RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PRXQ9BXM0 1461 aa32.71■■■□□ 2.83
CLN3-225ENST00000566824 EEA1Q15075 1411 aa32.7■■■□□ 2.83
CLN3-225ENST00000566824 SHROOM2Q13796 1616 aa32.63■■■□□ 2.81
CLN3-225ENST00000566824 ERCC6L2Q5T890 1561 aa32.61■■■□□ 2.81
CLN3-225ENST00000566824 KIAA0586Q9BVV6 1533 aa32.59■■■□□ 2.81
CLN3-225ENST00000566824 JPH4Q96JJ6 628 aa32.52■■■□□ 2.8
CLN3-225ENST00000566824 ARAP1Q96P48 1450 aa32.51■■■□□ 2.79
CLN3-225ENST00000566824 PRG4Q92954 1404 aaPredicted RBP32.48■■■□□ 2.79
CLN3-225ENST00000566824 IQGAP2Q13576 1575 aa32.48■■■□□ 2.79
CLN3-225ENST00000566824 CTTNBP2Q8WZ74 1663 aa32.47■■■□□ 2.79
CLN3-225ENST00000566824 KIF21BO75037 1637 aa32.45■■■□□ 2.79
CLN3-225ENST00000566824 CYB5RLQ6IPT4 315 aa32.4■■■□□ 2.78
CLN3-225ENST00000566824 EHMT2Q96KQ7 1210 aa32.38■■■□□ 2.77
CLN3-225ENST00000566824 UGGT2Q9NYU1 1516 aa32.3■■■□□ 2.76
CLN3-225ENST00000566824 DISP1Q96F81 1524 aa32.28■■■□□ 2.76
CLN3-225ENST00000566824 GOLGA3Q08378 1498 aa32.24■■■□□ 2.75
CLN3-225ENST00000566824 KIAA0556O60303 1618 aa32.19■■■□□ 2.74
CLN3-225ENST00000566824 CARMIL2Q6F5E8 1435 aa32.17■■■□□ 2.74
CLN3-225ENST00000566824 UBTFP17480 764 aaKnown RBP32.14■■■□□ 2.74
CLN3-225ENST00000566824 TTBK1Q5TCY1 1321 aaPredicted RBP32.12■■■□□ 2.73
CLN3-225ENST00000566824 TNIKQ9UKE5 1360 aa32.1■■■□□ 2.73
CLN3-225ENST00000566824 RANGAP1P46060 587 aaPredicted RBP32.1■■■□□ 2.73
CLN3-225ENST00000566824 PTPRGP23470 1445 aa32.08■■■□□ 2.73
CLN3-225ENST00000566824 SAMD9Q5K651 1589 aa32.06■■■□□ 2.72
CLN3-225ENST00000566824 P3H3Q8IVL6 736 aa32.04■■■□□ 2.72
CLN3-225ENST00000566824 ADCY10Q96PN6 1610 aa32■■■□□ 2.71
CLN3-225ENST00000566824 LOC105371045A0A1W2PR82 267 aa31.9■■■□□ 2.7
CLN3-225ENST00000566824 FHOD3Q2V2M9 1422 aa31.9■■■□□ 2.7
CLN3-225ENST00000566824 EFCAB5A4FU69 1503 aa31.87■■■□□ 2.69
CLN3-225ENST00000566824 UACAQ9BZF9 1416 aa31.87■■■□□ 2.69
CLN3-225ENST00000566824 PLB1Q6P1J6 1458 aa31.87■■■□□ 2.69
CLN3-225ENST00000566824 ARHGAP35Q9NRY4 1499 aa31.85■■■□□ 2.69
CLN3-225ENST00000566824 ABCA8O94911 1581 aa31.83■■■□□ 2.69
CLN3-225ENST00000566824 ABCC2Q92887 1545 aa31.83■■■□□ 2.69
CLN3-225ENST00000566824 UHRF1BP1LA0JNW5 1464 aa31.82■■■□□ 2.69
CLN3-225ENST00000566824 NPM1P06748 294 aaKnown RBP eCLIP31.7■■■□□ 2.66
CLN3-225ENST00000566824 ZCCHC11Q5TAX3 1644 aaKnown RBP31.7■■■□□ 2.66
CLN3-225ENST00000566824 RAPGEF6Q8TEU7 1601 aa31.7■■■□□ 2.66
CLN3-225ENST00000566824 CLIP1P30622 1438 aa31.69■■■□□ 2.66
CLN3-225ENST00000566824 KDM5BQ9UGL1 1544 aa31.69■■■□□ 2.66
CLN3-225ENST00000566824 MAPKBP1O60336 1514 aa31.66■■■□□ 2.66
CLN3-225ENST00000566824 ARID3CA6NKF2 412 aa31.64■■■□□ 2.66
CLN3-225ENST00000566824 TRHP20396 242 aaPredicted RBP31.63■■■□□ 2.65
CLN3-225ENST00000566824 CEP162Q5TB80 1403 aa31.62■■■□□ 2.65
CLN3-225ENST00000566824 NUP153P49790 1475 aaKnown RBP31.59■■■□□ 2.65
CLN3-225ENST00000566824 ASXL2Q76L83 1435 aa31.57■■■□□ 2.64
CLN3-225ENST00000566824 KIF13AQ9H1H9 1805 aa31.57■■■□□ 2.64
CLN3-225ENST00000566824 ATP10BO94823 1461 aa31.57■■■□□ 2.64
CLN3-225ENST00000566824 FMN1Q68DA7 1419 aa31.55■■■□□ 2.64
CLN3-225ENST00000566824 DIP2BQ9P265 1576 aa31.5■■■□□ 2.63
CLN3-225ENST00000566824 ABCC10Q5T3U5 1492 aa31.49■■■□□ 2.63
CLN3-225ENST00000566824 LRRIQ1Q96JM4 1722 aa31.47■■■□□ 2.63
CLN3-225ENST00000566824 PCF11O94913 1555 aaKnown RBP31.47■■■□□ 2.63
CLN3-225ENST00000566824 CDK13Q14004 1512 aaKnown RBP31.44■■■□□ 2.62
CLN3-225ENST00000566824 HECW1Q76N89 1606 aa31.44■■■□□ 2.62
CLN3-225ENST00000566824 ATP1B4Q9UN42 357 aaPredicted RBP31.44■■■□□ 2.62
CLN3-225ENST00000566824 FAM69CQ0P6D2 419 aa31.43■■■□□ 2.62
CLN3-225ENST00000566824 WDR7Q9Y4E6 1490 aa31.42■■■□□ 2.62
CLN3-225ENST00000566824 CASKIN1Q8WXD9 1431 aa31.39■■■□□ 2.62
CLN3-225ENST00000566824 EPRSP07814 1512 aaKnown RBP31.38■■■□□ 2.61
CLN3-225ENST00000566824 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.38■■■□□ 2.61
CLN3-225ENST00000566824 HNRNPUL2Q1KMD3 747 aaKnown RBP31.38■■■□□ 2.61
CLN3-225ENST00000566824 KCNH8Q96L42 1107 aa31.33■■■□□ 2.61
CLN3-225ENST00000566824 GLI2P10070 1586 aa31.33■■■□□ 2.61
CLN3-225ENST00000566824 FYCO1Q9BQS8 1478 aa31.32■■■□□ 2.6
CLN3-225ENST00000566824 TSPOAP1O95153 1857 aa31.31■■■□□ 2.6
CLN3-225ENST00000566824 MAP3K4Q9Y6R4 1608 aa31.24■■■□□ 2.59
CLN3-225ENST00000566824 PPRC1Q5VV67 1664 aaKnown RBP31.23■■■□□ 2.59
CLN3-225ENST00000566824 PLEKHD1A6NEE1 506 aa31.22■■■□□ 2.59
CLN3-225ENST00000566824 VPS8Q8N3P4 1428 aa31.2■■■□□ 2.59
CLN3-225ENST00000566824 CCDC18Q5T9S5 1454 aa31.19■■■□□ 2.58
CLN3-225ENST00000566824 MAGI3Q5TCQ9 1506 aa31.18■■■□□ 2.58
CLN3-225ENST00000566824 CFAP43Q8NDM7 1665 aa31.16■■■□□ 2.58
CLN3-225ENST00000566824 ABCA9Q8IUA7 1624 aa31.15■■■□□ 2.58
CLN3-225ENST00000566824 CD109Q6YHK3 1445 aa31.11■■■□□ 2.57
CLN3-225ENST00000566824 KIF14Q15058 1648 aa31.11■■■□□ 2.57
CLN3-225ENST00000566824 TROQ12816 1431 aaPredicted RBP31.1■■■□□ 2.57
CLN3-225ENST00000566824 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.09■■■□□ 2.57
CLN3-225ENST00000566824 TTC37Q6PGP7 1564 aa31.09■■■□□ 2.57
CLN3-225ENST00000566824 CDK11AQ9UQ88 783 aaPredicted RBP31.08■■■□□ 2.57
CLN3-225ENST00000566824 TIAM1Q13009 1591 aa31■■■□□ 2.55
CLN3-225ENST00000566824 TEX14Q8IWB6 1497 aa30.95■■■□□ 2.55
CLN3-225ENST00000566824 MTUS2Q5JR59 1369 aa30.92■■■□□ 2.54
CLN3-225ENST00000566824 COL17A1Q9UMD9 1497 aaPredicted RBP30.92■■■□□ 2.54
CLN3-225ENST00000566824 MYO5CQ9NQX4 1742 aa30.9■■■□□ 2.54
CLN3-225ENST00000566824 KDM6BO15054 1643 aa30.9■■■□□ 2.54
CLN3-225ENST00000566824 EHBP1L1Q8N3D4 1523 aa30.89■■■□□ 2.53
CLN3-225ENST00000566824 KANK4Q5T7N3 995 aaPredicted RBP30.87■■■□□ 2.53
CLN3-225ENST00000566824 MAP3K1Q13233 1512 aa30.86■■■□□ 2.53
CLN3-225ENST00000566824 PLCH2O75038 1416 aa30.86■■■□□ 2.53
CLN3-225ENST00000566824 CDC42BPBQ9Y5S2 1711 aa30.85■■■□□ 2.53
CLN3-225ENST00000566824 CDC42BPAQ5VT25 1732 aa30.84■■■□□ 2.53
CLN3-225ENST00000566824 LRRC9Q6ZRR7 1453 aa30.83■■■□□ 2.53
CLN3-225ENST00000566824 FANCAO15360 1455 aa30.82■■■□□ 2.52
CLN3-225ENST00000566824 PREX2Q70Z35 1606 aa30.8■■■□□ 2.52
CLN3-225ENST00000566824 NEO1Q92859 1461 aa30.8■■■□□ 2.52
CLN3-225ENST00000566824 ARAP3Q8WWN8 1544 aa30.76■■■□□ 2.52
CLN3-225ENST00000566824 SUPT6HQ7KZ85 1726 aaKnown RBP30.76■■■□□ 2.51
CLN3-225ENST00000566824 ARHGAP5Q13017 1502 aa30.76■■■□□ 2.51
CLN3-225ENST00000566824 GPATCH8Q9UKJ3 1502 aaKnown RBP30.76■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms