RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CLASP1Q7Z460 1538 aa27.06■■□□□ 1.92
VPS4A-202ENST00000562754 UBTFP17480 764 aaKnown RBP27.03■■□□□ 1.92
VPS4A-202ENST00000562754 KIAA0586Q9BVV6 1533 aa27.03■■□□□ 1.92
VPS4A-202ENST00000562754 IQGAP2Q13576 1575 aa27.01■■□□□ 1.92
VPS4A-202ENST00000562754 TNIKQ9UKE5 1360 aa26.99■■□□□ 1.91
VPS4A-202ENST00000562754 OSCARQ8IYS5 282 aa26.96■■□□□ 1.91
VPS4A-202ENST00000562754 SHROOM2Q13796 1616 aa26.93■■□□□ 1.9
VPS4A-202ENST00000562754 UGGT2Q9NYU1 1516 aa26.89■■□□□ 1.89
VPS4A-202ENST00000562754 CEP162Q5TB80 1403 aa26.82■■□□□ 1.88
VPS4A-202ENST00000562754 SAMD9Q5K651 1589 aa26.81■■□□□ 1.88
VPS4A-202ENST00000562754 JPH4Q96JJ6 628 aa26.81■■□□□ 1.88
VPS4A-202ENST00000562754 DISP1Q96F81 1524 aa26.79■■□□□ 1.88
VPS4A-202ENST00000562754 RANGAP1P46060 587 aaPredicted RBP26.78■■□□□ 1.88
VPS4A-202ENST00000562754 KIAA0556O60303 1618 aa26.77■■□□□ 1.88
VPS4A-202ENST00000562754 ERCC6L2Q5T890 1561 aa26.77■■□□□ 1.88
VPS4A-202ENST00000562754 EFCAB5A4FU69 1503 aa26.77■■□□□ 1.88
VPS4A-202ENST00000562754 CLIP1P30622 1438 aa26.76■■□□□ 1.87
VPS4A-202ENST00000562754 PRG4Q92954 1404 aaPredicted RBP26.76■■□□□ 1.87
VPS4A-202ENST00000562754 ARHGAP35Q9NRY4 1499 aa26.75■■□□□ 1.87
VPS4A-202ENST00000562754 CARMIL2Q6F5E8 1435 aa26.68■■□□□ 1.86
VPS4A-202ENST00000562754 ARAP1Q96P48 1450 aa26.66■■□□□ 1.86
VPS4A-202ENST00000562754 FHOD3Q2V2M9 1422 aa26.65■■□□□ 1.86
VPS4A-202ENST00000562754 ARHGEF11O15085 1522 aa26.65■■□□□ 1.86
VPS4A-202ENST00000562754 P3H3Q8IVL6 736 aa26.63■■□□□ 1.85
VPS4A-202ENST00000562754 RIMBP3CA6NJZ7 1639 aa26.6■■□□□ 1.85
VPS4A-202ENST00000562754 RIMBP3BA6NNM3 1639 aa26.6■■□□□ 1.85
VPS4A-202ENST00000562754 RIMBP3Q9UFD9 1639 aa26.6■■□□□ 1.85
VPS4A-202ENST00000562754 PTPRGP23470 1445 aa26.49■■□□□ 1.83
VPS4A-202ENST00000562754 TTBK1Q5TCY1 1321 aaPredicted RBP26.46■■□□□ 1.83
VPS4A-202ENST00000562754 FMN1Q68DA7 1419 aa26.46■■□□□ 1.83
VPS4A-202ENST00000562754 PCF11O94913 1555 aaKnown RBP26.45■■□□□ 1.82
VPS4A-202ENST00000562754 VPS8Q8N3P4 1428 aa26.44■■□□□ 1.82
VPS4A-202ENST00000562754 ABCA8O94911 1581 aa26.43■■□□□ 1.82
VPS4A-202ENST00000562754 DNAJC5Q9H3Z4 198 aa26.43■■□□□ 1.82
VPS4A-202ENST00000562754 PLB1Q6P1J6 1458 aa26.42■■□□□ 1.82
VPS4A-202ENST00000562754 RAPGEF6Q8TEU7 1601 aa26.41■■□□□ 1.82
VPS4A-202ENST00000562754 CASKIN1Q8WXD9 1431 aa26.36■■□□□ 1.81
VPS4A-202ENST00000562754 UACAQ9BZF9 1416 aa26.36■■□□□ 1.81
VPS4A-202ENST00000562754 FYCO1Q9BQS8 1478 aa26.35■■□□□ 1.81
VPS4A-202ENST00000562754 ABCC2Q92887 1545 aa26.34■■□□□ 1.81
VPS4A-202ENST00000562754 HECW1Q76N89 1606 aa26.34■■□□□ 1.81
VPS4A-202ENST00000562754 ADCY10Q96PN6 1610 aa26.34■■□□□ 1.81
VPS4A-202ENST00000562754 LRRIQ1Q96JM4 1722 aa26.32■■□□□ 1.8
VPS4A-202ENST00000562754 UHRF1BP1LA0JNW5 1464 aa26.31■■□□□ 1.8
VPS4A-202ENST00000562754 NUP153P49790 1475 aaKnown RBP26.31■■□□□ 1.8
VPS4A-202ENST00000562754 CYB5RLQ6IPT4 315 aa26.27■■□□□ 1.8
VPS4A-202ENST00000562754 EPRSP07814 1512 aaKnown RBP26.22■■□□□ 1.79
VPS4A-202ENST00000562754 CDK13Q14004 1512 aaKnown RBP26.22■■□□□ 1.79
VPS4A-202ENST00000562754 CFAP43Q8NDM7 1665 aa26.2■■□□□ 1.78
VPS4A-202ENST00000562754 ATP1B4Q9UN42 357 aaPredicted RBP26.2■■□□□ 1.78
VPS4A-202ENST00000562754 ZCCHC11Q5TAX3 1644 aaKnown RBP26.2■■□□□ 1.78
VPS4A-202ENST00000562754 KDM5BQ9UGL1 1544 aa26.19■■□□□ 1.78
VPS4A-202ENST00000562754 ATP10BO94823 1461 aa26.18■■□□□ 1.78
VPS4A-202ENST00000562754 ARID3CA6NKF2 412 aa26.18■■□□□ 1.78
VPS4A-202ENST00000562754 CCDC18Q5T9S5 1454 aa26.17■■□□□ 1.78
VPS4A-202ENST00000562754 TIAM1Q13009 1591 aa26.16■■□□□ 1.78
VPS4A-202ENST00000562754 MAP3K1Q13233 1512 aa26.12■■□□□ 1.77
VPS4A-202ENST00000562754 MAGI3Q5TCQ9 1506 aa26.08■■□□□ 1.77
VPS4A-202ENST00000562754 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.02■■□□□ 1.76
VPS4A-202ENST00000562754 HNRNPUL2Q1KMD3 747 aaKnown RBP26.02■■□□□ 1.76
VPS4A-202ENST00000562754 MAPKBP1O60336 1514 aa26■■□□□ 1.75
VPS4A-202ENST00000562754 LRRC9Q6ZRR7 1453 aa26■■□□□ 1.75
VPS4A-202ENST00000562754 APLP2Q06481 763 aa26■■□□□ 1.75
VPS4A-202ENST00000562754 EHBP1L1Q8N3D4 1523 aa25.99■■□□□ 1.75
VPS4A-202ENST00000562754 NPM1P06748 294 aaKnown RBP eCLIP25.99■■□□□ 1.75
VPS4A-202ENST00000562754 ASXL2Q76L83 1435 aa25.98■■□□□ 1.75
VPS4A-202ENST00000562754 KANK4Q5T7N3 995 aaPredicted RBP25.97■■□□□ 1.75
VPS4A-202ENST00000562754 WDR7Q9Y4E6 1490 aa25.97■■□□□ 1.75
VPS4A-202ENST00000562754 TROQ12816 1431 aaPredicted RBP25.97■■□□□ 1.75
VPS4A-202ENST00000562754 MTUS2Q5JR59 1369 aa25.94■■□□□ 1.74
VPS4A-202ENST00000562754 CDK11AQ9UQ88 783 aaPredicted RBP25.93■■□□□ 1.74
VPS4A-202ENST00000562754 KIF14Q15058 1648 aa25.92■■□□□ 1.74
VPS4A-202ENST00000562754 PLEKHD1A6NEE1 506 aa25.91■■□□□ 1.74
VPS4A-202ENST00000562754 PPARGC1BQ86YN6 1023 aaKnown RBP25.88■■□□□ 1.73
VPS4A-202ENST00000562754 SUPT6HQ7KZ85 1726 aaKnown RBP25.88■■□□□ 1.73
VPS4A-202ENST00000562754 TTC37Q6PGP7 1564 aa25.82■■□□□ 1.72
VPS4A-202ENST00000562754 DIP2BQ9P265 1576 aa25.82■■□□□ 1.72
VPS4A-202ENST00000562754 NCOA2Q15596 1464 aa25.82■■□□□ 1.72
VPS4A-202ENST00000562754 ABCC10Q5T3U5 1492 aa25.81■■□□□ 1.72
VPS4A-202ENST00000562754 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.81■■□□□ 1.72
VPS4A-202ENST00000562754 KCNH8Q96L42 1107 aa25.8■■□□□ 1.72
VPS4A-202ENST00000562754 ABCA9Q8IUA7 1624 aa25.79■■□□□ 1.72
VPS4A-202ENST00000562754 GLI2P10070 1586 aa25.76■■□□□ 1.71
VPS4A-202ENST00000562754 KIF13AQ9H1H9 1805 aa25.76■■□□□ 1.71
VPS4A-202ENST00000562754 CDC42BPAQ5VT25 1732 aa25.73■■□□□ 1.71
VPS4A-202ENST00000562754 PHLDB1Q86UU1 1377 aa25.72■■□□□ 1.71
VPS4A-202ENST00000562754 MYO5CQ9NQX4 1742 aa25.71■■□□□ 1.71
VPS4A-202ENST00000562754 MAP3K4Q9Y6R4 1608 aa25.7■■□□□ 1.71
VPS4A-202ENST00000562754 PREX2Q70Z35 1606 aa25.7■■□□□ 1.7
VPS4A-202ENST00000562754 ITSN2Q9NZM3 1697 aa25.69■■□□□ 1.7
VPS4A-202ENST00000562754 GPATCH8Q9UKJ3 1502 aaKnown RBP25.68■■□□□ 1.7
VPS4A-202ENST00000562754 CCNB3Q8WWL7 1395 aa25.68■■□□□ 1.7
VPS4A-202ENST00000562754 CDC42BPBQ9Y5S2 1711 aa25.66■■□□□ 1.7
VPS4A-202ENST00000562754 MYOM3Q5VTT5 1437 aa25.66■■□□□ 1.7
VPS4A-202ENST00000562754 FAM69CQ0P6D2 419 aa25.64■■□□□ 1.7
VPS4A-202ENST00000562754 ARAP3Q8WWN8 1544 aa25.62■■□□□ 1.69
VPS4A-202ENST00000562754 PLCH2O75038 1416 aa25.62■■□□□ 1.69
VPS4A-202ENST00000562754 CD109Q6YHK3 1445 aa25.61■■□□□ 1.69
VPS4A-202ENST00000562754 PPRC1Q5VV67 1664 aaKnown RBP25.61■■□□□ 1.69
VPS4A-202ENST00000562754 FGD6Q6ZV73 1430 aa25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms