RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 ABCA5Q8WWZ7 1642 aa17.02■□□□□ 0.31
SKA2-204ENST00000578519 WDR62O43379 1518 aa17.01■□□□□ 0.31
SKA2-204ENST00000578519 TARBP1Q13395 1621 aaKnown RBP16.99■□□□□ 0.31
SKA2-204ENST00000578519 ADRA2BP18089 450 aa16.97■□□□□ 0.31
SKA2-204ENST00000578519 ARAP1Q96P48 1450 aa16.97■□□□□ 0.31
SKA2-204ENST00000578519 FHAD1B1AJZ9 1412 aa16.96■□□□□ 0.31
SKA2-204ENST00000578519 ARHGAP35Q9NRY4 1499 aa16.96■□□□□ 0.31
SKA2-204ENST00000578519 GRIN2BQ13224 1484 aa16.95■□□□□ 0.3
SKA2-204ENST00000578519 EFCAB5A4FU69 1503 aa16.94■□□□□ 0.3
SKA2-204ENST00000578519 MAP3K1Q13233 1512 aa16.87■□□□□ 0.29
SKA2-204ENST00000578519 TTBK1Q5TCY1 1321 aaPredicted RBP16.87■□□□□ 0.29
SKA2-204ENST00000578519 AQRO60306 1485 aaKnown RBP eCLIP16.86■□□□□ 0.29
SKA2-204ENST00000578519 CTTNBP2Q8WZ74 1663 aa16.86■□□□□ 0.29
SKA2-204ENST00000578519 FMN1Q68DA7 1419 aa16.85■□□□□ 0.29
SKA2-204ENST00000578519 PBRM1Q86U86 1689 aa16.85■□□□□ 0.29
SKA2-204ENST00000578519 THOC2Q8NI27 1593 aaKnown RBP16.83■□□□□ 0.28
SKA2-204ENST00000578519 ADAMTS12P58397 1594 aa16.8■□□□□ 0.28
SKA2-204ENST00000578519 P3H3Q8IVL6 736 aa16.78■□□□□ 0.28
SKA2-204ENST00000578519 MAGI1Q96QZ7 1491 aaPredicted RBP16.78■□□□□ 0.28
SKA2-204ENST00000578519 CASKIN1Q8WXD9 1431 aa16.77■□□□□ 0.27
SKA2-204ENST00000578519 ZNF608Q9ULD9 1512 aaPredicted RBP16.76■□□□□ 0.27
SKA2-204ENST00000578519 FYCO1Q9BQS8 1478 aa16.76■□□□□ 0.27
SKA2-204ENST00000578519 CACNB1Q02641 598 aaPredicted RBP16.75■□□□□ 0.27
SKA2-204ENST00000578519 CCER1Q8TC90 406 aaPredicted RBP16.75■□□□□ 0.27
SKA2-204ENST00000578519 ATP1B4Q9UN42 357 aaPredicted RBP16.75■□□□□ 0.27
SKA2-204ENST00000578519 FHOD3Q2V2M9 1422 aa16.74■□□□□ 0.27
SKA2-204ENST00000578519 CHMP7Q8WUX9 453 aaPredicted RBP16.74■□□□□ 0.27
SKA2-204ENST00000578519 SNAPC4Q5SXM2 1469 aa16.73■□□□□ 0.27
SKA2-204ENST00000578519 KANK4Q5T7N3 995 aaPredicted RBP16.72■□□□□ 0.27
SKA2-204ENST00000578519 EIF4G3O43432 1585 aaKnown RBP16.72■□□□□ 0.27
SKA2-204ENST00000578519 TIAM1Q13009 1591 aa16.72■□□□□ 0.27
SKA2-204ENST00000578519 IQGAP2Q13576 1575 aa16.72■□□□□ 0.27
SKA2-204ENST00000578519 SAMD9Q5K651 1589 aa16.72■□□□□ 0.27
SKA2-204ENST00000578519 KIAA0586Q9BVV6 1533 aa16.71■□□□□ 0.27
SKA2-204ENST00000578519 SYNJ2O15056 1496 aa16.69■□□□□ 0.26
SKA2-204ENST00000578519 GRIN2AQ12879 1464 aa16.68■□□□□ 0.26
SKA2-204ENST00000578519 LRRC9Q6ZRR7 1453 aa16.68■□□□□ 0.26
SKA2-204ENST00000578519 RRBP1Q9P2E9 1410 aaKnown RBP16.67■□□□□ 0.26
SKA2-204ENST00000578519 UGGT2Q9NYU1 1516 aa16.66■□□□□ 0.26
SKA2-204ENST00000578519 HNRNPUL2Q1KMD3 747 aaKnown RBP16.66■□□□□ 0.26
SKA2-204ENST00000578519 PCF11O94913 1555 aaKnown RBP16.65■□□□□ 0.26
SKA2-204ENST00000578519 CCNB3Q8WWL7 1395 aa16.64■□□□□ 0.26
SKA2-204ENST00000578519 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.63■□□□□ 0.25
SKA2-204ENST00000578519 CFAP43Q8NDM7 1665 aa16.62■□□□□ 0.25
SKA2-204ENST00000578519 FBLN2P98095 1184 aa16.62■□□□□ 0.25
SKA2-204ENST00000578519 CCDC18Q5T9S5 1454 aa16.61■□□□□ 0.25
SKA2-204ENST00000578519 MTUS2Q5JR59 1369 aa16.61■□□□□ 0.25
SKA2-204ENST00000578519 CARMIL2Q6F5E8 1435 aa16.6■□□□□ 0.25
SKA2-204ENST00000578519 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.56■□□□□ 0.244e-8■■■■■ 44
SKA2-204ENST00000578519 CDK11AQ9UQ88 783 aaPredicted RBP16.56■□□□□ 0.24
SKA2-204ENST00000578519 HECW1Q76N89 1606 aa16.56■□□□□ 0.24
SKA2-204ENST00000578519 NUP160Q12769 1436 aa16.55■□□□□ 0.24
SKA2-204ENST00000578519 JPH4Q96JJ6 628 aa16.54■□□□□ 0.24
SKA2-204ENST00000578519 CLSPNQ9HAW4 1339 aa16.53■□□□□ 0.24
SKA2-204ENST00000578519 EHBP1L1Q8N3D4 1523 aa16.5■□□□□ 0.23
SKA2-204ENST00000578519 KIAA0556O60303 1618 aa16.5■□□□□ 0.23
SKA2-204ENST00000578519 FAM50AQ14320 339 aaKnown RBP16.49■□□□□ 0.23
SKA2-204ENST00000578519 DISP1Q96F81 1524 aa16.49■□□□□ 0.23
SKA2-204ENST00000578519 PHLDB1Q86UU1 1377 aa16.49■□□□□ 0.23
SKA2-204ENST00000578519 CEP170Q5SW79 1584 aa16.47■□□□□ 0.23
SKA2-204ENST00000578519 EPRSP07814 1512 aaKnown RBP16.45■□□□□ 0.22
SKA2-204ENST00000578519 SUPT6HQ7KZ85 1726 aaKnown RBP16.45■□□□□ 0.22
SKA2-204ENST00000578519 ITGAEP38570 1179 aa16.43■□□□□ 0.22
SKA2-204ENST00000578519 MYOM3Q5VTT5 1437 aa16.42■□□□□ 0.22
SKA2-204ENST00000578519 FGD6Q6ZV73 1430 aa16.42■□□□□ 0.22
SKA2-204ENST00000578519 NCOA2Q15596 1464 aa16.42■□□□□ 0.22
SKA2-204ENST00000578519 ACIN1Q9UKV3 1341 aaKnown RBP16.41■□□□□ 0.22
SKA2-204ENST00000578519 RAPGEF6Q8TEU7 1601 aa16.4■□□□□ 0.22
SKA2-204ENST00000578519 SETD5Q9C0A6 1442 aa16.39■□□□□ 0.21
SKA2-204ENST00000578519 MIA2Q96PC5 1412 aa16.37■□□□□ 0.21
SKA2-204ENST00000578519 PRG4Q92954 1404 aaPredicted RBP16.35■□□□□ 0.21
SKA2-204ENST00000578519 PTPRGP23470 1445 aa16.34■□□□□ 0.21
SKA2-204ENST00000578519 ARHGEF11O15085 1522 aa16.34■□□□□ 0.21
SKA2-204ENST00000578519 PLEKHD1A6NEE1 506 aa16.33■□□□□ 0.2
SKA2-204ENST00000578519 NUP153P49790 1475 aaKnown RBP16.33■□□□□ 0.2
SKA2-204ENST00000578519 DHX57Q6P158 1386 aaKnown RBP16.32■□□□□ 0.2
SKA2-204ENST00000578519 LRRIQ1Q96JM4 1722 aa16.32■□□□□ 0.2
SKA2-204ENST00000578519 CDK13Q14004 1512 aaKnown RBP16.31■□□□□ 0.2
SKA2-204ENST00000578519 TROQ12816 1431 aaPredicted RBP16.3■□□□□ 0.2
SKA2-204ENST00000578519 RAB3GAP2Q9H2M9 1393 aa16.3■□□□□ 0.2
SKA2-204ENST00000578519 TCOF1Q13428 1488 aaKnown RBP16.29■□□□□ 0.2
SKA2-204ENST00000578519 CHD1O14646 1710 aa16.28■□□□□ 0.2
SKA2-204ENST00000578519 PTPN23Q9H3S7 1636 aa16.27■□□□□ 0.2
SKA2-204ENST00000578519 MAGI3Q5TCQ9 1506 aa16.27■□□□□ 0.2
SKA2-204ENST00000578519 PLB1Q6P1J6 1458 aa16.27■□□□□ 0.19
SKA2-204ENST00000578519 ABCA8O94911 1581 aa16.26■□□□□ 0.19
SKA2-204ENST00000578519 ARID3CA6NKF2 412 aa16.26■□□□□ 0.19
SKA2-204ENST00000578519 HFM1A2PYH4 1435 aa16.23■□□□□ 0.19
SKA2-204ENST00000578519 SHROOM2Q13796 1616 aa16.23■□□□□ 0.19
SKA2-204ENST00000578519 UACAQ9BZF9 1416 aa16.22■□□□□ 0.19
SKA2-204ENST00000578519 TIMELESSQ9UNS1 1208 aa16.22■□□□□ 0.19
SKA2-204ENST00000578519 AKNAQ7Z591 1439 aa16.21■□□□□ 0.19
SKA2-204ENST00000578519 CFDP1Q9UEE9 299 aaPredicted RBP16.21■□□□□ 0.19
SKA2-204ENST00000578519 ATP10BO94823 1461 aa16.2■□□□□ 0.18
SKA2-204ENST00000578519 ZNF316A6NFI3 1004 aaPredicted RBP16.18■□□□□ 0.18
SKA2-204ENST00000578519 ADCY10Q96PN6 1610 aa16.18■□□□□ 0.18
SKA2-204ENST00000578519 DMRT2Q9Y5R5 561 aa16.17■□□□□ 0.18
SKA2-204ENST00000578519 ITSN2Q9NZM3 1697 aa16.17■□□□□ 0.18
SKA2-204ENST00000578519 ROCK1Q13464 1354 aa16.16■□□□□ 0.18
SKA2-204ENST00000578519 CLASP1Q7Z460 1538 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms