RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 KIAA0586Q9BVV6 1533 aa33.62■■■□□ 2.97
CLN3-212ENST00000564574 CLASP1Q7Z460 1538 aa33.61■■■□□ 2.97
CLN3-212ENST00000564574 UBTFP17480 764 aaKnown RBP33.57■■■□□ 2.96
CLN3-212ENST00000564574 EHMT2Q96KQ7 1210 aa33.56■■■□□ 2.96
CLN3-212ENST00000564574 IQGAP2Q13576 1575 aa33.55■■■□□ 2.96
CLN3-212ENST00000564574 TNIKQ9UKE5 1360 aa33.49■■■□□ 2.95
CLN3-212ENST00000564574 LOC105371045A0A1W2PR82 267 aa33.46■■■□□ 2.95
CLN3-212ENST00000564574 SHROOM2Q13796 1616 aa33.46■■■□□ 2.95
CLN3-212ENST00000564574 UGGT2Q9NYU1 1516 aa33.39■■■□□ 2.94
CLN3-212ENST00000564574 JPH4Q96JJ6 628 aa33.36■■■□□ 2.93
CLN3-212ENST00000564574 EFCAB5A4FU69 1503 aa33.27■■■□□ 2.92
CLN3-212ENST00000564574 SAMD9Q5K651 1589 aa33.26■■■□□ 2.92
CLN3-212ENST00000564574 PRG4Q92954 1404 aaPredicted RBP33.26■■■□□ 2.91
CLN3-212ENST00000564574 CARMIL2Q6F5E8 1435 aa33.24■■■□□ 2.91
CLN3-212ENST00000564574 KIAA0556O60303 1618 aa33.23■■■□□ 2.91
CLN3-212ENST00000564574 DISP1Q96F81 1524 aa33.23■■■□□ 2.91
CLN3-212ENST00000564574 RIMBP3CA6NJZ7 1639 aa33.22■■■□□ 2.91
CLN3-212ENST00000564574 RIMBP3BA6NNM3 1639 aa33.22■■■□□ 2.91
CLN3-212ENST00000564574 RIMBP3Q9UFD9 1639 aa33.22■■■□□ 2.91
CLN3-212ENST00000564574 CEP162Q5TB80 1403 aa33.19■■■□□ 2.9
CLN3-212ENST00000564574 CLIP1P30622 1438 aa33.18■■■□□ 2.9
CLN3-212ENST00000564574 RANGAP1P46060 587 aaPredicted RBP33.16■■■□□ 2.9
CLN3-212ENST00000564574 ARHGEF11O15085 1522 aa33.16■■■□□ 2.9
CLN3-212ENST00000564574 ERCC6L2Q5T890 1561 aa33.15■■■□□ 2.9
CLN3-212ENST00000564574 ARHGAP35Q9NRY4 1499 aa33.14■■■□□ 2.9
CLN3-212ENST00000564574 FHOD3Q2V2M9 1422 aa33.02■■■□□ 2.88
CLN3-212ENST00000564574 P3H3Q8IVL6 736 aa33.01■■■□□ 2.87
CLN3-212ENST00000564574 ARAP1Q96P48 1450 aa32.97■■■□□ 2.87
CLN3-212ENST00000564574 PTPRGP23470 1445 aa32.96■■■□□ 2.87
CLN3-212ENST00000564574 CYB5RLQ6IPT4 315 aa32.93■■■□□ 2.86
CLN3-212ENST00000564574 FMN1Q68DA7 1419 aa32.92■■■□□ 2.86
CLN3-212ENST00000564574 TTBK1Q5TCY1 1321 aaPredicted RBP32.82■■■□□ 2.84
CLN3-212ENST00000564574 ABCA8O94911 1581 aa32.8■■■□□ 2.84
CLN3-212ENST00000564574 RAPGEF6Q8TEU7 1601 aa32.8■■■□□ 2.84
CLN3-212ENST00000564574 UACAQ9BZF9 1416 aa32.78■■■□□ 2.84
CLN3-212ENST00000564574 VPS8Q8N3P4 1428 aa32.77■■■□□ 2.84
CLN3-212ENST00000564574 UHRF1BP1LA0JNW5 1464 aa32.75■■■□□ 2.83
CLN3-212ENST00000564574 PLB1Q6P1J6 1458 aa32.75■■■□□ 2.83
CLN3-212ENST00000564574 ABCC2Q92887 1545 aa32.74■■■□□ 2.83
CLN3-212ENST00000564574 PCF11O94913 1555 aaKnown RBP32.73■■■□□ 2.83
CLN3-212ENST00000564574 CASKIN1Q8WXD9 1431 aa32.72■■■□□ 2.83
CLN3-212ENST00000564574 HECW1Q76N89 1606 aa32.71■■■□□ 2.83
CLN3-212ENST00000564574 FYCO1Q9BQS8 1478 aa32.7■■■□□ 2.83
CLN3-212ENST00000564574 ADCY10Q96PN6 1610 aa32.69■■■□□ 2.82
CLN3-212ENST00000564574 NUP153P49790 1475 aaKnown RBP32.62■■■□□ 2.81
CLN3-212ENST00000564574 LRRIQ1Q96JM4 1722 aa32.57■■■□□ 2.8
CLN3-212ENST00000564574 KDM5BQ9UGL1 1544 aa32.56■■■□□ 2.8
CLN3-212ENST00000564574 CCDC18Q5T9S5 1454 aa32.54■■■□□ 2.8
CLN3-212ENST00000564574 ATP1B4Q9UN42 357 aaPredicted RBP32.54■■■□□ 2.8
CLN3-212ENST00000564574 EPRSP07814 1512 aaKnown RBP32.54■■■□□ 2.8
CLN3-212ENST00000564574 ZCCHC11Q5TAX3 1644 aaKnown RBP32.53■■■□□ 2.8
CLN3-212ENST00000564574 TRHP20396 242 aaPredicted RBP32.53■■■□□ 2.8
CLN3-212ENST00000564574 ATP10BO94823 1461 aa32.49■■■□□ 2.79
CLN3-212ENST00000564574 NPM1P06748 294 aaKnown RBP eCLIP32.49■■■□□ 2.79
CLN3-212ENST00000564574 CFAP43Q8NDM7 1665 aa32.46■■■□□ 2.79
CLN3-212ENST00000564574 CDK13Q14004 1512 aaKnown RBP32.46■■■□□ 2.79
CLN3-212ENST00000564574 MAP3K1Q13233 1512 aa32.45■■■□□ 2.78
CLN3-212ENST00000564574 TIAM1Q13009 1591 aa32.41■■■□□ 2.78
CLN3-212ENST00000564574 ARID3CA6NKF2 412 aa32.4■■■□□ 2.78
CLN3-212ENST00000564574 APLP2Q06481 763 aa32.39■■■□□ 2.78
CLN3-212ENST00000564574 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.38■■■□□ 2.77
CLN3-212ENST00000564574 HNRNPUL2Q1KMD3 747 aaKnown RBP32.38■■■□□ 2.77
CLN3-212ENST00000564574 MAPKBP1O60336 1514 aa32.37■■■□□ 2.77
CLN3-212ENST00000564574 CDK11AQ9UQ88 783 aaPredicted RBP32.36■■■□□ 2.77
CLN3-212ENST00000564574 ASXL2Q76L83 1435 aa32.29■■■□□ 2.76
CLN3-212ENST00000564574 PLEKHD1A6NEE1 506 aa32.29■■■□□ 2.76
CLN3-212ENST00000564574 WDR7Q9Y4E6 1490 aa32.27■■■□□ 2.76
CLN3-212ENST00000564574 EHBP1L1Q8N3D4 1523 aa32.26■■■□□ 2.75
CLN3-212ENST00000564574 MAGI3Q5TCQ9 1506 aa32.25■■■□□ 2.75
CLN3-212ENST00000564574 TROQ12816 1431 aaPredicted RBP32.25■■■□□ 2.75
CLN3-212ENST00000564574 LRRC9Q6ZRR7 1453 aa32.23■■■□□ 2.75
CLN3-212ENST00000564574 MTUS2Q5JR59 1369 aa32.22■■■□□ 2.75
CLN3-212ENST00000564574 KIF14Q15058 1648 aa32.16■■■□□ 2.74
CLN3-212ENST00000564574 KANK4Q5T7N3 995 aaPredicted RBP32.14■■■□□ 2.74
CLN3-212ENST00000564574 SUPT6HQ7KZ85 1726 aaKnown RBP32.14■■■□□ 2.74
CLN3-212ENST00000564574 ABCC10Q5T3U5 1492 aa32.1■■■□□ 2.73
CLN3-212ENST00000564574 GLI2P10070 1586 aa32.09■■■□□ 2.73
CLN3-212ENST00000564574 DIP2BQ9P265 1576 aa32.09■■■□□ 2.73
CLN3-212ENST00000564574 KCNH8Q96L42 1107 aa32.07■■■□□ 2.72
CLN3-212ENST00000564574 ABCA9Q8IUA7 1624 aa32.06■■■□□ 2.72
CLN3-212ENST00000564574 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.04■■■□□ 2.72
CLN3-212ENST00000564574 KIF13AQ9H1H9 1805 aa32.03■■■□□ 2.72
CLN3-212ENST00000564574 NCOA2Q15596 1464 aa32.02■■■□□ 2.72
CLN3-212ENST00000564574 TTC37Q6PGP7 1564 aa31.99■■■□□ 2.71
CLN3-212ENST00000564574 MYO5CQ9NQX4 1742 aa31.96■■■□□ 2.71
CLN3-212ENST00000564574 MAP3K4Q9Y6R4 1608 aa31.96■■■□□ 2.71
CLN3-212ENST00000564574 FAM69CQ0P6D2 419 aa31.94■■■□□ 2.7
CLN3-212ENST00000564574 ITSN2Q9NZM3 1697 aa31.94■■■□□ 2.7
CLN3-212ENST00000564574 CDC42BPAQ5VT25 1732 aa31.92■■■□□ 2.7
CLN3-212ENST00000564574 PPARGC1BQ86YN6 1023 aaKnown RBP31.91■■■□□ 2.7
CLN3-212ENST00000564574 CCNB3Q8WWL7 1395 aa31.91■■■□□ 2.7
CLN3-212ENST00000564574 PREX2Q70Z35 1606 aa31.89■■■□□ 2.7
CLN3-212ENST00000564574 CD109Q6YHK3 1445 aa31.88■■■□□ 2.69
CLN3-212ENST00000564574 ARAP3Q8WWN8 1544 aa31.88■■■□□ 2.69
CLN3-212ENST00000564574 GPATCH8Q9UKJ3 1502 aaKnown RBP31.86■■■□□ 2.69
CLN3-212ENST00000564574 CDC42BPBQ9Y5S2 1711 aa31.86■■■□□ 2.69
CLN3-212ENST00000564574 PLCH2O75038 1416 aa31.85■■■□□ 2.69
CLN3-212ENST00000564574 MYOM3Q5VTT5 1437 aa31.83■■■□□ 2.69
CLN3-212ENST00000564574 PHLDB1Q86UU1 1377 aa31.83■■■□□ 2.69
CLN3-212ENST00000564574 TSPOAP1O95153 1857 aa31.8■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms