RNA–Protein interactions for RNA: ENST00000569575.5

RAB40C-212, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-212ENST00000569575 CTTNBP2Q8WZ74 1663 aa38.16■■■■□ 3.7
RAB40C-212ENST00000569575 UBTFP17480 764 aaKnown RBP38.14■■■■□ 3.7
RAB40C-212ENST00000569575 IQGAP2Q13576 1575 aa38.1■■■■□ 3.69
RAB40C-212ENST00000569575 TNIKQ9UKE5 1360 aa38.05■■■■□ 3.68
RAB40C-212ENST00000569575 JPH4Q96JJ6 628 aa38.02■■■■□ 3.68
RAB40C-212ENST00000569575 SHROOM2Q13796 1616 aa38.01■■■■□ 3.67
RAB40C-212ENST00000569575 UGGT2Q9NYU1 1516 aa37.96■■■■□ 3.67
RAB40C-212ENST00000569575 EHMT2Q96KQ7 1210 aa37.91■■■■□ 3.66
RAB40C-212ENST00000569575 LOC105371045A0A1W2PR82 267 aa37.89■■■■□ 3.66
RAB40C-212ENST00000569575 CARMIL2Q6F5E8 1435 aa37.87■■■■□ 3.65
RAB40C-212ENST00000569575 PRG4Q92954 1404 aaPredicted RBP37.83■■■■□ 3.65
RAB40C-212ENST00000569575 EFCAB5A4FU69 1503 aa37.78■■■■□ 3.64
RAB40C-212ENST00000569575 DNAJC5Q9H3Z4 198 aa37.78■■■■□ 3.64
RAB40C-212ENST00000569575 DISP1Q96F81 1524 aa37.72■■■■□ 3.63
RAB40C-212ENST00000569575 SAMD9Q5K651 1589 aa37.72■■■■□ 3.63
RAB40C-212ENST00000569575 ARHGEF11O15085 1522 aa37.7■■■■□ 3.63
RAB40C-212ENST00000569575 KIAA0556O60303 1618 aa37.69■■■■□ 3.62
RAB40C-212ENST00000569575 CLIP1P30622 1438 aa37.64■■■■□ 3.62
RAB40C-212ENST00000569575 CEP162Q5TB80 1403 aa37.62■■■■□ 3.61
RAB40C-212ENST00000569575 ARHGAP35Q9NRY4 1499 aa37.58■■■■□ 3.61
RAB40C-212ENST00000569575 RIMBP3CA6NJZ7 1639 aa37.58■■■■□ 3.61
RAB40C-212ENST00000569575 RIMBP3BA6NNM3 1639 aa37.58■■■■□ 3.61
RAB40C-212ENST00000569575 RIMBP3Q9UFD9 1639 aa37.58■■■■□ 3.61
RAB40C-212ENST00000569575 ERCC6L2Q5T890 1561 aa37.57■■■■□ 3.6
RAB40C-212ENST00000569575 RANGAP1P46060 587 aaPredicted RBP37.56■■■■□ 3.6
RAB40C-212ENST00000569575 PTPRGP23470 1445 aa37.53■■■■□ 3.6
RAB40C-212ENST00000569575 FMN1Q68DA7 1419 aa37.44■■■■□ 3.58
RAB40C-212ENST00000569575 P3H3Q8IVL6 736 aa37.44■■■■□ 3.58
RAB40C-212ENST00000569575 FHOD3Q2V2M9 1422 aa37.42■■■■□ 3.58
RAB40C-212ENST00000569575 ARAP1Q96P48 1450 aa37.41■■■■□ 3.58
RAB40C-212ENST00000569575 UACAQ9BZF9 1416 aa37.31■■■■□ 3.56
RAB40C-212ENST00000569575 UHRF1BP1LA0JNW5 1464 aa37.29■■■■□ 3.56
RAB40C-212ENST00000569575 CYB5RLQ6IPT4 315 aa37.29■■■■□ 3.56
RAB40C-212ENST00000569575 ABCA8O94911 1581 aa37.25■■■■□ 3.55
RAB40C-212ENST00000569575 TTBK1Q5TCY1 1321 aaPredicted RBP37.22■■■■□ 3.55
RAB40C-212ENST00000569575 ABCC2Q92887 1545 aa37.21■■■■□ 3.55
RAB40C-212ENST00000569575 RAPGEF6Q8TEU7 1601 aa37.2■■■■□ 3.55
RAB40C-212ENST00000569575 PLB1Q6P1J6 1458 aa37.19■■■■□ 3.54
RAB40C-212ENST00000569575 VPS8Q8N3P4 1428 aa37.19■■■■□ 3.54
RAB40C-212ENST00000569575 CASKIN1Q8WXD9 1431 aa37.18■■■■□ 3.54
RAB40C-212ENST00000569575 FYCO1Q9BQS8 1478 aa37.13■■■■□ 3.53
RAB40C-212ENST00000569575 HECW1Q76N89 1606 aa37.1■■■■□ 3.53
RAB40C-212ENST00000569575 ADCY10Q96PN6 1610 aa37.1■■■■□ 3.53
RAB40C-212ENST00000569575 NPM1P06748 294 aaKnown RBP eCLIP37.08■■■■□ 3.53
RAB40C-212ENST00000569575 KDM5BQ9UGL1 1544 aa37.06■■■■□ 3.52
RAB40C-212ENST00000569575 NUP153P49790 1475 aaKnown RBP37.04■■■■□ 3.52
RAB40C-212ENST00000569575 PCF11O94913 1555 aaKnown RBP37.03■■■■□ 3.52
RAB40C-212ENST00000569575 CCDC18Q5T9S5 1454 aa37■■■■□ 3.51
RAB40C-212ENST00000569575 EPRSP07814 1512 aaKnown RBP36.95■■■■□ 3.51
RAB40C-212ENST00000569575 ATP1B4Q9UN42 357 aaPredicted RBP36.95■■■■□ 3.51
RAB40C-212ENST00000569575 ATP10BO94823 1461 aa36.94■■■■□ 3.5
RAB40C-212ENST00000569575 CDK11AQ9UQ88 783 aaPredicted RBP36.91■■■■□ 3.5
RAB40C-212ENST00000569575 MAP3K1Q13233 1512 aa36.9■■■■□ 3.5
RAB40C-212ENST00000569575 ZCCHC11Q5TAX3 1644 aaKnown RBP36.89■■■■□ 3.5
RAB40C-212ENST00000569575 APLP2Q06481 763 aa36.86■■■■□ 3.49
RAB40C-212ENST00000569575 MAPKBP1O60336 1514 aa36.85■■■■□ 3.49
RAB40C-212ENST00000569575 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.83■■■■□ 3.49
RAB40C-212ENST00000569575 HNRNPUL2Q1KMD3 747 aaKnown RBP36.83■■■■□ 3.49
RAB40C-212ENST00000569575 PLEKHD1A6NEE1 506 aa36.8■■■■□ 3.48
RAB40C-212ENST00000569575 LRRIQ1Q96JM4 1722 aa36.79■■■■□ 3.48
RAB40C-212ENST00000569575 CDK13Q14004 1512 aaKnown RBP36.76■■■■□ 3.48
RAB40C-212ENST00000569575 ASXL2Q76L83 1435 aa36.73■■■■□ 3.47
RAB40C-212ENST00000569575 TIAM1Q13009 1591 aa36.73■■■■□ 3.47
RAB40C-212ENST00000569575 ARID3CA6NKF2 412 aa36.72■■■■□ 3.47
RAB40C-212ENST00000569575 CFAP43Q8NDM7 1665 aa36.72■■■■□ 3.47
RAB40C-212ENST00000569575 WDR7Q9Y4E6 1490 aa36.71■■■■□ 3.47
RAB40C-212ENST00000569575 TROQ12816 1431 aaPredicted RBP36.65■■■■□ 3.46
RAB40C-212ENST00000569575 MTUS2Q5JR59 1369 aa36.62■■■■□ 3.45
RAB40C-212ENST00000569575 EHBP1L1Q8N3D4 1523 aa36.59■■■■□ 3.45
RAB40C-212ENST00000569575 LRRC9Q6ZRR7 1453 aa36.58■■■■□ 3.45
RAB40C-212ENST00000569575 ABCC10Q5T3U5 1492 aa36.56■■■■□ 3.44
RAB40C-212ENST00000569575 GLI2P10070 1586 aa36.53■■■■□ 3.44
RAB40C-212ENST00000569575 MAGI3Q5TCQ9 1506 aa36.5■■■■□ 3.43
RAB40C-212ENST00000569575 KIF14Q15058 1648 aa36.49■■■■□ 3.43
RAB40C-212ENST00000569575 KCNH8Q96L42 1107 aa36.48■■■■□ 3.43
RAB40C-212ENST00000569575 DIP2BQ9P265 1576 aa36.45■■■■□ 3.43
RAB40C-212ENST00000569575 KANK4Q5T7N3 995 aaPredicted RBP36.45■■■■□ 3.43
RAB40C-212ENST00000569575 SUPT6HQ7KZ85 1726 aaKnown RBP36.42■■■■□ 3.42
RAB40C-212ENST00000569575 ABCA9Q8IUA7 1624 aa36.41■■■■□ 3.42
RAB40C-212ENST00000569575 FAM69CQ0P6D2 419 aa36.4■■■■□ 3.42
RAB40C-212ENST00000569575 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.37■■■■□ 3.412e-6■■■□□ 16.1
RAB40C-212ENST00000569575 KIF13AQ9H1H9 1805 aa36.34■■■■□ 3.41
RAB40C-212ENST00000569575 NCOA2Q15596 1464 aa36.32■■■■□ 3.41
RAB40C-212ENST00000569575 MAP3K4Q9Y6R4 1608 aa36.3■■■■□ 3.4
RAB40C-212ENST00000569575 ARAP3Q8WWN8 1544 aa36.29■■■■□ 3.4
RAB40C-212ENST00000569575 CD109Q6YHK3 1445 aa36.29■■■■□ 3.4
RAB40C-212ENST00000569575 CCNB3Q8WWL7 1395 aa36.27■■■■□ 3.4
RAB40C-212ENST00000569575 TRHP20396 242 aaPredicted RBP36.27■■■■□ 3.4
RAB40C-212ENST00000569575 PLCH2O75038 1416 aa36.25■■■■□ 3.39
RAB40C-212ENST00000569575 TTC37Q6PGP7 1564 aa36.25■■■■□ 3.39
RAB40C-212ENST00000569575 MYO5CQ9NQX4 1742 aa36.23■■■■□ 3.39
RAB40C-212ENST00000569575 ITSN2Q9NZM3 1697 aa36.21■■■■□ 3.39
RAB40C-212ENST00000569575 GPATCH8Q9UKJ3 1502 aaKnown RBP36.2■■■■□ 3.39
RAB40C-212ENST00000569575 TEX14Q8IWB6 1497 aa36.18■■■■□ 3.38
RAB40C-212ENST00000569575 PHLDB1Q86UU1 1377 aa36.18■■■■□ 3.38
RAB40C-212ENST00000569575 PREX2Q70Z35 1606 aa36.16■■■■□ 3.38
RAB40C-212ENST00000569575 CDC42BPAQ5VT25 1732 aa36.16■■■■□ 3.38
RAB40C-212ENST00000569575 MYOM3Q5VTT5 1437 aa36.16■■■■□ 3.38
RAB40C-212ENST00000569575 MIA2Q96PC5 1412 aa36.16■■■■□ 3.38
RAB40C-212ENST00000569575 EFCAB2Q5VUJ9 269 aa36.15■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms