RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 CCDC136Q96JN2 1154 aa14.38□□□□□ -0.11
USB1-212ENST00000566082 BICRAQ9NZM4 1560 aa14.37□□□□□ -0.11
USB1-212ENST00000566082 SALL2Q9Y467 1007 aaPredicted RBP14.36□□□□□ -0.11
USB1-212ENST00000566082 RAPGEF2Q9Y4G8 1499 aa14.35□□□□□ -0.11
USB1-212ENST00000566082 TOP2AP11388 1531 aaKnown RBP14.35□□□□□ -0.11
USB1-212ENST00000566082 RAB3GAP2Q9H2M9 1393 aa14.35□□□□□ -0.11
USB1-212ENST00000566082 RRP7BPQ9NSQ0 103 aa14.34□□□□□ -0.11
USB1-212ENST00000566082 EIF4G2P78344 907 aaKnown RBP eCLIP14.34□□□□□ -0.11
USB1-212ENST00000566082 BAZ1BQ9UIG0 1483 aaKnown RBP14.33□□□□□ -0.12
USB1-212ENST00000566082 KIF27Q86VH2 1401 aa14.33□□□□□ -0.12
USB1-212ENST00000566082 MTUS2Q5JR59 1369 aa14.33□□□□□ -0.12
USB1-212ENST00000566082 B4GALNT3Q6L9W6 998 aa14.32□□□□□ -0.12
USB1-212ENST00000566082 ZBTB47Q9UFB7 747 aaPredicted RBP14.32□□□□□ -0.12
USB1-212ENST00000566082 MYT1LQ9UL68 1186 aa14.32□□□□□ -0.12
USB1-212ENST00000566082 CCER2I3L3R5 266 aa14.31□□□□□ -0.12
USB1-212ENST00000566082 SETD5Q9C0A6 1442 aa14.28□□□□□ -0.12
USB1-212ENST00000566082 PPP4R2Q9NY27 417 aa14.28□□□□□ -0.12
USB1-212ENST00000566082 TMC1Q8TDI8 760 aa14.27□□□□□ -0.13
USB1-212ENST00000566082 ZNF777Q9ULD5 760 aaPredicted RBP14.26□□□□□ -0.13
USB1-212ENST00000566082 SMARCA4P51532 1647 aa14.24□□□□□ -0.13
USB1-212ENST00000566082 PPP1R15AO75807 674 aaPredicted RBP14.23□□□□□ -0.13
USB1-212ENST00000566082 TIMELESSQ9UNS1 1208 aa14.23□□□□□ -0.13
USB1-212ENST00000566082 SMARCA2P51531 1590 aa14.2□□□□□ -0.14
USB1-212ENST00000566082 DEKP35659 375 aaKnown RBP14.19□□□□□ -0.14
USB1-212ENST00000566082 NOP58Q9Y2X3 529 aaKnown RBP14.19□□□□□ -0.14
USB1-212ENST00000566082 EIF5BO60841 1220 aaKnown RBP14.18□□□□□ -0.14
USB1-212ENST00000566082 HSPA5P11021 654 aaKnown RBP14.16□□□□□ -0.14
USB1-212ENST00000566082 SLC4A1APQ9BWU0 796 aaKnown RBP14.16□□□□□ -0.14
USB1-212ENST00000566082 KDM2AQ9Y2K7 1162 aa14.15□□□□□ -0.15
USB1-212ENST00000566082 CARMIL1Q5VZK9 1371 aa14.14□□□□□ -0.15
USB1-212ENST00000566082 CUX2O14529 1486 aa14.14□□□□□ -0.15
USB1-212ENST00000566082 RTN4Q9NQC3 1192 aaKnown RBP14.13□□□□□ -0.15
USB1-212ENST00000566082 KIF21BO75037 1637 aa14.12□□□□□ -0.15
USB1-212ENST00000566082 FHAD1B1AJZ9 1412 aa14.12□□□□□ -0.15
USB1-212ENST00000566082 FBLN2P98095 1184 aa14.11□□□□□ -0.15
USB1-212ENST00000566082 LAS1LQ9Y4W2 734 aaKnown RBP14.11□□□□□ -0.15
USB1-212ENST00000566082 FOXD1Q16676 465 aa14.1□□□□□ -0.15
USB1-212ENST00000566082 PEG3Q9GZU2 1588 aa14.09□□□□□ -0.15
USB1-212ENST00000566082 ARHGAP35Q9NRY4 1499 aa14.07□□□□□ -0.16
USB1-212ENST00000566082 CANXP27824 592 aaKnown RBP14.06□□□□□ -0.16
USB1-212ENST00000566082 NEFMP07197 916 aa14.04□□□□□ -0.16
USB1-212ENST00000566082 ERICH6BQ5W0A0 696 aa14.03□□□□□ -0.16
USB1-212ENST00000566082 ATAD2BQ9ULI0 1458 aa14.02□□□□□ -0.17
USB1-212ENST00000566082 SYNJ1O43426 1573 aa14.01□□□□□ -0.17
USB1-212ENST00000566082 EIF4G1Q04637 1599 aaKnown RBP14.01□□□□□ -0.17
USB1-212ENST00000566082 FANCIQ9NVI1 1328 aa14.01□□□□□ -0.17
USB1-212ENST00000566082 ARAP1Q96P48 1450 aa14□□□□□ -0.17
USB1-212ENST00000566082 ARXQ96QS3 562 aa14□□□□□ -0.17
USB1-212ENST00000566082 L3MBTL2Q969R5 705 aa13.99□□□□□ -0.17
USB1-212ENST00000566082 FHOD3Q2V2M9 1422 aa13.99□□□□□ -0.17
USB1-212ENST00000566082 CARD11Q9BXL7 1154 aa13.98□□□□□ -0.17
USB1-212ENST00000566082 PHLDB1Q86UU1 1377 aa13.97□□□□□ -0.17
USB1-212ENST00000566082 RRBP1Q9P2E9 1410 aaKnown RBP13.97□□□□□ -0.17
USB1-212ENST00000566082 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.96□□□□□ -0.17
USB1-212ENST00000566082 MPHOSPH9Q99550 1183 aa13.96□□□□□ -0.18
USB1-212ENST00000566082 RGL3Q3MIN7 710 aa13.95□□□□□ -0.18
USB1-212ENST00000566082 PRKRIP1Q9H875 184 aaPredicted RBP13.94□□□□□ -0.18
USB1-212ENST00000566082 NCAPD3P42695 1498 aa13.94□□□□□ -0.18
USB1-212ENST00000566082 PPM1GO15355 546 aaPredicted RBP13.93□□□□□ -0.18
USB1-212ENST00000566082 WDR43Q15061 677 aaKnown RBP eCLIP13.93□□□□□ -0.18
USB1-212ENST00000566082 IPO9Q96P70 1041 aaKnown RBP13.93□□□□□ -0.18
USB1-212ENST00000566082 TSPY4P0CV99 314 aa13.92□□□□□ -0.18
USB1-212ENST00000566082 TSPY10P0CW01 314 aa13.92□□□□□ -0.18
USB1-212ENST00000566082 DDRGK1Q96HY6 314 aa13.92□□□□□ -0.18
USB1-212ENST00000566082 HMGXB3Q12766 1538 aa13.92□□□□□ -0.18
USB1-212ENST00000566082 FMN1Q68DA7 1419 aa13.91□□□□□ -0.18
USB1-212ENST00000566082 MSH5O43196 834 aa13.91□□□□□ -0.18
USB1-212ENST00000566082 NUDCQ9Y266 331 aa13.91□□□□□ -0.18
USB1-212ENST00000566082 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.9□□□□□ -0.18
USB1-212ENST00000566082 CFDP1Q9UEE9 299 aaPredicted RBP13.9□□□□□ -0.18
USB1-212ENST00000566082 WDR97A6NE52 1622 aa13.9□□□□□ -0.18
USB1-212ENST00000566082 RGS3P49796 1198 aa13.89□□□□□ -0.19
USB1-212ENST00000566082 CCDC18Q5T9S5 1454 aa13.89□□□□□ -0.19
USB1-212ENST00000566082 ZBED9Q6R2W3 1325 aa13.87□□□□□ -0.19
USB1-212ENST00000566082 CC2D1BQ5T0F9 858 aaKnown RBP13.87□□□□□ -0.19
USB1-212ENST00000566082 WASHC2AQ641Q2 1341 aa13.87□□□□□ -0.19
USB1-212ENST00000566082 UPF2Q9HAU5 1272 aaKnown RBP13.87□□□□□ -0.19
USB1-212ENST00000566082 IGF1RP08069 1367 aa13.86□□□□□ -0.19
USB1-212ENST00000566082 LRRC9Q6ZRR7 1453 aa13.86□□□□□ -0.19
USB1-212ENST00000566082 PRXQ9BXM0 1461 aa13.85□□□□□ -0.19
USB1-212ENST00000566082 RCAN3Q9UKA8 241 aa13.85□□□□□ -0.19
USB1-212ENST00000566082 CCDC184Q52MB2 194 aa13.85□□□□□ -0.19
USB1-212ENST00000566082 DCAF11Q8TEB1 546 aa13.84□□□□□ -0.19
USB1-212ENST00000566082 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.84□□□□□ -0.19
USB1-212ENST00000566082 PKD2Q13563 968 aa13.82□□□□□ -0.2
USB1-212ENST00000566082 ERICH3Q5RHP9 1530 aa13.82□□□□□ -0.2
USB1-212ENST00000566082 TDRD9Q8NDG6 1382 aaKnown RBP13.82□□□□□ -0.2
USB1-212ENST00000566082 TCERG1O14776 1098 aaKnown RBP13.81□□□□□ -0.2
USB1-212ENST00000566082 PAK3O75914 559 aaPredicted RBP13.81□□□□□ -0.2
USB1-212ENST00000566082 FGD6Q6ZV73 1430 aa13.78□□□□□ -0.2
USB1-212ENST00000566082 EXOC6Q8TAG9 804 aa13.78□□□□□ -0.2
USB1-212ENST00000566082 UACAQ9BZF9 1416 aa13.78□□□□□ -0.2
USB1-212ENST00000566082 CC2D2AQ9P2K1 1620 aa13.78□□□□□ -0.2
USB1-212ENST00000566082 CCDC7Q96M83 1385 aa13.77□□□□□ -0.21
USB1-212ENST00000566082 HSP90AA1P07900 732 aaKnown RBP13.76□□□□□ -0.21
USB1-212ENST00000566082 KNSTRNQ9Y448 316 aa13.76□□□□□ -0.21
USB1-212ENST00000566082 KIF7Q2M1P5 1343 aa13.76□□□□□ -0.21
USB1-212ENST00000566082 PDE4AP27815 886 aa13.76□□□□□ -0.21
USB1-212ENST00000566082 PLEKHD1A6NEE1 506 aa13.75□□□□□ -0.21
USB1-212ENST00000566082 CNTLNQ9NXG0 1405 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms