RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ZNF316A6NFI3 1004 aaPredicted RBP15□□□□□ -0.01
VPS53-220ENST00000576149 CLSPNQ9HAW4 1339 aa14.98□□□□□ -0.01
VPS53-220ENST00000576149 DNAJC5BQ9UF47 199 aa14.97□□□□□ -0.01
VPS53-220ENST00000576149 DHX57Q6P158 1386 aaKnown RBP14.96□□□□□ -0.01
VPS53-220ENST00000576149 LRRC9Q6ZRR7 1453 aa14.96□□□□□ -0.02
VPS53-220ENST00000576149 EFCAB5A4FU69 1503 aa14.95□□□□□ -0.02
VPS53-220ENST00000576149 DAXXQ9UER7 740 aaPredicted RBP14.95□□□□□ -0.02
VPS53-220ENST00000576149 PRKCSHP14314 528 aaPredicted RBP14.95□□□□□ -0.02
VPS53-220ENST00000576149 ABCA5Q8WWZ7 1642 aa14.94□□□□□ -0.02
VPS53-220ENST00000576149 PCF11O94913 1555 aaKnown RBP14.93□□□□□ -0.02
VPS53-220ENST00000576149 CTTNBP2Q8WZ74 1663 aa14.92□□□□□ -0.02
VPS53-220ENST00000576149 P3H3Q8IVL6 736 aa14.92□□□□□ -0.02
VPS53-220ENST00000576149 CFAP43Q8NDM7 1665 aa14.92□□□□□ -0.02
VPS53-220ENST00000576149 TDRD9Q8NDG6 1382 aaKnown RBP14.92□□□□□ -0.02
VPS53-220ENST00000576149 FHOD3Q2V2M9 1422 aa14.92□□□□□ -0.02
VPS53-220ENST00000576149 PELP1Q8IZL8 1130 aaKnown RBP14.92□□□□□ -0.02
VPS53-220ENST00000576149 PHF23Q9BUL5 403 aaPredicted RBP14.92□□□□□ -0.02
VPS53-220ENST00000576149 GAPVD1Q14C86 1478 aa14.91□□□□□ -0.02
VPS53-220ENST00000576149 KIF21AQ7Z4S6 1674 aa14.9□□□□□ -0.02
VPS53-220ENST00000576149 AQRO60306 1485 aaKnown RBP eCLIP14.9□□□□□ -0.027e-8■■■■■ 27.9
VPS53-220ENST00000576149 FYCO1Q9BQS8 1478 aa14.9□□□□□ -0.02
VPS53-220ENST00000576149 CASKIN1Q8WXD9 1431 aa14.89□□□□□ -0.03
VPS53-220ENST00000576149 PHLDB1Q86UU1 1377 aa14.88□□□□□ -0.03
VPS53-220ENST00000576149 TARBP1Q13395 1621 aaKnown RBP14.86□□□□□ -0.03
VPS53-220ENST00000576149 FMN1Q68DA7 1419 aa14.85□□□□□ -0.03
VPS53-220ENST00000576149 ITGAEP38570 1179 aa14.84□□□□□ -0.03
VPS53-220ENST00000576149 ATP1B4Q9UN42 357 aaPredicted RBP14.83□□□□□ -0.04
VPS53-220ENST00000576149 SAMD9Q5K651 1589 aa14.82□□□□□ -0.04
VPS53-220ENST00000576149 RAB3GAP2Q9H2M9 1393 aa14.82□□□□□ -0.04
VPS53-220ENST00000576149 SNAPC4Q5SXM2 1469 aa14.82□□□□□ -0.04
VPS53-220ENST00000576149 SCAF1Q9H7N4 1312 aaKnown RBP14.81□□□□□ -0.04
VPS53-220ENST00000576149 ACIN1Q9UKV3 1341 aaKnown RBP14.79□□□□□ -0.04
VPS53-220ENST00000576149 SETD5Q9C0A6 1442 aa14.79□□□□□ -0.04
VPS53-220ENST00000576149 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.78□□□□□ -0.04
VPS53-220ENST00000576149 MRC2Q9UBG0 1479 aa14.78□□□□□ -0.04
VPS53-220ENST00000576149 FAM50AQ14320 339 aaKnown RBP14.77□□□□□ -0.04
VPS53-220ENST00000576149 NEUROD1Q13562 356 aa14.75□□□□□ -0.05
VPS53-220ENST00000576149 PBRM1Q86U86 1689 aa14.74□□□□□ -0.05
VPS53-220ENST00000576149 GRIN2BQ13224 1484 aa14.74□□□□□ -0.05
VPS53-220ENST00000576149 CENPBP07199 599 aaPredicted RBP14.74□□□□□ -0.05
VPS53-220ENST00000576149 MAPKBP1O60336 1514 aa14.73□□□□□ -0.05
VPS53-220ENST00000576149 THOC2Q8NI27 1593 aaKnown RBP14.73□□□□□ -0.05
VPS53-220ENST00000576149 MIER1Q8N108 512 aa14.72□□□□□ -0.05
VPS53-220ENST00000576149 MTUS2Q5JR59 1369 aa14.71□□□□□ -0.05
VPS53-220ENST00000576149 FGD6Q6ZV73 1430 aa14.71□□□□□ -0.06
VPS53-220ENST00000576149 ADAMTS12P58397 1594 aa14.71□□□□□ -0.06
VPS53-220ENST00000576149 LRRIQ1Q96JM4 1722 aa14.71□□□□□ -0.06
VPS53-220ENST00000576149 IFT140Q96RY7 1462 aa14.68□□□□□ -0.06
VPS53-220ENST00000576149 IQGAP2Q13576 1575 aa14.67□□□□□ -0.06
VPS53-220ENST00000576149 WDR62O43379 1518 aa14.67□□□□□ -0.06
VPS53-220ENST00000576149 NCOA2Q15596 1464 aa14.66□□□□□ -0.06
VPS53-220ENST00000576149 EHBP1L1Q8N3D4 1523 aa14.66□□□□□ -0.06
VPS53-220ENST00000576149 CCDC18Q5T9S5 1454 aa14.64□□□□□ -0.07
VPS53-220ENST00000576149 MYOM3Q5VTT5 1437 aa14.64□□□□□ -0.07
VPS53-220ENST00000576149 ZNF608Q9ULD9 1512 aaPredicted RBP14.63□□□□□ -0.07
VPS53-220ENST00000576149 SUPT6HQ7KZ85 1726 aaKnown RBP14.63□□□□□ -0.07
VPS53-220ENST00000576149 ARHGEF11O15085 1522 aa14.62□□□□□ -0.07
VPS53-220ENST00000576149 HECW1Q76N89 1606 aa14.61□□□□□ -0.07
VPS53-220ENST00000576149 UGGT2Q9NYU1 1516 aa14.61□□□□□ -0.07
VPS53-220ENST00000576149 MAGI3Q5TCQ9 1506 aa14.61□□□□□ -0.07
VPS53-220ENST00000576149 PTPRKQ15262 1439 aa14.6□□□□□ -0.07
VPS53-220ENST00000576149 HFM1A2PYH4 1435 aa14.59□□□□□ -0.07
VPS53-220ENST00000576149 TIMELESSQ9UNS1 1208 aa14.59□□□□□ -0.07
VPS53-220ENST00000576149 EPRSP07814 1512 aaKnown RBP14.58□□□□□ -0.08
VPS53-220ENST00000576149 YTHDC1Q96MU7 727 aaKnown RBP14.58□□□□□ -0.08
VPS53-220ENST00000576149 SIN3AQ96ST3 1273 aa14.58□□□□□ -0.08
VPS53-220ENST00000576149 GTF3C3Q9Y5Q9 886 aa14.57□□□□□ -0.08
VPS53-220ENST00000576149 KIAA0586Q9BVV6 1533 aa14.57□□□□□ -0.08
VPS53-220ENST00000576149 PTPN23Q9H3S7 1636 aa14.56□□□□□ -0.08
VPS53-220ENST00000576149 NAIPQ13075 1403 aa14.55□□□□□ -0.08
VPS53-220ENST00000576149 EIF4G3O43432 1585 aaKnown RBP14.54□□□□□ -0.08
VPS53-220ENST00000576149 TCOF1Q13428 1488 aaKnown RBP14.54□□□□□ -0.08
VPS53-220ENST00000576149 ERICH6Q7L0X2 663 aa14.54□□□□□ -0.08
VPS53-220ENST00000576149 UACAQ9BZF9 1416 aa14.54□□□□□ -0.08
VPS53-220ENST00000576149 GRIN2AQ12879 1464 aa14.53□□□□□ -0.08
VPS53-220ENST00000576149 CDK13Q14004 1512 aaKnown RBP14.53□□□□□ -0.08
VPS53-220ENST00000576149 DISP1Q96F81 1524 aa14.53□□□□□ -0.08
VPS53-220ENST00000576149 ERCC6Q03468 1493 aa14.53□□□□□ -0.08
VPS53-220ENST00000576149 KIAA0556O60303 1618 aa14.52□□□□□ -0.09
VPS53-220ENST00000576149 MIA2Q96PC5 1412 aa14.5□□□□□ -0.09
VPS53-220ENST00000576149 MAGI1Q96QZ7 1491 aaPredicted RBP14.49□□□□□ -0.09
VPS53-220ENST00000576149 PPP1R15AO75807 674 aaPredicted RBP14.49□□□□□ -0.09
VPS53-220ENST00000576149 AKNAQ7Z591 1439 aa14.47□□□□□ -0.09
VPS53-220ENST00000576149 NUP153P49790 1475 aaKnown RBP14.46□□□□□ -0.1
VPS53-220ENST00000576149 PLPPR3Q6T4P5 718 aa14.45□□□□□ -0.1
VPS53-220ENST00000576149 SYNJ2O15056 1496 aa14.45□□□□□ -0.1
VPS53-220ENST00000576149 ARID3CA6NKF2 412 aa14.45□□□□□ -0.1
VPS53-220ENST00000576149 GCC2Q8IWJ2 1684 aa14.44□□□□□ -0.1
VPS53-220ENST00000576149 RAPGEF6Q8TEU7 1601 aa14.44□□□□□ -0.1
VPS53-220ENST00000576149 CHMP7Q8WUX9 453 aaPredicted RBP14.43□□□□□ -0.1
VPS53-220ENST00000576149 TONSLQ96HA7 1378 aa14.43□□□□□ -0.1
VPS53-220ENST00000576149 CEP170Q5SW79 1584 aa14.43□□□□□ -0.1
VPS53-220ENST00000576149 RRP7BPQ9NSQ0 103 aa14.43□□□□□ -0.1
VPS53-220ENST00000576149 CHIC2Q9UKJ5 165 aa14.42□□□□□ -0.1
VPS53-220ENST00000576149 CDK11AQ9UQ88 783 aaPredicted RBP14.4□□□□□ -0.1
VPS53-220ENST00000576149 NUP160Q12769 1436 aa14.39□□□□□ -0.11
VPS53-220ENST00000576149 DENND4BO75064 1496 aaPredicted RBP14.38□□□□□ -0.11
VPS53-220ENST00000576149 KDM6BO15054 1643 aa14.37□□□□□ -0.11
VPS53-220ENST00000576149 DAPK1P53355 1430 aa14.37□□□□□ -0.11
VPS53-220ENST00000576149 ROCK1Q13464 1354 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms