RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CARMIL1Q5VZK9 1371 aa16.78■□□□□ 0.28
SS18-217ENST00000580958 ZNF608Q9ULD9 1512 aaPredicted RBP16.72■□□□□ 0.27
SS18-217ENST00000580958 AQRO60306 1485 aaKnown RBP eCLIP16.72■□□□□ 0.27
SS18-217ENST00000580958 EIF4G3O43432 1585 aaKnown RBP16.71■□□□□ 0.27
SS18-217ENST00000580958 CLIP1P30622 1438 aa16.7■□□□□ 0.26
SS18-217ENST00000580958 CTTNBP2Q8WZ74 1663 aa16.69■□□□□ 0.26
SS18-217ENST00000580958 ADAMTS12P58397 1594 aa16.68■□□□□ 0.26
SS18-217ENST00000580958 GRIN2BQ13224 1484 aa16.67■□□□□ 0.26
SS18-217ENST00000580958 RANGAP1P46060 587 aaPredicted RBP16.63■□□□□ 0.25
SS18-217ENST00000580958 FHAD1B1AJZ9 1412 aa16.6■□□□□ 0.25
SS18-217ENST00000580958 SNAPC4Q5SXM2 1469 aa16.59■□□□□ 0.25
SS18-217ENST00000580958 ARAP1Q96P48 1450 aa16.57■□□□□ 0.24
SS18-217ENST00000580958 ARHGAP35Q9NRY4 1499 aa16.56■□□□□ 0.24
SS18-217ENST00000580958 VPS8Q8N3P4 1428 aa16.54■□□□□ 0.24
SS18-217ENST00000580958 MAGI1Q96QZ7 1491 aaPredicted RBP16.53■□□□□ 0.24
SS18-217ENST00000580958 CNKSR2Q8WXI2 1034 aa16.49■□□□□ 0.23
SS18-217ENST00000580958 EFCAB5A4FU69 1503 aa16.49■□□□□ 0.23
SS18-217ENST00000580958 GRIN2AQ12879 1464 aa16.48■□□□□ 0.23
SS18-217ENST00000580958 PPARGC1BQ86YN6 1023 aaKnown RBP16.47■□□□□ 0.23
SS18-217ENST00000580958 SYNJ2O15056 1496 aa16.47■□□□□ 0.23
SS18-217ENST00000580958 IQGAP2Q13576 1575 aa16.46■□□□□ 0.23
SS18-217ENST00000580958 SAMD9Q5K651 1589 aa16.46■□□□□ 0.23
SS18-217ENST00000580958 DCAF8L1A6NGE4 600 aa16.45■□□□□ 0.22
SS18-217ENST00000580958 CHD1O14646 1710 aa16.42■□□□□ 0.22
SS18-217ENST00000580958 PCGF6Q9BYE7 350 aa16.42■□□□□ 0.22
SS18-217ENST00000580958 TRIM26Q12899 539 aaPredicted RBP16.41■□□□□ 0.22
SS18-217ENST00000580958 FHOD3Q2V2M9 1422 aa16.41■□□□□ 0.22
SS18-217ENST00000580958 CEP170Q5SW79 1584 aa16.41■□□□□ 0.22
SS18-217ENST00000580958 HOXD11P31277 338 aaPredicted RBP16.4■□□□□ 0.22
SS18-217ENST00000580958 P3H3Q8IVL6 736 aa16.39■□□□□ 0.21
SS18-217ENST00000580958 CHMP7Q8WUX9 453 aaPredicted RBP16.39■□□□□ 0.21
SS18-217ENST00000580958 KIAA0586Q9BVV6 1533 aa16.37■□□□□ 0.21
SS18-217ENST00000580958 PCF11O94913 1555 aaKnown RBP16.37■□□□□ 0.21
SS18-217ENST00000580958 UGGT2Q9NYU1 1516 aa16.36■□□□□ 0.21
SS18-217ENST00000580958 FBLN2P98095 1184 aa16.36■□□□□ 0.21
SS18-217ENST00000580958 APLP2Q06481 763 aa16.35■□□□□ 0.21
SS18-217ENST00000580958 TTBK1Q5TCY1 1321 aaPredicted RBP16.35■□□□□ 0.21
SS18-217ENST00000580958 NUP160Q12769 1436 aa16.34■□□□□ 0.21
SS18-217ENST00000580958 RNF216Q9NWF9 866 aaPredicted RBP16.33■□□□□ 0.2
SS18-217ENST00000580958 CFAP43Q8NDM7 1665 aa16.31■□□□□ 0.2
SS18-217ENST00000580958 KIAA0556O60303 1618 aa16.3■□□□□ 0.2
SS18-217ENST00000580958 FMN1Q68DA7 1419 aa16.29■□□□□ 0.2
SS18-217ENST00000580958 TIAM1Q13009 1591 aa16.29■□□□□ 0.2
SS18-217ENST00000580958 FYCO1Q9BQS8 1478 aa16.29■□□□□ 0.2
SS18-217ENST00000580958 LRRIQ1Q96JM4 1722 aa16.28■□□□□ 0.2
SS18-217ENST00000580958 CASKIN1Q8WXD9 1431 aa16.28■□□□□ 0.2
SS18-217ENST00000580958 DISP1Q96F81 1524 aa16.27■□□□□ 0.2
SS18-217ENST00000580958 MAP3K1Q13233 1512 aa16.26■□□□□ 0.19
SS18-217ENST00000580958 NCBP3Q53F19 620 aaKnown RBP16.24■□□□□ 0.19
SS18-217ENST00000580958 KANK4Q5T7N3 995 aaPredicted RBP16.22■□□□□ 0.19
SS18-217ENST00000580958 ATP1B4Q9UN42 357 aaPredicted RBP16.21■□□□□ 0.19
SS18-217ENST00000580958 HECW1Q76N89 1606 aa16.2■□□□□ 0.18
SS18-217ENST00000580958 SHROOM2Q13796 1616 aa16.19■□□□□ 0.18
SS18-217ENST00000580958 JPH4Q96JJ6 628 aa16.18■□□□□ 0.18
SS18-217ENST00000580958 LRRC9Q6ZRR7 1453 aa16.17■□□□□ 0.18
SS18-217ENST00000580958 CARMIL2Q6F5E8 1435 aa16.17■□□□□ 0.18
SS18-217ENST00000580958 RAPGEF6Q8TEU7 1601 aa16.16■□□□□ 0.18
SS18-217ENST00000580958 CLASP1Q7Z460 1538 aa16.15■□□□□ 0.18
SS18-217ENST00000580958 CACNB1Q02641 598 aaPredicted RBP16.13■□□□□ 0.17
SS18-217ENST00000580958 CCDC18Q5T9S5 1454 aa16.12■□□□□ 0.17
SS18-217ENST00000580958 PRG4Q92954 1404 aaPredicted RBP16.11■□□□□ 0.17
SS18-217ENST00000580958 EPRSP07814 1512 aaKnown RBP16.09■□□□□ 0.17
SS18-217ENST00000580958 CDK13Q14004 1512 aaKnown RBP16.09■□□□□ 0.17
SS18-217ENST00000580958 EHBP1L1Q8N3D4 1523 aa16.07■□□□□ 0.16
SS18-217ENST00000580958 ERCC6L2Q5T890 1561 aa16.07■□□□□ 0.16
SS18-217ENST00000580958 SUPT6HQ7KZ85 1726 aaKnown RBP16.06■□□□□ 0.16
SS18-217ENST00000580958 ABCA8O94911 1581 aa16.06■□□□□ 0.16
SS18-217ENST00000580958 NUP153P49790 1475 aaKnown RBP16.06■□□□□ 0.16
SS18-217ENST00000580958 MAGI3Q5TCQ9 1506 aa16.05■□□□□ 0.16
SS18-217ENST00000580958 PLB1Q6P1J6 1458 aa16.05■□□□□ 0.16
SS18-217ENST00000580958 RRBP1Q9P2E9 1410 aaKnown RBP16.04■□□□□ 0.16
SS18-217ENST00000580958 MTUS2Q5JR59 1369 aa16.04■□□□□ 0.16
SS18-217ENST00000580958 ARID3CA6NKF2 412 aa16.02■□□□□ 0.16
SS18-217ENST00000580958 RNF39Q9H2S5 420 aa16.02■□□□□ 0.16
SS18-217ENST00000580958 PHLDB1Q86UU1 1377 aa16.01■□□□□ 0.15
SS18-217ENST00000580958 PTPRGP23470 1445 aa16■□□□□ 0.15
SS18-217ENST00000580958 NCOA2Q15596 1464 aa15.98■□□□□ 0.15
SS18-217ENST00000580958 CCNB3Q8WWL7 1395 aa15.98■□□□□ 0.15
SS18-217ENST00000580958 HNRNPUL2Q1KMD3 747 aaKnown RBP15.97■□□□□ 0.15
SS18-217ENST00000580958 ARHGEF11O15085 1522 aa15.96■□□□□ 0.15
SS18-217ENST00000580958 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.93■□□□□ 0.14
SS18-217ENST00000580958 HRCP23327 699 aa15.93■□□□□ 0.14
SS18-217ENST00000580958 ADCY10Q96PN6 1610 aa15.93■□□□□ 0.14
SS18-217ENST00000580958 UACAQ9BZF9 1416 aa15.92■□□□□ 0.14
SS18-217ENST00000580958 ATP10BO94823 1461 aa15.91■□□□□ 0.14
SS18-217ENST00000580958 NPM3O75607 178 aaKnown RBP15.91■□□□□ 0.14
SS18-217ENST00000580958 MYOM3Q5VTT5 1437 aa15.91■□□□□ 0.14
SS18-217ENST00000580958 FGD6Q6ZV73 1430 aa15.91■□□□□ 0.14
SS18-217ENST00000580958 ABCC2Q92887 1545 aa15.9■□□□□ 0.14
SS18-217ENST00000580958 OSCARQ8IYS5 282 aa15.9■□□□□ 0.14
SS18-217ENST00000580958 CDK11AQ9UQ88 783 aaPredicted RBP15.9■□□□□ 0.14
SS18-217ENST00000580958 TROQ12816 1431 aaPredicted RBP15.9■□□□□ 0.14
SS18-217ENST00000580958 KIF14Q15058 1648 aa15.9■□□□□ 0.14
SS18-217ENST00000580958 PTPN23Q9H3S7 1636 aa15.89■□□□□ 0.13
SS18-217ENST00000580958 FAM50AQ14320 339 aaKnown RBP15.87■□□□□ 0.13
SS18-217ENST00000580958 ITSN2Q9NZM3 1697 aa15.86■□□□□ 0.13
SS18-217ENST00000580958 ITGAEP38570 1179 aa15.85■□□□□ 0.13
SS18-217ENST00000580958 ZCCHC11Q5TAX3 1644 aaKnown RBP15.85■□□□□ 0.13
SS18-217ENST00000580958 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.84■□□□□ 0.13
SS18-217ENST00000580958 UHRF1BP1LA0JNW5 1464 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms