RNA–Protein interactions for RNA: ENST00000565834.1

COMMD4-213, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-213ENST00000565834 FBLN2P98095 1184 aa29.94■■■□□ 2.38
COMMD4-213ENST00000565834 CHD1O14646 1710 aa29.9■■■□□ 2.38
COMMD4-213ENST00000565834 RANGAP1P46060 587 aaPredicted RBP29.89■■■□□ 2.38
COMMD4-213ENST00000565834 CEP170Q5SW79 1584 aa29.84■■■□□ 2.37
COMMD4-213ENST00000565834 IQGAP2Q13576 1575 aa29.83■■■□□ 2.37
COMMD4-213ENST00000565834 NUP160Q12769 1436 aa29.82■■■□□ 2.36
COMMD4-213ENST00000565834 KIAA0586Q9BVV6 1533 aa29.8■■■□□ 2.36
COMMD4-213ENST00000565834 ARHGAP35Q9NRY4 1499 aa29.76■■■□□ 2.35
COMMD4-213ENST00000565834 EFCAB5A4FU69 1503 aa29.74■■■□□ 2.35
COMMD4-213ENST00000565834 ARAP1Q96P48 1450 aa29.69■■■□□ 2.34
COMMD4-213ENST00000565834 SAMD9Q5K651 1589 aa29.68■■■□□ 2.34
COMMD4-213ENST00000565834 UGGT2Q9NYU1 1516 aa29.67■■■□□ 2.34
COMMD4-213ENST00000565834 VPS8Q8N3P4 1428 aa29.62■■■□□ 2.33
COMMD4-213ENST00000565834 P3H3Q8IVL6 736 aa29.58■■■□□ 2.33
COMMD4-213ENST00000565834 FHOD3Q2V2M9 1422 aa29.57■■■□□ 2.32
COMMD4-213ENST00000565834 CLASP1Q7Z460 1538 aa29.54■■■□□ 2.32
COMMD4-213ENST00000565834 JPH4Q96JJ6 628 aa29.53■■■□□ 2.32
COMMD4-213ENST00000565834 KIAA0556O60303 1618 aa29.53■■■□□ 2.32
COMMD4-213ENST00000565834 DISP1Q96F81 1524 aa29.52■■■□□ 2.32
COMMD4-213ENST00000565834 SHROOM2Q13796 1616 aa29.49■■■□□ 2.31
COMMD4-213ENST00000565834 CARMIL2Q6F5E8 1435 aa29.46■■■□□ 2.31
COMMD4-213ENST00000565834 FMN1Q68DA7 1419 aa29.45■■■□□ 2.3
COMMD4-213ENST00000565834 PRG4Q92954 1404 aaPredicted RBP29.41■■■□□ 2.3
COMMD4-213ENST00000565834 OSCARQ8IYS5 282 aa29.4■■■□□ 2.3
COMMD4-213ENST00000565834 PCF11O94913 1555 aaKnown RBP29.39■■■□□ 2.29
COMMD4-213ENST00000565834 FYCO1Q9BQS8 1478 aa29.33■■■□□ 2.29
COMMD4-213ENST00000565834 CASKIN1Q8WXD9 1431 aa29.33■■■□□ 2.29
COMMD4-213ENST00000565834 APLP2Q06481 763 aa29.31■■■□□ 2.28
COMMD4-213ENST00000565834 ERCC6L2Q5T890 1561 aa29.26■■■□□ 2.28
COMMD4-213ENST00000565834 TTBK1Q5TCY1 1321 aaPredicted RBP29.25■■■□□ 2.27
COMMD4-213ENST00000565834 ATP1B4Q9UN42 357 aaPredicted RBP29.23■■■□□ 2.27
COMMD4-213ENST00000565834 HECW1Q76N89 1606 aa29.22■■■□□ 2.27
COMMD4-213ENST00000565834 PPARGC1BQ86YN6 1023 aaKnown RBP29.2■■■□□ 2.26
COMMD4-213ENST00000565834 RAPGEF6Q8TEU7 1601 aa29.2■■■□□ 2.26
COMMD4-213ENST00000565834 MAP3K1Q13233 1512 aa29.19■■■□□ 2.26
COMMD4-213ENST00000565834 CFAP43Q8NDM7 1665 aa29.19■■■□□ 2.26
COMMD4-213ENST00000565834 PTPRGP23470 1445 aa29.18■■■□□ 2.26
COMMD4-213ENST00000565834 TIAM1Q13009 1591 aa29.18■■■□□ 2.26
COMMD4-213ENST00000565834 LRRIQ1Q96JM4 1722 aa29.17■■■□□ 2.26
COMMD4-213ENST00000565834 PLB1Q6P1J6 1458 aa29.14■■■□□ 2.25
COMMD4-213ENST00000565834 ABCA8O94911 1581 aa29.12■■■□□ 2.25
COMMD4-213ENST00000565834 CCDC18Q5T9S5 1454 aa29.11■■■□□ 2.25
COMMD4-213ENST00000565834 NUP153P49790 1475 aaKnown RBP29.08■■■□□ 2.25
COMMD4-213ENST00000565834 EPRSP07814 1512 aaKnown RBP29.07■■■□□ 2.24
COMMD4-213ENST00000565834 KANK4Q5T7N3 995 aaPredicted RBP29.05■■■□□ 2.24
COMMD4-213ENST00000565834 LRRC9Q6ZRR7 1453 aa29.02■■■□□ 2.24
COMMD4-213ENST00000565834 CDK13Q14004 1512 aaKnown RBP29.01■■■□□ 2.24
COMMD4-213ENST00000565834 UACAQ9BZF9 1416 aa29.01■■■□□ 2.24
COMMD4-213ENST00000565834 ARID3CA6NKF2 412 aa28.97■■■□□ 2.23
COMMD4-213ENST00000565834 ABCC2Q92887 1545 aa28.96■■■□□ 2.23
COMMD4-213ENST00000565834 DNAJC5Q9H3Z4 198 aa28.96■■■□□ 2.23
COMMD4-213ENST00000565834 ARHGEF11O15085 1522 aa28.94■■■□□ 2.22
COMMD4-213ENST00000565834 MTUS2Q5JR59 1369 aa28.93■■■□□ 2.22
COMMD4-213ENST00000565834 EHBP1L1Q8N3D4 1523 aa28.92■■■□□ 2.22
COMMD4-213ENST00000565834 TRIM26Q12899 539 aaPredicted RBP28.91■■■□□ 2.22
COMMD4-213ENST00000565834 UHRF1BP1LA0JNW5 1464 aa28.91■■■□□ 2.22
COMMD4-213ENST00000565834 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.89■■■□□ 2.22
COMMD4-213ENST00000565834 HNRNPUL2Q1KMD3 747 aaKnown RBP28.89■■■□□ 2.22
COMMD4-213ENST00000565834 MAGI3Q5TCQ9 1506 aa28.89■■■□□ 2.21
COMMD4-213ENST00000565834 ATP10BO94823 1461 aa28.89■■■□□ 2.21
COMMD4-213ENST00000565834 CDK11AQ9UQ88 783 aaPredicted RBP28.86■■■□□ 2.21
COMMD4-213ENST00000565834 RIMBP3CA6NJZ7 1639 aa28.85■■■□□ 2.21
COMMD4-213ENST00000565834 RIMBP3BA6NNM3 1639 aa28.85■■■□□ 2.21
COMMD4-213ENST00000565834 RIMBP3Q9UFD9 1639 aa28.85■■■□□ 2.21
COMMD4-213ENST00000565834 ADCY10Q96PN6 1610 aa28.84■■■□□ 2.21
COMMD4-213ENST00000565834 SUPT6HQ7KZ85 1726 aaKnown RBP28.83■■■□□ 2.21
COMMD4-213ENST00000565834 ZCCHC11Q5TAX3 1644 aaKnown RBP28.78■■■□□ 2.2
COMMD4-213ENST00000565834 KDM5BQ9UGL1 1544 aa28.78■■■□□ 2.2
COMMD4-213ENST00000565834 TROQ12816 1431 aaPredicted RBP28.77■■■□□ 2.2
COMMD4-213ENST00000565834 PCGF6Q9BYE7 350 aa28.77■■■□□ 2.2
COMMD4-213ENST00000565834 NCOA2Q15596 1464 aa28.75■■■□□ 2.19
COMMD4-213ENST00000565834 PLEKHD1A6NEE1 506 aa28.74■■■□□ 2.19
COMMD4-213ENST00000565834 PHLDB1Q86UU1 1377 aa28.71■■■□□ 2.19
COMMD4-213ENST00000565834 RRBP1Q9P2E9 1410 aaKnown RBP28.66■■■□□ 2.18
COMMD4-213ENST00000565834 KIF14Q15058 1648 aa28.66■■■□□ 2.18
COMMD4-213ENST00000565834 CYB5RLQ6IPT4 315 aa28.63■■■□□ 2.17
COMMD4-213ENST00000565834 MYOM3Q5VTT5 1437 aa28.61■■■□□ 2.17
COMMD4-213ENST00000565834 CCNB3Q8WWL7 1395 aa28.59■■■□□ 2.17
COMMD4-213ENST00000565834 NPM1P06748 294 aaKnown RBP eCLIP28.59■■■□□ 2.17
COMMD4-213ENST00000565834 FGD6Q6ZV73 1430 aa28.57■■■□□ 2.16
COMMD4-213ENST00000565834 ITSN2Q9NZM3 1697 aa28.54■■■□□ 2.16
COMMD4-213ENST00000565834 ABCC10Q5T3U5 1492 aa28.53■■■□□ 2.16
COMMD4-213ENST00000565834 WDR7Q9Y4E6 1490 aa28.53■■■□□ 2.16
COMMD4-213ENST00000565834 ASXL2Q76L83 1435 aa28.5■■■□□ 2.15
COMMD4-213ENST00000565834 MIA2Q96PC5 1412 aa28.49■■■□□ 2.15
COMMD4-213ENST00000565834 CDC42BPAQ5VT25 1732 aa28.49■■■□□ 2.15
COMMD4-213ENST00000565834 PTPN23Q9H3S7 1636 aa28.48■■■□□ 2.15
COMMD4-213ENST00000565834 KCNH8Q96L42 1107 aa28.47■■■□□ 2.15
COMMD4-213ENST00000565834 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.47■■■□□ 2.15
COMMD4-213ENST00000565834 GPATCH8Q9UKJ3 1502 aaKnown RBP28.47■■■□□ 2.15
COMMD4-213ENST00000565834 TTC37Q6PGP7 1564 aa28.46■■■□□ 2.15
COMMD4-213ENST00000565834 FAM50AQ14320 339 aaKnown RBP28.45■■■□□ 2.15
COMMD4-213ENST00000565834 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.45■■■□□ 2.15
COMMD4-213ENST00000565834 TCOF1Q13428 1488 aaKnown RBP28.42■■■□□ 2.14
COMMD4-213ENST00000565834 MAPKBP1O60336 1514 aa28.41■■■□□ 2.14
COMMD4-213ENST00000565834 MYO5CQ9NQX4 1742 aa28.41■■■□□ 2.14
COMMD4-213ENST00000565834 PREX2Q70Z35 1606 aa28.41■■■□□ 2.14
COMMD4-213ENST00000565834 CFDP1Q9UEE9 299 aaPredicted RBP28.38■■■□□ 2.13
COMMD4-213ENST00000565834 CDC42BPBQ9Y5S2 1711 aa28.37■■■□□ 2.13
COMMD4-213ENST00000565834 ABCA9Q8IUA7 1624 aa28.35■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms