RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 MAPKBP1O60336 1514 aa13.53□□□□□ -0.24
CHD3-213ENST00000571249 WDR97A6NE52 1622 aa13.51□□□□□ -0.25
CHD3-213ENST00000571249 COL17A1Q9UMD9 1497 aaPredicted RBP13.51□□□□□ -0.25
CHD3-213ENST00000571249 PRG4Q92954 1404 aaPredicted RBP13.49□□□□□ -0.25
CHD3-213ENST00000571249 GRIN2AQ12879 1464 aa13.48□□□□□ -0.25
CHD3-213ENST00000571249 SHROOM2Q13796 1616 aa13.48□□□□□ -0.25
CHD3-213ENST00000571249 NUP160Q12769 1436 aa13.47□□□□□ -0.25
CHD3-213ENST00000571249 PBRM1Q86U86 1689 aa13.46□□□□□ -0.26
CHD3-213ENST00000571249 JPH4Q96JJ6 628 aa13.43□□□□□ -0.26
CHD3-213ENST00000571249 CERKQ8TCT0 537 aa13.42□□□□□ -0.26
CHD3-213ENST00000571249 ADCY10Q96PN6 1610 aa13.42□□□□□ -0.26
CHD3-213ENST00000571249 PPRC1Q5VV67 1664 aaKnown RBP13.38□□□□□ -0.27
CHD3-213ENST00000571249 SPATA31D1Q6ZQQ2 1576 aa13.37□□□□□ -0.27
CHD3-213ENST00000571249 CUX1P39880 1505 aa13.37□□□□□ -0.27
CHD3-213ENST00000571249 TOP2BQ02880 1626 aa13.35□□□□□ -0.27
CHD3-213ENST00000571249 ABCA5Q8WWZ7 1642 aa13.32□□□□□ -0.28
CHD3-213ENST00000571249 ADAMTS12P58397 1594 aa13.29□□□□□ -0.28
CHD3-213ENST00000571249 HSPA2P54652 639 aa13.29□□□□□ -0.28
CHD3-213ENST00000571249 ABCA10Q8WWZ4 1543 aa13.28□□□□□ -0.28
CHD3-213ENST00000571249 FHAD1B1AJZ9 1412 aa13.26□□□□□ -0.29
CHD3-213ENST00000571249 PTPRMP28827 1452 aa13.26□□□□□ -0.29
CHD3-213ENST00000571249 TTBK1Q5TCY1 1321 aaPredicted RBP13.26□□□□□ -0.29
CHD3-213ENST00000571249 ASXL2Q76L83 1435 aa13.25□□□□□ -0.29
CHD3-213ENST00000571249 GLI2P10070 1586 aa13.24□□□□□ -0.29
CHD3-213ENST00000571249 PCF11O94913 1555 aaKnown RBP13.23□□□□□ -0.29
CHD3-213ENST00000571249 PLB1Q6P1J6 1458 aa13.19□□□□□ -0.3
CHD3-213ENST00000571249 KIF21BO75037 1637 aa13.17□□□□□ -0.3
CHD3-213ENST00000571249 TEX14Q8IWB6 1497 aa13.16□□□□□ -0.3
CHD3-213ENST00000571249 EPRSP07814 1512 aaKnown RBP13.15□□□□□ -0.3
CHD3-213ENST00000571249 ABCC2Q92887 1545 aa13.14□□□□□ -0.31
CHD3-213ENST00000571249 PTPRGP23470 1445 aa13.13□□□□□ -0.31
CHD3-213ENST00000571249 RUSC2Q8N2Y8 1516 aa13.13□□□□□ -0.31
CHD3-213ENST00000571249 MAP3K4Q9Y6R4 1608 aa13.13□□□□□ -0.31
CHD3-213ENST00000571249 PLPPR3Q6T4P5 718 aa13.12□□□□□ -0.31
CHD3-213ENST00000571249 ADAMTSL3P82987 1691 aa13.11□□□□□ -0.31
CHD3-213ENST00000571249 CUL7Q14999 1698 aa13.06□□□□□ -0.32
CHD3-213ENST00000571249 ERICH3Q5RHP9 1530 aa13.05□□□□□ -0.32
CHD3-213ENST00000571249 WRNQ14191 1432 aaPredicted RBP eCLIP13.05□□□□□ -0.32
CHD3-213ENST00000571249 MADDQ8WXG6 1647 aa13.02□□□□□ -0.32
CHD3-213ENST00000571249 ARID4BQ4LE39 1312 aaPredicted RBP13.02□□□□□ -0.33
CHD3-213ENST00000571249 KIAA0586Q9BVV6 1533 aa13□□□□□ -0.33
CHD3-213ENST00000571249 TNIKQ9UKE5 1360 aa12.99□□□□□ -0.33
CHD3-213ENST00000571249 CD109Q6YHK3 1445 aa12.98□□□□□ -0.33
CHD3-213ENST00000571249 KCNH8Q96L42 1107 aa12.98□□□□□ -0.33
CHD3-213ENST00000571249 UHRF1BP1LA0JNW5 1464 aa12.97□□□□□ -0.33
CHD3-213ENST00000571249 UACAQ9BZF9 1416 aa12.97□□□□□ -0.33
CHD3-213ENST00000571249 BCORL1Q5H9F3 1711 aa12.96□□□□□ -0.34
CHD3-213ENST00000571249 MAGI3Q5TCQ9 1506 aa12.95□□□□□ -0.34
CHD3-213ENST00000571249 KDM5BQ9UGL1 1544 aa12.95□□□□□ -0.34
CHD3-213ENST00000571249 RAPGEF3O95398 923 aa12.95□□□□□ -0.34
CHD3-213ENST00000571249 RIMS1Q86UR5 1692 aaKnown RBP12.94□□□□□ -0.34
CHD3-213ENST00000571249 ZCCHC11Q5TAX3 1644 aaKnown RBP12.91□□□□□ -0.34
CHD3-213ENST00000571249 WDR7Q9Y4E6 1490 aa12.91□□□□□ -0.34
CHD3-213ENST00000571249 YEATS2Q9ULM3 1422 aa12.9□□□□□ -0.34
CHD3-213ENST00000571249 DMRT2Q9Y5R5 561 aa12.9□□□□□ -0.34
CHD3-213ENST00000571249 ARAP3Q8WWN8 1544 aa12.89□□□□□ -0.35
CHD3-213ENST00000571249 CARMIL2Q6F5E8 1435 aa12.88□□□□□ -0.35
CHD3-213ENST00000571249 STRCQ7RTU9 1775 aa12.86□□□□□ -0.35
CHD3-213ENST00000571249 UBAP1LF5GYI3 381 aa12.86□□□□□ -0.35
CHD3-213ENST00000571249 LTBP4Q8N2S1 1624 aa12.86□□□□□ -0.35
CHD3-213ENST00000571249 MED1Q15648 1581 aaPredicted RBP12.86□□□□□ -0.35
CHD3-213ENST00000571249 CFAP43Q8NDM7 1665 aa12.83□□□□□ -0.35
CHD3-213ENST00000571249 MLECQ14165 292 aa12.83□□□□□ -0.36
CHD3-213ENST00000571249 HSPA1LP34931 641 aa12.82□□□□□ -0.36
CHD3-213ENST00000571249 CEBPAP49715 358 aaPredicted RBP12.82□□□□□ -0.36
CHD3-213ENST00000571249 DISP1Q96F81 1524 aa12.79□□□□□ -0.36
CHD3-213ENST00000571249 IGF1RP08069 1367 aa12.79□□□□□ -0.36
CHD3-213ENST00000571249 BIVM-ERCC5R4GMW8 1640 aa12.78□□□□□ -0.36
CHD3-213ENST00000571249 PTPRTO14522 1441 aa12.78□□□□□ -0.36
CHD3-213ENST00000571249 IQSEC2Q5JU85 1478 aa12.78□□□□□ -0.36
CHD3-213ENST00000571249 SRCAPQ6ZRS2 3230 aa12.74□□□□□ -0.37
CHD3-213ENST00000571249 FRMPD1Q5SYB0 1578 aa12.73□□□□□ -0.37
CHD3-213ENST00000571249 SCAF1Q9H7N4 1312 aaKnown RBP12.72□□□□□ -0.37
CHD3-213ENST00000571249 SIGLEC1Q9BZZ2 1709 aa12.72□□□□□ -0.37
CHD3-213ENST00000571249 ZNF335Q9H4Z2 1342 aaPredicted RBP12.71□□□□□ -0.37
CHD3-213ENST00000571249 PIP4K2BP78356 416 aa12.71□□□□□ -0.37
CHD3-213ENST00000571249 PREX1Q8TCU6 1659 aa12.7□□□□□ -0.38
CHD3-213ENST00000571249 PHLDB1Q86UU1 1377 aa12.7□□□□□ -0.38
CHD3-213ENST00000571249 ARID3CA6NKF2 412 aa12.7□□□□□ -0.38
CHD3-213ENST00000571249 RGS17Q9UGC6 210 aaPredicted RBP12.7□□□□□ -0.38
CHD3-213ENST00000571249 POGZQ7Z3K3 1410 aa12.7□□□□□ -0.38
CHD3-213ENST00000571249 IQGAP2Q13576 1575 aa12.69□□□□□ -0.38
CHD3-213ENST00000571249 TTC37Q6PGP7 1564 aa12.68□□□□□ -0.38
CHD3-213ENST00000571249 UHRF1BP1Q6BDS2 1440 aa12.67□□□□□ -0.38
CHD3-213ENST00000571249 ARHGEF40Q8TER5 1519 aa12.67□□□□□ -0.38
CHD3-213ENST00000571249 FANCAO15360 1455 aa12.65□□□□□ -0.38
CHD3-213ENST00000571249 FER1L4A9Z1Z3 1794 aa12.65□□□□□ -0.38
CHD3-213ENST00000571249 CARMIL1Q5VZK9 1371 aa12.65□□□□□ -0.38
CHD3-213ENST00000571249 SENP3Q9H4L4 574 aaPredicted RBP12.63□□□□□ -0.39
CHD3-213ENST00000571249 NEO1Q92859 1461 aa12.63□□□□□ -0.39
CHD3-213ENST00000571249 AKNAQ7Z591 1439 aa12.62□□□□□ -0.39
CHD3-213ENST00000571249 NCKAP5LQ9HCH0 1330 aa12.61□□□□□ -0.39
CHD3-213ENST00000571249 KIAA0556O60303 1618 aa12.59□□□□□ -0.39
CHD3-213ENST00000571249 NCOA1Q15788 1441 aa12.59□□□□□ -0.39
CHD3-213ENST00000571249 DENND4BO75064 1496 aaPredicted RBP12.59□□□□□ -0.39
CHD3-213ENST00000571249 UGGT2Q9NYU1 1516 aa12.58□□□□□ -0.4
CHD3-213ENST00000571249 ARHGEF12Q9NZN5 1544 aa12.58□□□□□ -0.4
CHD3-213ENST00000571249 ABCA9Q8IUA7 1624 aa12.58□□□□□ -0.4
CHD3-213ENST00000571249 SETD1BQ9UPS6 1966 aaKnown RBP12.58□□□□□ -0.4
CHD3-213ENST00000571249 ABCA8O94911 1581 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms