RNA–Protein interactions for RNA: ENST00000575112.5

RPAIN-215, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 3,817 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-215ENST00000575112 MSH5O43196 834 aa12.05□□□□□ -0.48
RPAIN-215ENST00000575112 KIF27Q86VH2 1401 aa12.05□□□□□ -0.48
RPAIN-215ENST00000575112 FOXD1Q16676 465 aa12.03□□□□□ -0.48
RPAIN-215ENST00000575112 NEFLP07196 543 aa12.03□□□□□ -0.48
RPAIN-215ENST00000575112 TDRD9Q8NDG6 1382 aaKnown RBP12.02□□□□□ -0.48
RPAIN-215ENST00000575112 RAB3GAP2Q9H2M9 1393 aa12.02□□□□□ -0.49
RPAIN-215ENST00000575112 CARMIL1Q5VZK9 1371 aa12.01□□□□□ -0.49
RPAIN-215ENST00000575112 WDR97A6NE52 1622 aa12.01□□□□□ -0.49
RPAIN-215ENST00000575112 MAPKBP1O60336 1514 aa11.99□□□□□ -0.49
RPAIN-215ENST00000575112 CLSPNQ9HAW4 1339 aa11.99□□□□□ -0.49
RPAIN-215ENST00000575112 CCNB3Q8WWL7 1395 aa11.98□□□□□ -0.49
RPAIN-215ENST00000575112 ANP32CO43423 234 aa11.97□□□□□ -0.49
RPAIN-215ENST00000575112 BICRAQ9NZM4 1560 aa11.97□□□□□ -0.49
RPAIN-215ENST00000575112 MTUS2Q5JR59 1369 aa11.96□□□□□ -0.49
RPAIN-215ENST00000575112 RRBP1Q9P2E9 1410 aaKnown RBP11.95□□□□□ -0.5
RPAIN-215ENST00000575112 PPP1R15AO75807 674 aaPredicted RBP11.95□□□□□ -0.5
RPAIN-215ENST00000575112 MYT1LQ9UL68 1186 aa11.95□□□□□ -0.5
RPAIN-215ENST00000575112 FHOD3Q2V2M9 1422 aa11.93□□□□□ -0.5
RPAIN-215ENST00000575112 FAM9BQ8IZU0 186 aa11.93□□□□□ -0.5
RPAIN-215ENST00000575112 SALL2Q9Y467 1007 aaPredicted RBP11.93□□□□□ -0.5
RPAIN-215ENST00000575112 TONSLQ96HA7 1378 aa11.92□□□□□ -0.5
RPAIN-215ENST00000575112 HNRNPUQ00839 825 aaKnown RBP eCLIP11.91□□□□□ -0.5
RPAIN-215ENST00000575112 PRXQ9BXM0 1461 aa11.91□□□□□ -0.5
RPAIN-215ENST00000575112 SENP3Q9H4L4 574 aaPredicted RBP11.91□□□□□ -0.5
RPAIN-215ENST00000575112 ARHGAP35Q9NRY4 1499 aa11.9□□□□□ -0.5
RPAIN-215ENST00000575112 RAD54L2Q9Y4B4 1467 aa11.9□□□□□ -0.5
RPAIN-215ENST00000575112 IGF1RP08069 1367 aa11.9□□□□□ -0.5
RPAIN-215ENST00000575112 KDM2AQ9Y2K7 1162 aa11.9□□□□□ -0.5
RPAIN-215ENST00000575112 PHLDB1Q86UU1 1377 aa11.88□□□□□ -0.51
RPAIN-215ENST00000575112 TOP2BQ02880 1626 aa11.87□□□□□ -0.51
RPAIN-215ENST00000575112 CADPSQ9ULU8 1353 aa11.87□□□□□ -0.51
RPAIN-215ENST00000575112 CCDC184Q52MB2 194 aa11.86□□□□□ -0.51
RPAIN-215ENST00000575112 NESP48681 1621 aa11.86□□□□□ -0.51
RPAIN-215ENST00000575112 ERICH6Q7L0X2 663 aa11.85□□□□□ -0.51
RPAIN-215ENST00000575112 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.84□□□□□ -0.512e-6■□□□□ 10.3
RPAIN-215ENST00000575112 SETD5Q9C0A6 1442 aa11.84□□□□□ -0.51
RPAIN-215ENST00000575112 CUX1P39880 1505 aa11.82□□□□□ -0.52
RPAIN-215ENST00000575112 CHMP7Q8WUX9 453 aaPredicted RBP11.82□□□□□ -0.52
RPAIN-215ENST00000575112 SLC4A1APQ9BWU0 796 aaKnown RBP11.81□□□□□ -0.52
RPAIN-215ENST00000575112 PEG3Q9GZU2 1588 aa11.81□□□□□ -0.52
RPAIN-215ENST00000575112 ERICH3Q5RHP9 1530 aa11.8□□□□□ -0.52
RPAIN-215ENST00000575112 FGD5Q6ZNL6 1462 aa11.79□□□□□ -0.52
RPAIN-215ENST00000575112 RGL3Q3MIN7 710 aa11.79□□□□□ -0.52
RPAIN-215ENST00000575112 B4GALNT3Q6L9W6 998 aa11.78□□□□□ -0.52
RPAIN-215ENST00000575112 BIVM-ERCC5R4GMW8 1640 aa11.76□□□□□ -0.53
RPAIN-215ENST00000575112 ZNF644Q9H582 1327 aaPredicted RBP11.76□□□□□ -0.53
RPAIN-215ENST00000575112 FANCD2Q9BXW9 1451 aa11.75□□□□□ -0.53
RPAIN-215ENST00000575112 MRS2Q9HD23 443 aa11.75□□□□□ -0.53
RPAIN-215ENST00000575112 TIAM1Q13009 1591 aa11.74□□□□□ -0.53
RPAIN-215ENST00000575112 CCER2I3L3R5 266 aa11.74□□□□□ -0.53
RPAIN-215ENST00000575112 LRRC9Q6ZRR7 1453 aa11.74□□□□□ -0.53
RPAIN-215ENST00000575112 NBR1Q14596 966 aa11.74□□□□□ -0.53
RPAIN-215ENST00000575112 NCAPD3P42695 1498 aa11.74□□□□□ -0.53
RPAIN-215ENST00000575112 HSPA5P11021 654 aaKnown RBP11.72□□□□□ -0.53
RPAIN-215ENST00000575112 PAK3O75914 559 aaPredicted RBP11.72□□□□□ -0.53
RPAIN-215ENST00000575112 CDK11AQ9UQ88 783 aaPredicted RBP11.72□□□□□ -0.53
RPAIN-215ENST00000575112 C11orf95C9JLR9 678 aaPredicted RBP11.71□□□□□ -0.53
RPAIN-215ENST00000575112 CFDP1Q9UEE9 299 aaPredicted RBP11.71□□□□□ -0.53
RPAIN-215ENST00000575112 WASHC2AQ641Q2 1341 aa11.7□□□□□ -0.54
RPAIN-215ENST00000575112 EIF4G2P78344 907 aaKnown RBP eCLIP11.7□□□□□ -0.54
RPAIN-215ENST00000575112 AQRO60306 1485 aaKnown RBP eCLIP11.7□□□□□ -0.543e-7■■■□□ 18.2
RPAIN-215ENST00000575112 PTPRKQ15262 1439 aa11.7□□□□□ -0.54
RPAIN-215ENST00000575112 L3MBTL2Q969R5 705 aa11.7□□□□□ -0.54
RPAIN-215ENST00000575112 CFTRP13569 1480 aa11.7□□□□□ -0.54
RPAIN-215ENST00000575112 DEKP35659 375 aaKnown RBP11.68□□□□□ -0.54
RPAIN-215ENST00000575112 PDS5BQ9NTI5 1447 aa11.68□□□□□ -0.54
RPAIN-215ENST00000575112 FHAD1B1AJZ9 1412 aa11.68□□□□□ -0.54
RPAIN-215ENST00000575112 FANCIQ9NVI1 1328 aa11.68□□□□□ -0.54
RPAIN-215ENST00000575112 MPHOSPH9Q99550 1183 aa11.67□□□□□ -0.54
RPAIN-215ENST00000575112 PCF11O94913 1555 aaKnown RBP11.67□□□□□ -0.54
RPAIN-215ENST00000575112 TSPY4P0CV99 314 aa11.62□□□□□ -0.55
RPAIN-215ENST00000575112 TSPY10P0CW01 314 aa11.62□□□□□ -0.55
RPAIN-215ENST00000575112 CCDC18Q5T9S5 1454 aa11.61□□□□□ -0.55
RPAIN-215ENST00000575112 PLEKHD1A6NEE1 506 aa11.61□□□□□ -0.55
RPAIN-215ENST00000575112 CHGAP10645 457 aaKnown RBP11.61□□□□□ -0.55
RPAIN-215ENST00000575112 PKD2Q13563 968 aa11.61□□□□□ -0.55
RPAIN-215ENST00000575112 KDM5BQ9UGL1 1544 aa11.61□□□□□ -0.55
RPAIN-215ENST00000575112 HNRNPMP52272 730 aaKnown RBP eCLIP11.61□□□□□ -0.55
RPAIN-215ENST00000575112 NPM2Q86SE8 214 aaKnown RBP11.6□□□□□ -0.55
RPAIN-215ENST00000575112 TMC1Q8TDI8 760 aa11.6□□□□□ -0.55
RPAIN-215ENST00000575112 PPP4R2Q9NY27 417 aa11.6□□□□□ -0.55
RPAIN-215ENST00000575112 DCAF11Q8TEB1 546 aa11.59□□□□□ -0.55
RPAIN-215ENST00000575112 AKNAQ7Z591 1439 aa11.59□□□□□ -0.55
RPAIN-215ENST00000575112 ANO8Q9HCE9 1232 aaPredicted RBP11.59□□□□□ -0.55
RPAIN-215ENST00000575112 CC2D2AQ9P2K1 1620 aa11.58□□□□□ -0.56
RPAIN-215ENST00000575112 POLA1P09884 1462 aaPredicted RBP11.57□□□□□ -0.56
RPAIN-215ENST00000575112 CARD11Q9BXL7 1154 aa11.57□□□□□ -0.56
RPAIN-215ENST00000575112 RTN4Q9NQC3 1192 aaKnown RBP11.57□□□□□ -0.56
RPAIN-215ENST00000575112 TIMELESSQ9UNS1 1208 aa11.57□□□□□ -0.56
RPAIN-215ENST00000575112 PRKRIP1Q9H875 184 aaPredicted RBP11.56□□□□□ -0.56
RPAIN-215ENST00000575112 FGD6Q6ZV73 1430 aa11.56□□□□□ -0.56
RPAIN-215ENST00000575112 ERCC6Q03468 1493 aa11.55□□□□□ -0.56
RPAIN-215ENST00000575112 NBPF8Q3BBV2 869 aa11.55□□□□□ -0.56
RPAIN-215ENST00000575112 DENND4BO75064 1496 aaPredicted RBP11.55□□□□□ -0.56
RPAIN-215ENST00000575112 GAPVD1Q14C86 1478 aa11.55□□□□□ -0.56
RPAIN-215ENST00000575112 FMN1Q68DA7 1419 aa11.55□□□□□ -0.56
RPAIN-215ENST00000575112 NAIPQ13075 1403 aa11.54□□□□□ -0.56
RPAIN-215ENST00000575112 CC2D1BQ5T0F9 858 aaKnown RBP11.54□□□□□ -0.56
RPAIN-215ENST00000575112 NOP58Q9Y2X3 529 aaKnown RBP11.54□□□□□ -0.56
RPAIN-215ENST00000575112 CFAP43Q8NDM7 1665 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms