RNA–Protein interactions for RNA: ENST00000573994.1

RPA1-206, Transcript of replication protein A1, humanhuman

TSL 2

Gene RPA1, Length 844 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-206ENST00000573994 DCAF8L1A6NGE4 600 aa17.57■□□□□ 0.4
RPA1-206ENST00000573994 PBRM1Q86U86 1689 aa17.56■□□□□ 0.4
RPA1-206ENST00000573994 CHMP7Q8WUX9 453 aaPredicted RBP17.54■□□□□ 0.4
RPA1-206ENST00000573994 SYNJ2O15056 1496 aa17.54■□□□□ 0.4
RPA1-206ENST00000573994 CLASP1Q7Z460 1538 aa17.48■□□□□ 0.39
RPA1-206ENST00000573994 ADAMTS12P58397 1594 aa17.45■□□□□ 0.38
RPA1-206ENST00000573994 ARAP1Q96P48 1450 aa17.44■□□□□ 0.38
RPA1-206ENST00000573994 CYB5RLQ6IPT4 315 aa17.41■□□□□ 0.38
RPA1-206ENST00000573994 GRIN2AQ12879 1464 aa17.41■□□□□ 0.38
RPA1-206ENST00000573994 ERICH3Q5RHP9 1530 aa17.39■□□□□ 0.37
RPA1-206ENST00000573994 FHAD1B1AJZ9 1412 aa17.38■□□□□ 0.37
RPA1-206ENST00000573994 CEP170Q5SW79 1584 aa17.34■□□□□ 0.37
RPA1-206ENST00000573994 NUP160Q12769 1436 aa17.33■□□□□ 0.36
RPA1-206ENST00000573994 KIF27Q86VH2 1401 aa17.28■□□□□ 0.36
RPA1-206ENST00000573994 ERCC6L2Q5T890 1561 aa17.27■□□□□ 0.35
RPA1-206ENST00000573994 IGF1RP08069 1367 aa17.23■□□□□ 0.35
RPA1-206ENST00000573994 NPM3O75607 178 aaKnown RBP17.2■□□□□ 0.34
RPA1-206ENST00000573994 SHROOM2Q13796 1616 aa17.2■□□□□ 0.34
RPA1-206ENST00000573994 RUSC2Q8N2Y8 1516 aa17.2■□□□□ 0.34
RPA1-206ENST00000573994 CUL7Q14999 1698 aa17.19■□□□□ 0.34
RPA1-206ENST00000573994 PRG4Q92954 1404 aaPredicted RBP17.15■□□□□ 0.34
RPA1-206ENST00000573994 TRHP20396 242 aaPredicted RBP17.15■□□□□ 0.34
RPA1-206ENST00000573994 CARMIL1Q5VZK9 1371 aa17.14■□□□□ 0.33
RPA1-206ENST00000573994 JPH4Q96JJ6 628 aa17.12■□□□□ 0.33
RPA1-206ENST00000573994 CACNB1Q02641 598 aaPredicted RBP17.1■□□□□ 0.33
RPA1-206ENST00000573994 KIAA0586Q9BVV6 1533 aa17.09■□□□□ 0.33
RPA1-206ENST00000573994 RNF39Q9H2S5 420 aa17.05■□□□□ 0.32
RPA1-206ENST00000573994 RAPGEF2Q9Y4G8 1499 aa17■□□□□ 0.31
RPA1-206ENST00000573994 IQGAP2Q13576 1575 aa16.98■□□□□ 0.31
RPA1-206ENST00000573994 KCNA4P22459 653 aa16.97■□□□□ 0.31
RPA1-206ENST00000573994 TTBK1Q5TCY1 1321 aaPredicted RBP16.95■□□□□ 0.3
RPA1-206ENST00000573994 ADCY10Q96PN6 1610 aa16.93■□□□□ 0.3
RPA1-206ENST00000573994 C1QBPQ07021 282 aaKnown RBP16.92■□□□□ 0.3
RPA1-206ENST00000573994 CARMIL2Q6F5E8 1435 aa16.91■□□□□ 0.3
RPA1-206ENST00000573994 PTPRGP23470 1445 aa16.9■□□□□ 0.3
RPA1-206ENST00000573994 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.9■□□□□ 0.3
RPA1-206ENST00000573994 TNIKQ9UKE5 1360 aa16.89■□□□□ 0.3
RPA1-206ENST00000573994 PRXQ9BXM0 1461 aa16.89■□□□□ 0.29
RPA1-206ENST00000573994 DISP1Q96F81 1524 aa16.89■□□□□ 0.29
RPA1-206ENST00000573994 UGGT2Q9NYU1 1516 aa16.87■□□□□ 0.29
RPA1-206ENST00000573994 NPM1P06748 294 aaKnown RBP eCLIP16.85■□□□□ 0.29
RPA1-206ENST00000573994 MAPKBP1O60336 1514 aa16.84■□□□□ 0.29
RPA1-206ENST00000573994 KIAA0556O60303 1618 aa16.84■□□□□ 0.29
RPA1-206ENST00000573994 CTTNBP2Q8WZ74 1663 aa16.82■□□□□ 0.28
RPA1-206ENST00000573994 ABCC10Q5T3U5 1492 aa16.8■□□□□ 0.28
RPA1-206ENST00000573994 CSRNP3Q8WYN3 585 aa16.79■□□□□ 0.28
RPA1-206ENST00000573994 DIP2BQ9P265 1576 aa16.79■□□□□ 0.28
RPA1-206ENST00000573994 ABCC2Q92887 1545 aa16.79■□□□□ 0.28
RPA1-206ENST00000573994 KIF13AQ9H1H9 1805 aa16.79■□□□□ 0.28
RPA1-206ENST00000573994 UACAQ9BZF9 1416 aa16.79■□□□□ 0.28
RPA1-206ENST00000573994 FAM69CQ0P6D2 419 aa16.78■□□□□ 0.28
RPA1-206ENST00000573994 FAM9AQ8IZU1 332 aaPredicted RBP16.78■□□□□ 0.28
RPA1-206ENST00000573994 EEA1Q15075 1411 aa16.77■□□□□ 0.27
RPA1-206ENST00000573994 UHRF1BP1LA0JNW5 1464 aa16.76■□□□□ 0.27
RPA1-206ENST00000573994 GOLGA3Q08378 1498 aa16.75■□□□□ 0.27
RPA1-206ENST00000573994 ASXL2Q76L83 1435 aa16.72■□□□□ 0.27
RPA1-206ENST00000573994 PLB1Q6P1J6 1458 aa16.72■□□□□ 0.27
RPA1-206ENST00000573994 KDM5BQ9UGL1 1544 aa16.69■□□□□ 0.26
RPA1-206ENST00000573994 ZCCHC11Q5TAX3 1644 aaKnown RBP16.67■□□□□ 0.26
RPA1-206ENST00000573994 P3H3Q8IVL6 736 aa16.67■□□□□ 0.26
RPA1-206ENST00000573994 RANGAP1P46060 587 aaPredicted RBP16.66■□□□□ 0.26
RPA1-206ENST00000573994 ABCA8O94911 1581 aa16.65■□□□□ 0.26
RPA1-206ENST00000573994 EHMT2Q96KQ7 1210 aa16.64■□□□□ 0.25
RPA1-206ENST00000573994 SAMD9Q5K651 1589 aa16.64■□□□□ 0.25
RPA1-206ENST00000573994 KIF21BO75037 1637 aa16.63■□□□□ 0.25
RPA1-206ENST00000573994 EPRSP07814 1512 aaKnown RBP16.61■□□□□ 0.25
RPA1-206ENST00000573994 TSPOAP1O95153 1857 aa16.61■□□□□ 0.25
RPA1-206ENST00000573994 GLI2P10070 1586 aa16.6■□□□□ 0.25
RPA1-206ENST00000573994 ARID3CA6NKF2 412 aa16.6■□□□□ 0.25
RPA1-206ENST00000573994 WDR7Q9Y4E6 1490 aa16.6■□□□□ 0.25
RPA1-206ENST00000573994 FHOD3Q2V2M9 1422 aa16.59■□□□□ 0.25
RPA1-206ENST00000573994 KDM6BO15054 1643 aa16.57■□□□□ 0.24
RPA1-206ENST00000573994 PPRC1Q5VV67 1664 aaKnown RBP16.55■□□□□ 0.24
RPA1-206ENST00000573994 MAP3K4Q9Y6R4 1608 aa16.52■□□□□ 0.24
RPA1-206ENST00000573994 RAPGEF6Q8TEU7 1601 aa16.52■□□□□ 0.23
RPA1-206ENST00000573994 EFCAB5A4FU69 1503 aa16.51■□□□□ 0.23
RPA1-206ENST00000573994 ATP10BO94823 1461 aa16.51■□□□□ 0.23
RPA1-206ENST00000573994 UBTFP17480 764 aaKnown RBP16.51■□□□□ 0.23
RPA1-206ENST00000573994 KCNH8Q96L42 1107 aa16.51■□□□□ 0.23
RPA1-206ENST00000573994 NUP153P49790 1475 aaKnown RBP16.48■□□□□ 0.23
RPA1-206ENST00000573994 TEX14Q8IWB6 1497 aa16.48■□□□□ 0.23
RPA1-206ENST00000573994 CD109Q6YHK3 1445 aa16.45■□□□□ 0.22
RPA1-206ENST00000573994 COL17A1Q9UMD9 1497 aaPredicted RBP16.44■□□□□ 0.22
RPA1-206ENST00000573994 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.44■□□□□ 0.22
RPA1-206ENST00000573994 HNRNPUL2Q1KMD3 747 aaKnown RBP16.44■□□□□ 0.22
RPA1-206ENST00000573994 U3KPZ7 1027 aaPredicted RBP16.43■□□□□ 0.22
RPA1-206ENST00000573994 CFAP43Q8NDM7 1665 aa16.42■□□□□ 0.22
RPA1-206ENST00000573994 ARHGAP35Q9NRY4 1499 aa16.42■□□□□ 0.22
RPA1-206ENST00000573994 MAGI3Q5TCQ9 1506 aa16.41■□□□□ 0.22
RPA1-206ENST00000573994 CDK13Q14004 1512 aaKnown RBP16.38■□□□□ 0.21
RPA1-206ENST00000573994 ABCA9Q8IUA7 1624 aa16.36■□□□□ 0.21
RPA1-206ENST00000573994 FMN1Q68DA7 1419 aa16.35■□□□□ 0.21
RPA1-206ENST00000573994 APLP2Q06481 763 aa16.33■□□□□ 0.2
RPA1-206ENST00000573994 ATP1B4Q9UN42 357 aaPredicted RBP16.33■□□□□ 0.2
RPA1-206ENST00000573994 HECW1Q76N89 1606 aa16.32■□□□□ 0.2
RPA1-206ENST00000573994 PLEKHD1A6NEE1 506 aa16.31■□□□□ 0.2
RPA1-206ENST00000573994 SLC4A2P04920 1241 aa16.3■□□□□ 0.2
RPA1-206ENST00000573994 KDM4FA0A1W2PPD8 638 aa16.29■□□□□ 0.2
RPA1-206ENST00000573994 TTC37Q6PGP7 1564 aa16.29■□□□□ 0.2
RPA1-206ENST00000573994 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms