RNA–Protein interactions for RNA: ENST00000581180.1

MKS1-210, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 899 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-210ENST00000581180 CTTNBP2Q8WZ74 1663 aa24.93■■□□□ 1.58
MKS1-210ENST00000581180 SHROOM2Q13796 1616 aa24.92■■□□□ 1.58
MKS1-210ENST00000581180 IQGAP2Q13576 1575 aa24.86■■□□□ 1.57
MKS1-210ENST00000581180 GOLGA3Q08378 1498 aa24.85■■□□□ 1.57
MKS1-210ENST00000581180 JPH4Q96JJ6 628 aa24.83■■□□□ 1.57
MKS1-210ENST00000581180 ARHGEF11O15085 1522 aa24.81■■□□□ 1.56
MKS1-210ENST00000581180 RIMBP3CA6NJZ7 1639 aa24.81■■□□□ 1.56
MKS1-210ENST00000581180 RIMBP3BA6NNM3 1639 aa24.81■■□□□ 1.56
MKS1-210ENST00000581180 RIMBP3Q9UFD9 1639 aa24.81■■□□□ 1.56
MKS1-210ENST00000581180 ERCC6L2Q5T890 1561 aa24.77■■□□□ 1.56
MKS1-210ENST00000581180 UGGT2Q9NYU1 1516 aa24.76■■□□□ 1.55
MKS1-210ENST00000581180 EHMT2Q96KQ7 1210 aa24.75■■□□□ 1.55
MKS1-210ENST00000581180 PRG4Q92954 1404 aaPredicted RBP24.75■■□□□ 1.55
MKS1-210ENST00000581180 UBTFP17480 764 aaKnown RBP24.71■■□□□ 1.55
MKS1-210ENST00000581180 DISP1Q96F81 1524 aa24.68■■□□□ 1.54
MKS1-210ENST00000581180 ARAP1Q96P48 1450 aa24.65■■□□□ 1.54
MKS1-210ENST00000581180 KIAA0556O60303 1618 aa24.64■■□□□ 1.53
MKS1-210ENST00000581180 CARMIL2Q6F5E8 1435 aa24.62■■□□□ 1.53
MKS1-210ENST00000581180 TNIKQ9UKE5 1360 aa24.62■■□□□ 1.53
MKS1-210ENST00000581180 SAMD9Q5K651 1589 aa24.61■■□□□ 1.53
MKS1-210ENST00000581180 LOC105371045A0A1W2PR82 267 aa24.59■■□□□ 1.53
MKS1-210ENST00000581180 EFCAB5A4FU69 1503 aa24.53■■□□□ 1.52
MKS1-210ENST00000581180 CYB5RLQ6IPT4 315 aa24.52■■□□□ 1.52
MKS1-210ENST00000581180 RANGAP1P46060 587 aaPredicted RBP24.51■■□□□ 1.51
MKS1-210ENST00000581180 PTPRGP23470 1445 aa24.49■■□□□ 1.51
MKS1-210ENST00000581180 ARHGAP35Q9NRY4 1499 aa24.47■■□□□ 1.51
MKS1-210ENST00000581180 P3H3Q8IVL6 736 aa24.46■■□□□ 1.51
MKS1-210ENST00000581180 FHOD3Q2V2M9 1422 aa24.43■■□□□ 1.5
MKS1-210ENST00000581180 CLIP1P30622 1438 aa24.41■■□□□ 1.5
MKS1-210ENST00000581180 TTBK1Q5TCY1 1321 aaPredicted RBP24.39■■□□□ 1.5
MKS1-210ENST00000581180 CEP162Q5TB80 1403 aa24.39■■□□□ 1.5
MKS1-210ENST00000581180 ADCY10Q96PN6 1610 aa24.38■■□□□ 1.49
MKS1-210ENST00000581180 ABCA8O94911 1581 aa24.36■■□□□ 1.49
MKS1-210ENST00000581180 UACAQ9BZF9 1416 aa24.35■■□□□ 1.49
MKS1-210ENST00000581180 UHRF1BP1LA0JNW5 1464 aa24.33■■□□□ 1.49
MKS1-210ENST00000581180 PLB1Q6P1J6 1458 aa24.33■■□□□ 1.49
MKS1-210ENST00000581180 ABCC2Q92887 1545 aa24.32■■□□□ 1.48
MKS1-210ENST00000581180 RAPGEF6Q8TEU7 1601 aa24.28■■□□□ 1.48
MKS1-210ENST00000581180 FMN1Q68DA7 1419 aa24.27■■□□□ 1.48
MKS1-210ENST00000581180 KDM5BQ9UGL1 1544 aa24.22■■□□□ 1.47
MKS1-210ENST00000581180 ZCCHC11Q5TAX3 1644 aaKnown RBP24.19■■□□□ 1.46
MKS1-210ENST00000581180 NUP153P49790 1475 aaKnown RBP24.19■■□□□ 1.46
MKS1-210ENST00000581180 PCF11O94913 1555 aaKnown RBP24.16■■□□□ 1.46
MKS1-210ENST00000581180 NPM1P06748 294 aaKnown RBP eCLIP24.15■■□□□ 1.46
MKS1-210ENST00000581180 HECW1Q76N89 1606 aa24.14■■□□□ 1.46
MKS1-210ENST00000581180 CASKIN1Q8WXD9 1431 aa24.14■■□□□ 1.45
MKS1-210ENST00000581180 MAPKBP1O60336 1514 aa24.14■■□□□ 1.45
MKS1-210ENST00000581180 ATP10BO94823 1461 aa24.13■■□□□ 1.45
MKS1-210ENST00000581180 LRRIQ1Q96JM4 1722 aa24.13■■□□□ 1.45
MKS1-210ENST00000581180 FYCO1Q9BQS8 1478 aa24.1■■□□□ 1.45
MKS1-210ENST00000581180 VPS8Q8N3P4 1428 aa24.09■■□□□ 1.45
MKS1-210ENST00000581180 EPRSP07814 1512 aaKnown RBP24.07■■□□□ 1.44
MKS1-210ENST00000581180 ARID3CA6NKF2 412 aa24.06■■□□□ 1.44
MKS1-210ENST00000581180 ASXL2Q76L83 1435 aa24.05■■□□□ 1.44
MKS1-210ENST00000581180 CDK13Q14004 1512 aaKnown RBP24.05■■□□□ 1.44
MKS1-210ENST00000581180 ATP1B4Q9UN42 357 aaPredicted RBP24.03■■□□□ 1.44
MKS1-210ENST00000581180 KIF13AQ9H1H9 1805 aa24■■□□□ 1.43
MKS1-210ENST00000581180 CCDC18Q5T9S5 1454 aa24■■□□□ 1.43
MKS1-210ENST00000581180 WDR7Q9Y4E6 1490 aa23.99■■□□□ 1.43
MKS1-210ENST00000581180 ABCC10Q5T3U5 1492 aa23.97■■□□□ 1.43
MKS1-210ENST00000581180 DIP2BQ9P265 1576 aa23.97■■□□□ 1.43
MKS1-210ENST00000581180 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.96■■□□□ 1.43
MKS1-210ENST00000581180 HNRNPUL2Q1KMD3 747 aaKnown RBP23.96■■□□□ 1.43
MKS1-210ENST00000581180 PLEKHD1A6NEE1 506 aa23.91■■□□□ 1.42
MKS1-210ENST00000581180 CFAP43Q8NDM7 1665 aa23.91■■□□□ 1.42
MKS1-210ENST00000581180 GLI2P10070 1586 aa23.91■■□□□ 1.42
MKS1-210ENST00000581180 MAGI3Q5TCQ9 1506 aa23.89■■□□□ 1.41
MKS1-210ENST00000581180 CDK11AQ9UQ88 783 aaPredicted RBP23.87■■□□□ 1.41
MKS1-210ENST00000581180 TIAM1Q13009 1591 aa23.86■■□□□ 1.41
MKS1-210ENST00000581180 MAP3K1Q13233 1512 aa23.86■■□□□ 1.41
MKS1-210ENST00000581180 TRHP20396 242 aaPredicted RBP23.86■■□□□ 1.41
MKS1-210ENST00000581180 FAM69CQ0P6D2 419 aa23.86■■□□□ 1.41
MKS1-210ENST00000581180 TROQ12816 1431 aaPredicted RBP23.85■■□□□ 1.41
MKS1-210ENST00000581180 KCNH8Q96L42 1107 aa23.85■■□□□ 1.41
MKS1-210ENST00000581180 ABCA9Q8IUA7 1624 aa23.82■■□□□ 1.4
MKS1-210ENST00000581180 MAP3K4Q9Y6R4 1608 aa23.82■■□□□ 1.4
MKS1-210ENST00000581180 KIF14Q15058 1648 aa23.8■■□□□ 1.4
MKS1-210ENST00000581180 TSPOAP1O95153 1857 aa23.79■■□□□ 1.4
MKS1-210ENST00000581180 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.78■■□□□ 1.4
MKS1-210ENST00000581180 EHBP1L1Q8N3D4 1523 aa23.77■■□□□ 1.4
MKS1-210ENST00000581180 PPRC1Q5VV67 1664 aaKnown RBP23.76■■□□□ 1.39
MKS1-210ENST00000581180 MTUS2Q5JR59 1369 aa23.76■■□□□ 1.39
MKS1-210ENST00000581180 TTC37Q6PGP7 1564 aa23.75■■□□□ 1.39
MKS1-210ENST00000581180 LRRC9Q6ZRR7 1453 aa23.75■■□□□ 1.39
MKS1-210ENST00000581180 APLP2Q06481 763 aa23.72■■□□□ 1.39
MKS1-210ENST00000581180 CD109Q6YHK3 1445 aa23.72■■□□□ 1.39
MKS1-210ENST00000581180 KANK4Q5T7N3 995 aaPredicted RBP23.71■■□□□ 1.39
MKS1-210ENST00000581180 SUPT6HQ7KZ85 1726 aaKnown RBP23.68■■□□□ 1.38
MKS1-210ENST00000581180 MYO5CQ9NQX4 1742 aa23.68■■□□□ 1.38
MKS1-210ENST00000581180 CDC42BPAQ5VT25 1732 aa23.66■■□□□ 1.38
MKS1-210ENST00000581180 CDC42BPBQ9Y5S2 1711 aa23.64■■□□□ 1.37
MKS1-210ENST00000581180 NCOA2Q15596 1464 aa23.62■■□□□ 1.37
MKS1-210ENST00000581180 PLCH2O75038 1416 aa23.62■■□□□ 1.37
MKS1-210ENST00000581180 ARAP3Q8WWN8 1544 aa23.62■■□□□ 1.37
MKS1-210ENST00000581180 PREX2Q70Z35 1606 aa23.62■■□□□ 1.37
MKS1-210ENST00000581180 TEX14Q8IWB6 1497 aa23.62■■□□□ 1.37
MKS1-210ENST00000581180 GPATCH8Q9UKJ3 1502 aaKnown RBP23.59■■□□□ 1.37
MKS1-210ENST00000581180 ITSN2Q9NZM3 1697 aa23.56■■□□□ 1.36
MKS1-210ENST00000581180 CCNB3Q8WWL7 1395 aa23.55■■□□□ 1.36
MKS1-210ENST00000581180 NEO1Q92859 1461 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms