RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 ERCC6Q03468 1493 aa21.43■■□□□ 1.02
CARMIL3-203ENST00000560349 FHOD3Q2V2M9 1422 aa21.42■■□□□ 1.02
CARMIL3-203ENST00000560349 ZEB1P37275 1124 aaPredicted RBP21.42■■□□□ 1.02
CARMIL3-203ENST00000560349 ZNF608Q9ULD9 1512 aaPredicted RBP21.38■■□□□ 1.01
CARMIL3-203ENST00000560349 CTTNBP2Q8WZ74 1663 aa21.32■■□□□ 1
CARMIL3-203ENST00000560349 WDR62O43379 1518 aa21.3■■□□□ 1
CARMIL3-203ENST00000560349 PCF11O94913 1555 aaKnown RBP21.29■■□□□ 1
CARMIL3-203ENST00000560349 PBRM1Q86U86 1689 aa21.29■■□□□ 1
CARMIL3-203ENST00000560349 ITGAEP38570 1179 aa21.27■■□□□ 1
CARMIL3-203ENST00000560349 IFT140Q96RY7 1462 aa21.24■□□□□ 0.99
CARMIL3-203ENST00000560349 FHAD1B1AJZ9 1412 aa21.23■□□□□ 0.99
CARMIL3-203ENST00000560349 TIAM1Q13009 1591 aa21.23■□□□□ 0.99
CARMIL3-203ENST00000560349 GRIN2BQ13224 1484 aa21.22■□□□□ 0.99
CARMIL3-203ENST00000560349 THOC2Q8NI27 1593 aaKnown RBP21.2■□□□□ 0.98
CARMIL3-203ENST00000560349 EFCAB5A4FU69 1503 aa21.2■□□□□ 0.98
CARMIL3-203ENST00000560349 ADAMTS12P58397 1594 aa21.2■□□□□ 0.98
CARMIL3-203ENST00000560349 PELP1Q8IZL8 1130 aaKnown RBP21.18■□□□□ 0.98
CARMIL3-203ENST00000560349 SNAPC4Q5SXM2 1469 aa21.17■□□□□ 0.98
CARMIL3-203ENST00000560349 LRRC9Q6ZRR7 1453 aa21.17■□□□□ 0.98
CARMIL3-203ENST00000560349 EIF4G3O43432 1585 aaKnown RBP21.16■□□□□ 0.98
CARMIL3-203ENST00000560349 FBLN2P98095 1184 aa21.16■□□□□ 0.98
CARMIL3-203ENST00000560349 ARID3CA6NKF2 412 aa21.14■□□□□ 0.98
CARMIL3-203ENST00000560349 CCNB3Q8WWL7 1395 aa21.14■□□□□ 0.97
CARMIL3-203ENST00000560349 PHLDB1Q86UU1 1377 aa21.14■□□□□ 0.97
CARMIL3-203ENST00000560349 RRBP1Q9P2E9 1410 aaKnown RBP21.13■□□□□ 0.97
CARMIL3-203ENST00000560349 CASKIN1Q8WXD9 1431 aa21.12■□□□□ 0.97
CARMIL3-203ENST00000560349 SAMD9Q5K651 1589 aa21.12■□□□□ 0.97
CARMIL3-203ENST00000560349 FYCO1Q9BQS8 1478 aa21.12■□□□□ 0.97
CARMIL3-203ENST00000560349 FMN1Q68DA7 1419 aa21.11■□□□□ 0.97
CARMIL3-203ENST00000560349 FAM50AQ14320 339 aaKnown RBP21.09■□□□□ 0.97
CARMIL3-203ENST00000560349 CFAP43Q8NDM7 1665 aa21.08■□□□□ 0.97
CARMIL3-203ENST00000560349 IQGAP2Q13576 1575 aa21.08■□□□□ 0.96
CARMIL3-203ENST00000560349 MAP3K1Q13233 1512 aa21.07■□□□□ 0.96
CARMIL3-203ENST00000560349 CHMP7Q8WUX9 453 aaPredicted RBP21.05■□□□□ 0.96
CARMIL3-203ENST00000560349 GRIN2AQ12879 1464 aa21.02■□□□□ 0.95
CARMIL3-203ENST00000560349 MTUS2Q5JR59 1369 aa21.01■□□□□ 0.95
CARMIL3-203ENST00000560349 LRRIQ1Q96JM4 1722 aa21.01■□□□□ 0.95
CARMIL3-203ENST00000560349 KIAA0586Q9BVV6 1533 aa20.93■□□□□ 0.94
CARMIL3-203ENST00000560349 MAGI1Q96QZ7 1491 aaPredicted RBP20.93■□□□□ 0.94
CARMIL3-203ENST00000560349 DHX57Q6P158 1386 aaKnown RBP20.92■□□□□ 0.94
CARMIL3-203ENST00000560349 SYNJ2O15056 1496 aa20.92■□□□□ 0.94
CARMIL3-203ENST00000560349 CDK13Q14004 1512 aaKnown RBP20.91■□□□□ 0.94
CARMIL3-203ENST00000560349 CEP170Q5SW79 1584 aa20.91■□□□□ 0.94
CARMIL3-203ENST00000560349 DISP1Q96F81 1524 aa20.9■□□□□ 0.94
CARMIL3-203ENST00000560349 MAGI3Q5TCQ9 1506 aa20.9■□□□□ 0.94
CARMIL3-203ENST00000560349 UGGT2Q9NYU1 1516 aa20.9■□□□□ 0.94
CARMIL3-203ENST00000560349 RAB3GAP2Q9H2M9 1393 aa20.88■□□□□ 0.93
CARMIL3-203ENST00000560349 KIAA0556O60303 1618 aa20.86■□□□□ 0.93
CARMIL3-203ENST00000560349 NCOA2Q15596 1464 aa20.86■□□□□ 0.93
CARMIL3-203ENST00000560349 FGD6Q6ZV73 1430 aa20.85■□□□□ 0.93
CARMIL3-203ENST00000560349 EPRSP07814 1512 aaKnown RBP20.84■□□□□ 0.93
CARMIL3-203ENST00000560349 HECW1Q76N89 1606 aa20.83■□□□□ 0.93
CARMIL3-203ENST00000560349 JPH4Q96JJ6 628 aa20.81■□□□□ 0.92
CARMIL3-203ENST00000560349 EHBP1L1Q8N3D4 1523 aa20.79■□□□□ 0.92
CARMIL3-203ENST00000560349 CCDC18Q5T9S5 1454 aa20.78■□□□□ 0.92
CARMIL3-203ENST00000560349 SETD5Q9C0A6 1442 aa20.78■□□□□ 0.92
CARMIL3-203ENST00000560349 NUP160Q12769 1436 aa20.77■□□□□ 0.92
CARMIL3-203ENST00000560349 PLB1Q6P1J6 1458 aa20.77■□□□□ 0.91
CARMIL3-203ENST00000560349 MYOM3Q5VTT5 1437 aa20.76■□□□□ 0.91
CARMIL3-203ENST00000560349 SUPT6HQ7KZ85 1726 aaKnown RBP20.76■□□□□ 0.91
CARMIL3-203ENST00000560349 NUP153P49790 1475 aaKnown RBP20.75■□□□□ 0.91
CARMIL3-203ENST00000560349 PTPRKQ15262 1439 aa20.75■□□□□ 0.91
CARMIL3-203ENST00000560349 CHIC2Q9UKJ5 165 aa20.72■□□□□ 0.91
CARMIL3-203ENST00000560349 RAPGEF6Q8TEU7 1601 aa20.7■□□□□ 0.9
CARMIL3-203ENST00000560349 DIEXFQ68CQ4 756 aaKnown RBP20.69■□□□□ 0.9
CARMIL3-203ENST00000560349 ZNF316A6NFI3 1004 aaPredicted RBP20.68■□□□□ 0.9
CARMIL3-203ENST00000560349 SCAF1Q9H7N4 1312 aaKnown RBP20.68■□□□□ 0.9
CARMIL3-203ENST00000560349 CARMIL2Q6F5E8 1435 aa20.67■□□□□ 0.9
CARMIL3-203ENST00000560349 ARHGEF11O15085 1522 aa20.67■□□□□ 0.9
CARMIL3-203ENST00000560349 PTPN23Q9H3S7 1636 aa20.66■□□□□ 0.9
CARMIL3-203ENST00000560349 MAPKBP1O60336 1514 aa20.65■□□□□ 0.9
CARMIL3-203ENST00000560349 RRP7BPQ9NSQ0 103 aa20.65■□□□□ 0.9
CARMIL3-203ENST00000560349 PRG4Q92954 1404 aaPredicted RBP20.65■□□□□ 0.9
CARMIL3-203ENST00000560349 CLSPNQ9HAW4 1339 aa20.65■□□□□ 0.9
CARMIL3-203ENST00000560349 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.64■□□□□ 0.9
CARMIL3-203ENST00000560349 SIN3AQ96ST3 1273 aa20.64■□□□□ 0.89
CARMIL3-203ENST00000560349 CHD1O14646 1710 aa20.64■□□□□ 0.89
CARMIL3-203ENST00000560349 ZNF644Q9H582 1327 aaPredicted RBP20.63■□□□□ 0.89
CARMIL3-203ENST00000560349 NEUROD1Q13562 356 aa20.63■□□□□ 0.89
CARMIL3-203ENST00000560349 CDK11AQ9UQ88 783 aaPredicted RBP20.58■□□□□ 0.89
CARMIL3-203ENST00000560349 MYT1Q01538 1121 aa20.57■□□□□ 0.88
CARMIL3-203ENST00000560349 NAIPQ13075 1403 aa20.56■□□□□ 0.88
CARMIL3-203ENST00000560349 ZNF777Q9ULD5 760 aaPredicted RBP20.55■□□□□ 0.88
CARMIL3-203ENST00000560349 HFM1A2PYH4 1435 aa20.55■□□□□ 0.88
CARMIL3-203ENST00000560349 KIF14Q15058 1648 aa20.53■□□□□ 0.88
CARMIL3-203ENST00000560349 TCOF1Q13428 1488 aaKnown RBP20.52■□□□□ 0.88
CARMIL3-203ENST00000560349 TROQ12816 1431 aaPredicted RBP20.52■□□□□ 0.88
CARMIL3-203ENST00000560349 PTPRGP23470 1445 aa20.52■□□□□ 0.88
CARMIL3-203ENST00000560349 ERCC6L2Q5T890 1561 aa20.51■□□□□ 0.87
CARMIL3-203ENST00000560349 MIA2Q96PC5 1412 aa20.49■□□□□ 0.87
CARMIL3-203ENST00000560349 ATP10BO94823 1461 aa20.49■□□□□ 0.87
CARMIL3-203ENST00000560349 ABCA8O94911 1581 aa20.48■□□□□ 0.87
CARMIL3-203ENST00000560349 CFDP1Q9UEE9 299 aaPredicted RBP20.48■□□□□ 0.87
CARMIL3-203ENST00000560349 PLEKHD1A6NEE1 506 aa20.47■□□□□ 0.87
CARMIL3-203ENST00000560349 KDM6BO15054 1643 aa20.46■□□□□ 0.87
CARMIL3-203ENST00000560349 TRIM52Q96A61 297 aa20.46■□□□□ 0.87
CARMIL3-203ENST00000560349 DAPK1P53355 1430 aa20.43■□□□□ 0.86
CARMIL3-203ENST00000560349 UACAQ9BZF9 1416 aa20.42■□□□□ 0.86
CARMIL3-203ENST00000560349 GPATCH8Q9UKJ3 1502 aaKnown RBP20.42■□□□□ 0.86
CARMIL3-203ENST00000560349 ACIN1Q9UKV3 1341 aaKnown RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms