RNA–Protein interactions for RNA: ENST00000580986.1

CCDC47-203, Transcript of coiled-coil domain containing 47, humanhuman

TSL 4

Gene CCDC47, Length 552 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-203ENST00000580986 CARMIL1Q5VZK9 1371 aa17.27■□□□□ 0.35
CCDC47-203ENST00000580986 CSRNP3Q8WYN3 585 aa17.26■□□□□ 0.35
CCDC47-203ENST00000580986 GRIN2AQ12879 1464 aa17.24■□□□□ 0.35
CCDC47-203ENST00000580986 CHD1O14646 1710 aa17.24■□□□□ 0.35
CCDC47-203ENST00000580986 CACNB1Q02641 598 aaPredicted RBP17.24■□□□□ 0.35
CCDC47-203ENST00000580986 KIF21BO75037 1637 aa17.24■□□□□ 0.35
CCDC47-203ENST00000580986 RAPGEF2Q9Y4G8 1499 aa17.23■□□□□ 0.35
CCDC47-203ENST00000580986 HOXD11P31277 338 aaPredicted RBP17.19■□□□□ 0.34
CCDC47-203ENST00000580986 CHMP7Q8WUX9 453 aaPredicted RBP17.19■□□□□ 0.34
CCDC47-203ENST00000580986 NUP160Q12769 1436 aa17.18■□□□□ 0.34
CCDC47-203ENST00000580986 CNKSR2Q8WXI2 1034 aa17.14■□□□□ 0.33
CCDC47-203ENST00000580986 CEP170Q5SW79 1584 aa17.13■□□□□ 0.33
CCDC47-203ENST00000580986 FAM9AQ8IZU1 332 aaPredicted RBP17.12■□□□□ 0.33
CCDC47-203ENST00000580986 GOLGA3Q08378 1498 aa17.12■□□□□ 0.33
CCDC47-203ENST00000580986 CLASP1Q7Z460 1538 aa17.11■□□□□ 0.33
CCDC47-203ENST00000580986 FBLN2P98095 1184 aa17.1■□□□□ 0.33
CCDC47-203ENST00000580986 OSCARQ8IYS5 282 aa17.1■□□□□ 0.33
CCDC47-203ENST00000580986 KIAA0586Q9BVV6 1533 aa17.09■□□□□ 0.33
CCDC47-203ENST00000580986 CTTNBP2Q8WZ74 1663 aa17.09■□□□□ 0.33
CCDC47-203ENST00000580986 IQGAP2Q13576 1575 aa17.04■□□□□ 0.32
CCDC47-203ENST00000580986 SHROOM2Q13796 1616 aa17.03■□□□□ 0.32
CCDC47-203ENST00000580986 RNF216Q9NWF9 866 aaPredicted RBP17.03■□□□□ 0.32
CCDC47-203ENST00000580986 UGGT2Q9NYU1 1516 aa16.98■□□□□ 0.31
CCDC47-203ENST00000580986 TNIKQ9UKE5 1360 aa16.96■□□□□ 0.31
CCDC47-203ENST00000580986 RNF39Q9H2S5 420 aa16.95■□□□□ 0.3
CCDC47-203ENST00000580986 JPH4Q96JJ6 628 aa16.92■□□□□ 0.3
CCDC47-203ENST00000580986 UBTFP17480 764 aaKnown RBP16.91■□□□□ 0.3
CCDC47-203ENST00000580986 EFCAB5A4FU69 1503 aa16.91■□□□□ 0.3
CCDC47-203ENST00000580986 SAMD9Q5K651 1589 aa16.89■□□□□ 0.3
CCDC47-203ENST00000580986 CARMIL2Q6F5E8 1435 aa16.87■□□□□ 0.29
CCDC47-203ENST00000580986 DISP1Q96F81 1524 aa16.87■□□□□ 0.29
CCDC47-203ENST00000580986 KIAA0556O60303 1618 aa16.87■□□□□ 0.29
CCDC47-203ENST00000580986 PRG4Q92954 1404 aaPredicted RBP16.87■□□□□ 0.29
CCDC47-203ENST00000580986 ARHGEF11O15085 1522 aa16.86■□□□□ 0.29
CCDC47-203ENST00000580986 DNAJC5Q9H3Z4 198 aa16.83■□□□□ 0.28
CCDC47-203ENST00000580986 RIMBP3CA6NJZ7 1639 aa16.81■□□□□ 0.28
CCDC47-203ENST00000580986 RIMBP3BA6NNM3 1639 aa16.81■□□□□ 0.28
CCDC47-203ENST00000580986 RIMBP3Q9UFD9 1639 aa16.81■□□□□ 0.28
CCDC47-203ENST00000580986 ERCC6L2Q5T890 1561 aa16.81■□□□□ 0.28
CCDC47-203ENST00000580986 LOC105371045A0A1W2PR82 267 aa16.8■□□□□ 0.28
CCDC47-203ENST00000580986 ARHGAP35Q9NRY4 1499 aa16.8■□□□□ 0.28
CCDC47-203ENST00000580986 CEP162Q5TB80 1403 aa16.79■□□□□ 0.28
CCDC47-203ENST00000580986 CLIP1P30622 1438 aa16.78■□□□□ 0.28
CCDC47-203ENST00000580986 EHMT2Q96KQ7 1210 aa16.77■□□□□ 0.28
CCDC47-203ENST00000580986 ARAP1Q96P48 1450 aa16.74■□□□□ 0.27
CCDC47-203ENST00000580986 NCBP3Q53F19 620 aaKnown RBP16.72■□□□□ 0.27
CCDC47-203ENST00000580986 PTPRGP23470 1445 aa16.71■□□□□ 0.27
CCDC47-203ENST00000580986 C1QBPQ07021 282 aaKnown RBP16.71■□□□□ 0.27
CCDC47-203ENST00000580986 FMN1Q68DA7 1419 aa16.7■□□□□ 0.26
CCDC47-203ENST00000580986 FHOD3Q2V2M9 1422 aa16.7■□□□□ 0.26
CCDC47-203ENST00000580986 UHRF1BP1LA0JNW5 1464 aa16.67■□□□□ 0.26
CCDC47-203ENST00000580986 ABCA8O94911 1581 aa16.67■□□□□ 0.26
CCDC47-203ENST00000580986 ABCC2Q92887 1545 aa16.65■□□□□ 0.26
CCDC47-203ENST00000580986 UACAQ9BZF9 1416 aa16.64■□□□□ 0.25
CCDC47-203ENST00000580986 RAPGEF6Q8TEU7 1601 aa16.63■□□□□ 0.25
CCDC47-203ENST00000580986 RANGAP1P46060 587 aaPredicted RBP16.63■□□□□ 0.25
CCDC47-203ENST00000580986 PLB1Q6P1J6 1458 aa16.61■□□□□ 0.25
CCDC47-203ENST00000580986 ADCY10Q96PN6 1610 aa16.61■□□□□ 0.25
CCDC47-203ENST00000580986 P3H3Q8IVL6 736 aa16.61■□□□□ 0.25
CCDC47-203ENST00000580986 FYCO1Q9BQS8 1478 aa16.61■□□□□ 0.25
CCDC47-203ENST00000580986 VPS8Q8N3P4 1428 aa16.6■□□□□ 0.25
CCDC47-203ENST00000580986 CASKIN1Q8WXD9 1431 aa16.6■□□□□ 0.25
CCDC47-203ENST00000580986 HECW1Q76N89 1606 aa16.59■□□□□ 0.25
CCDC47-203ENST00000580986 PCF11O94913 1555 aaKnown RBP16.58■□□□□ 0.24
CCDC47-203ENST00000580986 KDM5BQ9UGL1 1544 aa16.57■□□□□ 0.24
CCDC47-203ENST00000580986 CYB5RLQ6IPT4 315 aa16.57■□□□□ 0.24
CCDC47-203ENST00000580986 NUP153P49790 1475 aaKnown RBP16.56■□□□□ 0.24
CCDC47-203ENST00000580986 CCDC18Q5T9S5 1454 aa16.53■□□□□ 0.24
CCDC47-203ENST00000580986 MAPKBP1O60336 1514 aa16.51■□□□□ 0.23
CCDC47-203ENST00000580986 ZCCHC11Q5TAX3 1644 aaKnown RBP16.51■□□□□ 0.23
CCDC47-203ENST00000580986 EPRSP07814 1512 aaKnown RBP16.5■□□□□ 0.23
CCDC47-203ENST00000580986 MAP3K1Q13233 1512 aa16.5■□□□□ 0.23
CCDC47-203ENST00000580986 ATP10BO94823 1461 aa16.49■□□□□ 0.23
CCDC47-203ENST00000580986 TTBK1Q5TCY1 1321 aaPredicted RBP16.48■□□□□ 0.23
CCDC47-203ENST00000580986 LRRIQ1Q96JM4 1722 aa16.48■□□□□ 0.23
CCDC47-203ENST00000580986 CFAP43Q8NDM7 1665 aa16.46■□□□□ 0.23
CCDC47-203ENST00000580986 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.45■□□□□ 0.226e-14■□□□□ 8.7
CCDC47-203ENST00000580986 NPM1P06748 294 aaKnown RBP eCLIP16.44■□□□□ 0.22
CCDC47-203ENST00000580986 CDK13Q14004 1512 aaKnown RBP16.43■□□□□ 0.22
CCDC47-203ENST00000580986 NPM3O75607 178 aaKnown RBP16.42■□□□□ 0.22
CCDC47-203ENST00000580986 TIAM1Q13009 1591 aa16.42■□□□□ 0.22
CCDC47-203ENST00000580986 WDR7Q9Y4E6 1490 aa16.41■□□□□ 0.22
CCDC47-203ENST00000580986 ASXL2Q76L83 1435 aa16.39■□□□□ 0.21
CCDC47-203ENST00000580986 CDK11AQ9UQ88 783 aaPredicted RBP16.39■□□□□ 0.21
CCDC47-203ENST00000580986 TROQ12816 1431 aaPredicted RBP16.36■□□□□ 0.21
CCDC47-203ENST00000580986 EHBP1L1Q8N3D4 1523 aa16.36■□□□□ 0.21
CCDC47-203ENST00000580986 ATP1B4Q9UN42 357 aaPredicted RBP16.35■□□□□ 0.21
CCDC47-203ENST00000580986 GLI2P10070 1586 aa16.34■□□□□ 0.21
CCDC47-203ENST00000580986 PLEKHD1A6NEE1 506 aa16.34■□□□□ 0.21
CCDC47-203ENST00000580986 ABCC10Q5T3U5 1492 aa16.34■□□□□ 0.21
CCDC47-203ENST00000580986 MAGI3Q5TCQ9 1506 aa16.34■□□□□ 0.21
CCDC47-203ENST00000580986 LRRC9Q6ZRR7 1453 aa16.33■□□□□ 0.2
CCDC47-203ENST00000580986 DIP2BQ9P265 1576 aa16.33■□□□□ 0.2
CCDC47-203ENST00000580986 KIF14Q15058 1648 aa16.33■□□□□ 0.2
CCDC47-203ENST00000580986 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.31■□□□□ 0.2
CCDC47-203ENST00000580986 APLP2Q06481 763 aa16.31■□□□□ 0.2
CCDC47-203ENST00000580986 HNRNPUL2Q1KMD3 747 aaKnown RBP16.31■□□□□ 0.2
CCDC47-203ENST00000580986 ABCA9Q8IUA7 1624 aa16.3■□□□□ 0.2
CCDC47-203ENST00000580986 MTUS2Q5JR59 1369 aa16.3■□□□□ 0.2
CCDC47-203ENST00000580986 ARID3CA6NKF2 412 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms