RNA–Protein interactions for RNA: ENST00000580541.1

SKA2-205, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3 BASIC

Gene SKA2, Length 689 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-205ENST00000580541 KIAA0586Q9BVV6 1533 aa23.13■■□□□ 1.29
SKA2-205ENST00000580541 CEP170Q5SW79 1584 aa23.1■■□□□ 1.29
SKA2-205ENST00000580541 LOC105371045A0A1W2PR82 267 aa23.06■■□□□ 1.28
SKA2-205ENST00000580541 JPH4Q96JJ6 628 aa23.06■■□□□ 1.28
SKA2-205ENST00000580541 CTTNBP2Q8WZ74 1663 aa23.03■■□□□ 1.28
SKA2-205ENST00000580541 TNIKQ9UKE5 1360 aa23.03■■□□□ 1.28
SKA2-205ENST00000580541 CLASP1Q7Z460 1538 aa23.02■■□□□ 1.28
SKA2-205ENST00000580541 IQGAP2Q13576 1575 aa23.01■■□□□ 1.27
SKA2-205ENST00000580541 CARMIL2Q6F5E8 1435 aa22.94■■□□□ 1.26
SKA2-205ENST00000580541 RANGAP1P46060 587 aaPredicted RBP22.91■■□□□ 1.26
SKA2-205ENST00000580541 UGGT2Q9NYU1 1516 aa22.91■■□□□ 1.26
SKA2-205ENST00000580541 PRG4Q92954 1404 aaPredicted RBP22.9■■□□□ 1.26
SKA2-205ENST00000580541 SHROOM2Q13796 1616 aa22.9■■□□□ 1.26
SKA2-205ENST00000580541 DNAJC5Q9H3Z4 198 aa22.85■■□□□ 1.25
SKA2-205ENST00000580541 EFCAB5A4FU69 1503 aa22.82■■□□□ 1.24
SKA2-205ENST00000580541 CLIP1P30622 1438 aa22.81■■□□□ 1.24
SKA2-205ENST00000580541 CEP162Q5TB80 1403 aa22.79■■□□□ 1.24
SKA2-205ENST00000580541 DISP1Q96F81 1524 aa22.78■■□□□ 1.24
SKA2-205ENST00000580541 P3H3Q8IVL6 736 aa22.78■■□□□ 1.24
SKA2-205ENST00000580541 ARHGEF11O15085 1522 aa22.76■■□□□ 1.23
SKA2-205ENST00000580541 KIAA0556O60303 1618 aa22.75■■□□□ 1.23
SKA2-205ENST00000580541 SAMD9Q5K651 1589 aa22.75■■□□□ 1.23
SKA2-205ENST00000580541 PTPRGP23470 1445 aa22.74■■□□□ 1.23
SKA2-205ENST00000580541 ARHGAP35Q9NRY4 1499 aa22.72■■□□□ 1.23
SKA2-205ENST00000580541 RIMBP3CA6NJZ7 1639 aa22.69■■□□□ 1.22
SKA2-205ENST00000580541 RIMBP3BA6NNM3 1639 aa22.69■■□□□ 1.22
SKA2-205ENST00000580541 RIMBP3Q9UFD9 1639 aa22.69■■□□□ 1.22
SKA2-205ENST00000580541 TTBK1Q5TCY1 1321 aaPredicted RBP22.69■■□□□ 1.22
SKA2-205ENST00000580541 ERCC6L2Q5T890 1561 aa22.68■■□□□ 1.22
SKA2-205ENST00000580541 FHOD3Q2V2M9 1422 aa22.66■■□□□ 1.22
SKA2-205ENST00000580541 FMN1Q68DA7 1419 aa22.66■■□□□ 1.22
SKA2-205ENST00000580541 CYB5RLQ6IPT4 315 aa22.65■■□□□ 1.22
SKA2-205ENST00000580541 ARAP1Q96P48 1450 aa22.6■■□□□ 1.21
SKA2-205ENST00000580541 UACAQ9BZF9 1416 aa22.57■■□□□ 1.2
SKA2-205ENST00000580541 NPM1P06748 294 aaKnown RBP eCLIP22.55■■□□□ 1.2
SKA2-205ENST00000580541 ATP1B4Q9UN42 357 aaPredicted RBP22.54■■□□□ 1.2
SKA2-205ENST00000580541 VPS8Q8N3P4 1428 aa22.5■■□□□ 1.19
SKA2-205ENST00000580541 UHRF1BP1LA0JNW5 1464 aa22.5■■□□□ 1.19
SKA2-205ENST00000580541 PLB1Q6P1J6 1458 aa22.49■■□□□ 1.19
SKA2-205ENST00000580541 CASKIN1Q8WXD9 1431 aa22.48■■□□□ 1.19
SKA2-205ENST00000580541 ABCA8O94911 1581 aa22.48■■□□□ 1.19
SKA2-205ENST00000580541 RAPGEF6Q8TEU7 1601 aa22.48■■□□□ 1.19
SKA2-205ENST00000580541 APLP2Q06481 763 aa22.47■■□□□ 1.19
SKA2-205ENST00000580541 ABCC2Q92887 1545 aa22.47■■□□□ 1.19
SKA2-205ENST00000580541 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.44■■□□□ 1.18
SKA2-205ENST00000580541 HNRNPUL2Q1KMD3 747 aaKnown RBP22.44■■□□□ 1.18
SKA2-205ENST00000580541 FYCO1Q9BQS8 1478 aa22.44■■□□□ 1.18
SKA2-205ENST00000580541 CDK11AQ9UQ88 783 aaPredicted RBP22.43■■□□□ 1.18
SKA2-205ENST00000580541 HECW1Q76N89 1606 aa22.42■■□□□ 1.18
SKA2-205ENST00000580541 ADCY10Q96PN6 1610 aa22.39■■□□□ 1.18
SKA2-205ENST00000580541 NUP153P49790 1475 aaKnown RBP22.38■■□□□ 1.17
SKA2-205ENST00000580541 KDM5BQ9UGL1 1544 aa22.37■■□□□ 1.17
SKA2-205ENST00000580541 CCDC18Q5T9S5 1454 aa22.37■■□□□ 1.17
SKA2-205ENST00000580541 PCF11O94913 1555 aaKnown RBP22.37■■□□□ 1.17
SKA2-205ENST00000580541 PLEKHD1A6NEE1 506 aa22.36■■□□□ 1.17
SKA2-205ENST00000580541 ARID3CA6NKF2 412 aa22.35■■□□□ 1.17
SKA2-205ENST00000580541 ATP10BO94823 1461 aa22.34■■□□□ 1.17
SKA2-205ENST00000580541 EPRSP07814 1512 aaKnown RBP22.34■■□□□ 1.17
SKA2-205ENST00000580541 ZCCHC11Q5TAX3 1644 aaKnown RBP22.28■■□□□ 1.16
SKA2-205ENST00000580541 MAP3K1Q13233 1512 aa22.28■■□□□ 1.16
SKA2-205ENST00000580541 PHF23Q9BUL5 403 aaPredicted RBP22.27■■□□□ 1.16
SKA2-205ENST00000580541 CDK13Q14004 1512 aaKnown RBP22.24■■□□□ 1.15
SKA2-205ENST00000580541 ASXL2Q76L83 1435 aa22.23■■□□□ 1.15
SKA2-205ENST00000580541 MAPKBP1O60336 1514 aa22.22■■□□□ 1.15
SKA2-205ENST00000580541 MTUS2Q5JR59 1369 aa22.22■■□□□ 1.15
SKA2-205ENST00000580541 TIAM1Q13009 1591 aa22.2■■□□□ 1.14
SKA2-205ENST00000580541 KCNH8Q96L42 1107 aa22.19■■□□□ 1.14
SKA2-205ENST00000580541 WDR7Q9Y4E6 1490 aa22.19■■□□□ 1.14
SKA2-205ENST00000580541 LRRIQ1Q96JM4 1722 aa22.19■■□□□ 1.14
SKA2-205ENST00000580541 TROQ12816 1431 aaPredicted RBP22.17■■□□□ 1.14
SKA2-205ENST00000580541 CFAP43Q8NDM7 1665 aa22.15■■□□□ 1.14
SKA2-205ENST00000580541 LRRC9Q6ZRR7 1453 aa22.14■■□□□ 1.13
SKA2-205ENST00000580541 KANK4Q5T7N3 995 aaPredicted RBP22.11■■□□□ 1.13
SKA2-205ENST00000580541 EHBP1L1Q8N3D4 1523 aa22.11■■□□□ 1.13
SKA2-205ENST00000580541 SENP3Q9H4L4 574 aaPredicted RBP22.1■■□□□ 1.13
SKA2-205ENST00000580541 FAM69CQ0P6D2 419 aa22.09■■□□□ 1.13
SKA2-205ENST00000580541 ABCC10Q5T3U5 1492 aa22.09■■□□□ 1.13
SKA2-205ENST00000580541 TRHP20396 242 aaPredicted RBP22.07■■□□□ 1.12
SKA2-205ENST00000580541 KIF14Q15058 1648 aa22.06■■□□□ 1.12
SKA2-205ENST00000580541 MAGI3Q5TCQ9 1506 aa22.04■■□□□ 1.12
SKA2-205ENST00000580541 SUPT6HQ7KZ85 1726 aaKnown RBP22.03■■□□□ 1.12
SKA2-205ENST00000580541 GLI2P10070 1586 aa22.03■■□□□ 1.12
SKA2-205ENST00000580541 CCNB3Q8WWL7 1395 aa22■■□□□ 1.11
SKA2-205ENST00000580541 PPARGC1BQ86YN6 1023 aaKnown RBP21.99■■□□□ 1.11
SKA2-205ENST00000580541 DIP2BQ9P265 1576 aa21.99■■□□□ 1.11
SKA2-205ENST00000580541 CD109Q6YHK3 1445 aa21.98■■□□□ 1.11
SKA2-205ENST00000580541 NCOA2Q15596 1464 aa21.97■■□□□ 1.11
SKA2-205ENST00000580541 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.97■■□□□ 1.11
SKA2-205ENST00000580541 ABCA9Q8IUA7 1624 aa21.97■■□□□ 1.11
SKA2-205ENST00000580541 EFCAB2Q5VUJ9 269 aa21.94■■□□□ 1.1
SKA2-205ENST00000580541 CFDP1Q9UEE9 299 aaPredicted RBP21.94■■□□□ 1.1
SKA2-205ENST00000580541 PLCH2O75038 1416 aa21.93■■□□□ 1.1
SKA2-205ENST00000580541 KIF13AQ9H1H9 1805 aa21.92■■□□□ 1.1
SKA2-205ENST00000580541 GPATCH8Q9UKJ3 1502 aaKnown RBP21.9■■□□□ 1.1
SKA2-205ENST00000580541 MYO5CQ9NQX4 1742 aa21.89■■□□□ 1.1
SKA2-205ENST00000580541 MAP3K4Q9Y6R4 1608 aa21.89■■□□□ 1.09
SKA2-205ENST00000580541 TTC37Q6PGP7 1564 aa21.89■■□□□ 1.09
SKA2-205ENST00000580541 ARAP3Q8WWN8 1544 aa21.89■■□□□ 1.09
SKA2-205ENST00000580541 TEX14Q8IWB6 1497 aa21.89■■□□□ 1.09
SKA2-205ENST00000580541 PHLDB1Q86UU1 1377 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms