RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 FAM50AQ14320 339 aaKnown RBP15.4■□□□□ 0.06
TOP3A-209ENST00000580095 RRBP1Q9P2E9 1410 aaKnown RBP15.38■□□□□ 0.05
TOP3A-209ENST00000580095 PRKCSHP14314 528 aaPredicted RBP15.34■□□□□ 0.05
TOP3A-209ENST00000580095 FHOD3Q2V2M9 1422 aa15.33■□□□□ 0.04
TOP3A-209ENST00000580095 PHLDB1Q86UU1 1377 aa15.33■□□□□ 0.04
TOP3A-209ENST00000580095 PDS5BQ9NTI5 1447 aa15.32■□□□□ 0.04
TOP3A-209ENST00000580095 RAB3GAP2Q9H2M9 1393 aa15.31■□□□□ 0.04
TOP3A-209ENST00000580095 POLA1P09884 1462 aaPredicted RBP15.31■□□□□ 0.04
TOP3A-209ENST00000580095 TDRD9Q8NDG6 1382 aaKnown RBP15.3■□□□□ 0.04
TOP3A-209ENST00000580095 TOPBP1Q92547 1522 aa15.28■□□□□ 0.04
TOP3A-209ENST00000580095 CLSPNQ9HAW4 1339 aa15.28■□□□□ 0.04
TOP3A-209ENST00000580095 TIAM1Q13009 1591 aa15.27■□□□□ 0.04
TOP3A-209ENST00000580095 LRRC9Q6ZRR7 1453 aa15.27■□□□□ 0.04
TOP3A-209ENST00000580095 SIN3AQ96ST3 1273 aa15.27■□□□□ 0.03
TOP3A-209ENST00000580095 KIF21AQ7Z4S6 1674 aa15.24■□□□□ 0.03
TOP3A-209ENST00000580095 DNMBPQ6XZF7 1577 aa15.23■□□□□ 0.03
TOP3A-209ENST00000580095 PCF11O94913 1555 aaKnown RBP15.22■□□□□ 0.03
TOP3A-209ENST00000580095 ABCA10Q8WWZ4 1543 aa15.22■□□□□ 0.03
TOP3A-209ENST00000580095 FHAD1B1AJZ9 1412 aa15.21■□□□□ 0.03
TOP3A-209ENST00000580095 URB2Q14146 1524 aaKnown RBP15.2■□□□□ 0.02
TOP3A-209ENST00000580095 HIRIP3Q9BW71 556 aaPredicted RBP15.2■□□□□ 0.02
TOP3A-209ENST00000580095 SETD5Q9C0A6 1442 aa15.19■□□□□ 0.02
TOP3A-209ENST00000580095 ARID3CA6NKF2 412 aa15.19■□□□□ 0.02
TOP3A-209ENST00000580095 BCL11AQ9H165 835 aa15.17■□□□□ 0.02
TOP3A-209ENST00000580095 MAPKBP1O60336 1514 aa15.16■□□□□ 0.02
TOP3A-209ENST00000580095 KCNH8Q96L42 1107 aa15.16■□□□□ 0.02
TOP3A-209ENST00000580095 MRC2Q9UBG0 1479 aa15.16■□□□□ 0.02
TOP3A-209ENST00000580095 WDR62O43379 1518 aa15.15■□□□□ 0.02
TOP3A-209ENST00000580095 MAP3K1Q13233 1512 aa15.14■□□□□ 0.01
TOP3A-209ENST00000580095 THOC2Q8NI27 1593 aaKnown RBP15.13■□□□□ 0.01
TOP3A-209ENST00000580095 MTUS2Q5JR59 1369 aa15.12■□□□□ 0.01
TOP3A-209ENST00000580095 CASKIN1Q8WXD9 1431 aa15.11■□□□□ 0.01
TOP3A-209ENST00000580095 GAPVD1Q14C86 1478 aa15.1■□□□□ 0.01
TOP3A-209ENST00000580095 DDX10Q13206 875 aaKnown RBP15.1■□□□□ 0.01
TOP3A-209ENST00000580095 FYCO1Q9BQS8 1478 aa15.09■□□□□ 0.01
TOP3A-209ENST00000580095 CHIC2Q9UKJ5 165 aa15.06■□□□□ 0
TOP3A-209ENST00000580095 CFAP43Q8NDM7 1665 aa15.06■□□□□ 0
TOP3A-209ENST00000580095 FMN1Q68DA7 1419 aa15.06■□□□□ 0
TOP3A-209ENST00000580095 ERCC6Q03468 1493 aa15.06■□□□□ 0
TOP3A-209ENST00000580095 WDR97A6NE52 1622 aa15.06■□□□□ 0
TOP3A-209ENST00000580095 PTPRKQ15262 1439 aa15.05■□□□□ -0
TOP3A-209ENST00000580095 FGD6Q6ZV73 1430 aa15.05■□□□□ -0
TOP3A-209ENST00000580095 EFCAB5A4FU69 1503 aa15.04■□□□□ -0
TOP3A-209ENST00000580095 AQRO60306 1485 aaKnown RBP eCLIP15.04■□□□□ -01e-6■■■■□ 26.1
TOP3A-209ENST00000580095 SNAPC4Q5SXM2 1469 aa15.04■□□□□ -0
TOP3A-209ENST00000580095 CUL7Q14999 1698 aa15.04■□□□□ -0
TOP3A-209ENST00000580095 RRP7BPQ9NSQ0 103 aa15.03■□□□□ -0
TOP3A-209ENST00000580095 CTTNBP2Q8WZ74 1663 aa15□□□□□ -0.01
TOP3A-209ENST00000580095 TARBP1Q13395 1621 aaKnown RBP15□□□□□ -0.01
TOP3A-209ENST00000580095 ABCA5Q8WWZ7 1642 aa14.99□□□□□ -0.01
TOP3A-209ENST00000580095 PPP1R15AO75807 674 aaPredicted RBP14.98□□□□□ -0.01
TOP3A-209ENST00000580095 NCOA2Q15596 1464 aa14.98□□□□□ -0.01
TOP3A-209ENST00000580095 IFT140Q96RY7 1462 aa14.96□□□□□ -0.01
TOP3A-209ENST00000580095 CCDC18Q5T9S5 1454 aa14.95□□□□□ -0.02
TOP3A-209ENST00000580095 GRIN2BQ13224 1484 aa14.94□□□□□ -0.02
TOP3A-209ENST00000580095 TONSLQ96HA7 1378 aa14.94□□□□□ -0.02
TOP3A-209ENST00000580095 TRIM52Q96A61 297 aa14.94□□□□□ -0.02
TOP3A-209ENST00000580095 MYOM3Q5VTT5 1437 aa14.93□□□□□ -0.02
TOP3A-209ENST00000580095 LRRIQ1Q96JM4 1722 aa14.93□□□□□ -0.02
TOP3A-209ENST00000580095 MAGI3Q5TCQ9 1506 aa14.92□□□□□ -0.02
TOP3A-209ENST00000580095 SAMD9Q5K651 1589 aa14.92□□□□□ -0.02
TOP3A-209ENST00000580095 FOXD1Q16676 465 aa14.92□□□□□ -0.02
TOP3A-209ENST00000580095 SUPT16HQ9Y5B9 1047 aaKnown RBP14.92□□□□□ -0.02
TOP3A-209ENST00000580095 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.91□□□□□ -0.02
TOP3A-209ENST00000580095 NAIPQ13075 1403 aa14.91□□□□□ -0.02
TOP3A-209ENST00000580095 HFM1A2PYH4 1435 aa14.9□□□□□ -0.02
TOP3A-209ENST00000580095 ZNF608Q9ULD9 1512 aaPredicted RBP14.89□□□□□ -0.03
TOP3A-209ENST00000580095 CDK13Q14004 1512 aaKnown RBP14.89□□□□□ -0.03
TOP3A-209ENST00000580095 UACAQ9BZF9 1416 aa14.87□□□□□ -0.03
TOP3A-209ENST00000580095 FBLN2P98095 1184 aa14.86□□□□□ -0.03
TOP3A-209ENST00000580095 BCANQ96GW7 911 aa14.86□□□□□ -0.03
TOP3A-209ENST00000580095 ZNF644Q9H582 1327 aaPredicted RBP14.86□□□□□ -0.03
TOP3A-209ENST00000580095 TIMELESSQ9UNS1 1208 aa14.86□□□□□ -0.03
TOP3A-209ENST00000580095 PTPN23Q9H3S7 1636 aa14.86□□□□□ -0.03
TOP3A-209ENST00000580095 EPRSP07814 1512 aaKnown RBP14.83□□□□□ -0.04
TOP3A-209ENST00000580095 EHBP1L1Q8N3D4 1523 aa14.83□□□□□ -0.04
TOP3A-209ENST00000580095 UGGT2Q9NYU1 1516 aa14.82□□□□□ -0.04
TOP3A-209ENST00000580095 SUPT6HQ7KZ85 1726 aaKnown RBP14.82□□□□□ -0.04
TOP3A-209ENST00000580095 IQGAP2Q13576 1575 aa14.82□□□□□ -0.04
TOP3A-209ENST00000580095 ANP32CO43423 234 aa14.82□□□□□ -0.04
TOP3A-209ENST00000580095 PBRM1Q86U86 1689 aa14.81□□□□□ -0.04
TOP3A-209ENST00000580095 MPHOSPH9Q99550 1183 aa14.79□□□□□ -0.04
TOP3A-209ENST00000580095 EIF4G3O43432 1585 aaKnown RBP14.79□□□□□ -0.04
TOP3A-209ENST00000580095 KDM6BO15054 1643 aa14.78□□□□□ -0.04
TOP3A-209ENST00000580095 ADAMTS12P58397 1594 aa14.78□□□□□ -0.04
TOP3A-209ENST00000580095 ERICH6Q7L0X2 663 aa14.78□□□□□ -0.04
TOP3A-209ENST00000580095 ZNF777Q9ULD5 760 aaPredicted RBP14.77□□□□□ -0.04
TOP3A-209ENST00000580095 ARHGEF11O15085 1522 aa14.76□□□□□ -0.05
TOP3A-209ENST00000580095 DENND4BO75064 1496 aaPredicted RBP14.76□□□□□ -0.05
TOP3A-209ENST00000580095 HSPA5P11021 654 aaKnown RBP14.76□□□□□ -0.05
TOP3A-209ENST00000580095 FKBP8Q14318 412 aa14.76□□□□□ -0.05
TOP3A-209ENST00000580095 CHMP7Q8WUX9 453 aaPredicted RBP14.75□□□□□ -0.05
TOP3A-209ENST00000580095 L3MBTL2Q969R5 705 aa14.75□□□□□ -0.05
TOP3A-209ENST00000580095 HECW1Q76N89 1606 aa14.75□□□□□ -0.05
TOP3A-209ENST00000580095 MAGI1Q96QZ7 1491 aaPredicted RBP14.72□□□□□ -0.05
TOP3A-209ENST00000580095 CNGB1Q14028 1251 aaPredicted RBP14.72□□□□□ -0.05
TOP3A-209ENST00000580095 DISP1Q96F81 1524 aa14.71□□□□□ -0.05
TOP3A-209ENST00000580095 KDM5BQ9UGL1 1544 aa14.71□□□□□ -0.05
TOP3A-209ENST00000580095 WASHC2AQ641Q2 1341 aa14.71□□□□□ -0.05
TOP3A-209ENST00000580095 TCOF1Q13428 1488 aaKnown RBP14.71□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms