581662 CCDC88BA6NC98 1476 aa15.2■□□□□ 0.02
CDK5RAP3-221ENST00000581662 MAPKBP1O60336 1514 aa15.2■□□□□ 0.02
CDK5RAP3-221ENST00000581662 SHROOM2Q13796 1616 aa15.17■□□□□ 0.02
CDK5RAP3-221ENST00000581662 FGD5Q6ZNL6 1462 aa15.15■□□□□ 0.02
CDK5RAP3-221ENST00000581662 ILDR2Q71H61 639 aa15.15■□□□□ 0.02
CDK5RAP3-221ENST00000581662 NUP160Q12769 1436 aa15.14■□□□□ 0.01
CDK5RAP3-221ENST00000581662 GRIN2AQ12879 1464 aa15.11■□□□□ 0.01
CDK5RAP3-221ENST00000581662 PBRM1Q86U86 1689 aa15.1■□□□□ 0.01
CDK5RAP3-221ENST00000581662 AKT1S1Q96B36 256 aa15.09■□□□□ 0.01
CDK5RAP3-221ENST00000581662 POTEHQ6S545 545 aa15.06■□□□□ 0
CDK5RAP3-221ENST00000581662 ABCA5Q8WWZ7 1642 aa15.03■□□□□ -0
CDK5RAP3-221ENST00000581662 MKRN4PQ13434 485 aaPredicted RBP15.01□□□□□ -0.01
CDK5RAP3-221ENST00000581662 ADCY10Q96PN6 1610 aa15□□□□□ -0.01
CDK5RAP3-221ENST00000581662 TSPOAP1O95153 1857 aa15□□□□□ -0.01
CDK5RAP3-221ENST00000581662 CUX1P39880 1505 aa15□□□□□ -0.01
CDK5RAP3-221ENST00000581662 PRG4Q92954 1404 aaPredicted RBP15□□□□□ -0.01
CDK5RAP3-221ENST00000581662 ADAMTS12P58397 1594 aa14.98□□□□□ -0.01
CDK5RAP3-221ENST00000581662 DISP3Q9P2K9 1392 aa14.98□□□□□ -0.01
CDK5RAP3-221ENST00000581662 NPM1P06748 294 aaKnown RBP eCLIP14.97□□□□□ -0.01
CDK5RAP3-221ENST00000581662 COL17A1Q9UMD9 1497 aaPredicted RBP14.96□□□□□ -0.01
CDK5RAP3-221ENST00000581662 SPDYE2BA6NHP3 402 aa14.96□□□□□ -0.01
CDK5RAP3-221ENST00000581662 SPDYE6P0CI01 402 aa14.96□□□□□ -0.01
CDK5RAP3-221ENST00000581662 SPDYE2Q495Y8 402 aa14.96□□□□□ -0.01
CDK5RAP3-221ENST00000581662 CHRDL2Q6WN34 429 aa14.96□□□□□ -0.01
CDK5RAP3-221ENST00000581662 ABCA10Q8WWZ4 1543 aa14.96□□□□□ -0.02
CDK5RAP3-221ENST00000581662 REM2Q8IYK8 340 aaPredicted RBP14.95□□□□□ -0.02
CDK5RAP3-221ENST00000581662 PPRC1Q5VV67 1664 aaKnown RBP14.95□□□□□ -0.02
CDK5RAP3-221ENST00000581662 TOP2BQ02880 1626 aa14.91□□□□□ -0.02
CDK5RAP3-221ENST00000581662 FHAD1B1AJZ9 1412 aa14.87□□□□□ -0.03
CDK5RAP3-221ENST00000581662 ZNF692Q9BU19 519 aaPredicted RBP14.87□□□□□ -0.03
CDK5RAP3-221ENST00000581662 GLI2P10070 1586 aa14.86□□□□□ -0.03
CDK5RAP3-221ENST00000581662 JPH4Q96JJ6 628 aa14.86□□□□□ -0.03
CDK5RAP3-221ENST00000581662 SPATA31D1Q6ZQQ2 1576 aa14.82□□□□□ -0.04
CDK5RAP3-221ENST00000581662 RUSC2Q8N2Y8 1516 aa14.8□□□□□ -0.04
CDK5RAP3-221ENST00000581662 PITPNM1O00562 1244 aa14.77□□□□□ -0.05
CDK5RAP3-221ENST00000581662 ASXL2Q76L83 1435 aa14.75□□□□□ -0.05
CDK5RAP3-221ENST00000581662 PCF11O94913 1555 aaKnown RBP14.75□□□□□ -0.05
CDK5RAP3-221ENST00000581662 PLB1Q6P1J6 1458 aa14.75□□□□□ -0.05
CDK5RAP3-221ENST00000581662 CERKQ8TCT0 537 aa14.74□□□□□ -0.05
CDK5RAP3-221ENST00000581662 SSUH2Q9Y2M2 353 aa14.73□□□□□ -0.05
CDK5RAP3-221ENST00000581662 TEX14Q8IWB6 1497 aa14.73□□□□□ -0.05
CDK5RAP3-221ENST00000581662 MAP3K4Q9Y6R4 1608 aa14.73□□□□□ -0.05
CDK5RAP3-221ENST00000581662 ERICH3Q5RHP9 1530 aa14.72□□□□□ -0.05
CDK5RAP3-221ENST00000581662 ABCC2Q92887 1545 aa14.72□□□□□ -0.05
CDK5RAP3-221ENST00000581662 PTPRMP28827 1452 aa14.72□□□□□ -0.05
CDK5RAP3-221ENST00000581662 EPRSP07814 1512 aaKnown RBP14.68□□□□□ -0.06
CDK5RAP3-221ENST00000581662 CLEC11AQ9Y240 323 aa14.68□□□□□ -0.06
CDK5RAP3-221ENST00000581662 SPDYE1Q8NFV5 336 aaPredicted RBP14.67□□□□□ -0.06
CDK5RAP3-221ENST00000581662 KIF21BO75037 1637 aa14.65□□□□□ -0.06
CDK5RAP3-221ENST00000581662 PIP4P2Q8N4L2 257 aa14.64□□□□□ -0.07
CDK5RAP3-221ENST00000581662 WRNQ14191 1432 aaPredicted RBP eCLIP14.64□□□□□ -0.07
CDK5RAP3-221ENST00000581662 ADAMTSL3P82987 1691 aa14.64□□□□□ -0.07
CDK5RAP3-221ENST00000581662 KIAA0586Q9BVV6 1533 aa14.63□□□□□ -0.07
CDK5RAP3-221ENST00000581662 PTPRGP23470 1445 aa14.61□□□□□ -0.07
CDK5RAP3-221ENST00000581662 UHRF1BP1LA0JNW5 1464 aa14.6□□□□□ -0.07
CDK5RAP3-221ENST00000581662 CUL7Q14999 1698 aa14.56□□□□□ -0.08
CDK5RAP3-221ENST00000581662 FXR2P51116 673 aaKnown RBP eCLIP14.56□□□□□ -0.08
CDK5RAP3-221ENST00000581662 KDM5BQ9UGL1 1544 aa14.54□□□□□ -0.08
CDK5RAP3-221ENST00000581662 MAGI3Q5TCQ9 1506 aa14.53□□□□□ -0.08
CDK5RAP3-221ENST00000581662 HSPA2P54652 639 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms