RNA–Protein interactions for RNA: ENST00000560213.1

LRRC28-217, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-217ENST00000560213 RIMBP3CA6NJZ7 1639 aa26.98■■□□□ 1.91
LRRC28-217ENST00000560213 RIMBP3BA6NNM3 1639 aa26.98■■□□□ 1.91
LRRC28-217ENST00000560213 RIMBP3Q9UFD9 1639 aa26.98■■□□□ 1.91
LRRC28-217ENST00000560213 JPH4Q96JJ6 628 aa26.97■■□□□ 1.91
LRRC28-217ENST00000560213 SHROOM2Q13796 1616 aa26.93■■□□□ 1.9
LRRC28-217ENST00000560213 KIF21BO75037 1637 aa26.88■■□□□ 1.89
LRRC28-217ENST00000560213 IQGAP2Q13576 1575 aa26.88■■□□□ 1.89
LRRC28-217ENST00000560213 PRG4Q92954 1404 aaPredicted RBP26.87■■□□□ 1.89
LRRC28-217ENST00000560213 CTTNBP2Q8WZ74 1663 aa26.85■■□□□ 1.89
LRRC28-217ENST00000560213 EHMT2Q96KQ7 1210 aa26.82■■□□□ 1.88
LRRC28-217ENST00000560213 ERCC6L2Q5T890 1561 aa26.82■■□□□ 1.88
LRRC28-217ENST00000560213 CYB5RLQ6IPT4 315 aa26.81■■□□□ 1.88
LRRC28-217ENST00000560213 ARAP1Q96P48 1450 aa26.79■■□□□ 1.88
LRRC28-217ENST00000560213 GOLGA3Q08378 1498 aa26.76■■□□□ 1.87
LRRC28-217ENST00000560213 UBTFP17480 764 aaKnown RBP26.76■■□□□ 1.87
LRRC28-217ENST00000560213 CARMIL2Q6F5E8 1435 aa26.73■■□□□ 1.87
LRRC28-217ENST00000560213 UGGT2Q9NYU1 1516 aa26.72■■□□□ 1.87
LRRC28-217ENST00000560213 DISP1Q96F81 1524 aa26.65■■□□□ 1.86
LRRC28-217ENST00000560213 RANGAP1P46060 587 aaPredicted RBP26.63■■□□□ 1.85
LRRC28-217ENST00000560213 TTBK1Q5TCY1 1321 aaPredicted RBP26.62■■□□□ 1.85
LRRC28-217ENST00000560213 TNIKQ9UKE5 1360 aa26.61■■□□□ 1.85
LRRC28-217ENST00000560213 KIAA0556O60303 1618 aa26.61■■□□□ 1.85
LRRC28-217ENST00000560213 PTPRGP23470 1445 aa26.59■■□□□ 1.85
LRRC28-217ENST00000560213 P3H3Q8IVL6 736 aa26.55■■□□□ 1.84
LRRC28-217ENST00000560213 SAMD9Q5K651 1589 aa26.5■■□□□ 1.83
LRRC28-217ENST00000560213 LOC105371045A0A1W2PR82 267 aa26.45■■□□□ 1.82
LRRC28-217ENST00000560213 EFCAB5A4FU69 1503 aa26.44■■□□□ 1.82
LRRC28-217ENST00000560213 UACAQ9BZF9 1416 aa26.4■■□□□ 1.82
LRRC28-217ENST00000560213 NPM1P06748 294 aaKnown RBP eCLIP26.4■■□□□ 1.82
LRRC28-217ENST00000560213 ADCY10Q96PN6 1610 aa26.39■■□□□ 1.81
LRRC28-217ENST00000560213 FHOD3Q2V2M9 1422 aa26.39■■□□□ 1.81
LRRC28-217ENST00000560213 UHRF1BP1LA0JNW5 1464 aa26.35■■□□□ 1.81
LRRC28-217ENST00000560213 ARHGAP35Q9NRY4 1499 aa26.35■■□□□ 1.81
LRRC28-217ENST00000560213 PLB1Q6P1J6 1458 aa26.33■■□□□ 1.81
LRRC28-217ENST00000560213 ABCC2Q92887 1545 aa26.33■■□□□ 1.81
LRRC28-217ENST00000560213 CLIP1P30622 1438 aa26.31■■□□□ 1.8
LRRC28-217ENST00000560213 ABCA8O94911 1581 aa26.3■■□□□ 1.8
LRRC28-217ENST00000560213 RAPGEF6Q8TEU7 1601 aa26.23■■□□□ 1.79
LRRC28-217ENST00000560213 CEP162Q5TB80 1403 aa26.22■■□□□ 1.79
LRRC28-217ENST00000560213 FMN1Q68DA7 1419 aa26.22■■□□□ 1.79
LRRC28-217ENST00000560213 TRHP20396 242 aaPredicted RBP26.22■■□□□ 1.79
LRRC28-217ENST00000560213 KDM5BQ9UGL1 1544 aa26.21■■□□□ 1.79
LRRC28-217ENST00000560213 ARID3CA6NKF2 412 aa26.17■■□□□ 1.78
LRRC28-217ENST00000560213 MAPKBP1O60336 1514 aa26.17■■□□□ 1.78
LRRC28-217ENST00000560213 ZCCHC11Q5TAX3 1644 aaKnown RBP26.17■■□□□ 1.78
LRRC28-217ENST00000560213 ATP1B4Q9UN42 357 aaPredicted RBP26.14■■□□□ 1.78
LRRC28-217ENST00000560213 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.12■■□□□ 1.77
LRRC28-217ENST00000560213 HNRNPUL2Q1KMD3 747 aaKnown RBP26.12■■□□□ 1.77
LRRC28-217ENST00000560213 ATP10BO94823 1461 aa26.11■■□□□ 1.77
LRRC28-217ENST00000560213 NUP153P49790 1475 aaKnown RBP26.11■■□□□ 1.77
LRRC28-217ENST00000560213 ASXL2Q76L83 1435 aa26.11■■□□□ 1.77
LRRC28-217ENST00000560213 HECW1Q76N89 1606 aa26.05■■□□□ 1.76
LRRC28-217ENST00000560213 FAM69CQ0P6D2 419 aa26.04■■□□□ 1.76
LRRC28-217ENST00000560213 ABCC10Q5T3U5 1492 aa26.04■■□□□ 1.76
LRRC28-217ENST00000560213 CASKIN1Q8WXD9 1431 aa26.03■■□□□ 1.76
LRRC28-217ENST00000560213 PCF11O94913 1555 aaKnown RBP26■■□□□ 1.75
LRRC28-217ENST00000560213 WDR7Q9Y4E6 1490 aa26■■□□□ 1.75
LRRC28-217ENST00000560213 KIF13AQ9H1H9 1805 aa26■■□□□ 1.75
LRRC28-217ENST00000560213 DIP2BQ9P265 1576 aa25.99■■□□□ 1.75
LRRC28-217ENST00000560213 EPRSP07814 1512 aaKnown RBP25.98■■□□□ 1.75
LRRC28-217ENST00000560213 KCNH8Q96L42 1107 aa25.98■■□□□ 1.75
LRRC28-217ENST00000560213 PLEKHD1A6NEE1 506 aa25.97■■□□□ 1.75
LRRC28-217ENST00000560213 FYCO1Q9BQS8 1478 aa25.97■■□□□ 1.75
LRRC28-217ENST00000560213 CDK13Q14004 1512 aaKnown RBP25.96■■□□□ 1.75
LRRC28-217ENST00000560213 CDK11AQ9UQ88 783 aaPredicted RBP25.93■■□□□ 1.74
LRRC28-217ENST00000560213 LRRIQ1Q96JM4 1722 aa25.92■■□□□ 1.74
LRRC28-217ENST00000560213 CCDC18Q5T9S5 1454 aa25.91■■□□□ 1.74
LRRC28-217ENST00000560213 GLI2P10070 1586 aa25.9■■□□□ 1.74
LRRC28-217ENST00000560213 VPS8Q8N3P4 1428 aa25.89■■□□□ 1.74
LRRC28-217ENST00000560213 TSPOAP1O95153 1857 aa25.83■■□□□ 1.73
LRRC28-217ENST00000560213 MAP3K4Q9Y6R4 1608 aa25.79■■□□□ 1.72
LRRC28-217ENST00000560213 TROQ12816 1431 aaPredicted RBP25.78■■□□□ 1.72
LRRC28-217ENST00000560213 CFAP43Q8NDM7 1665 aa25.77■■□□□ 1.72
LRRC28-217ENST00000560213 CD109Q6YHK3 1445 aa25.77■■□□□ 1.72
LRRC28-217ENST00000560213 ABCA9Q8IUA7 1624 aa25.74■■□□□ 1.71
LRRC28-217ENST00000560213 APLP2Q06481 763 aa25.71■■□□□ 1.71
LRRC28-217ENST00000560213 MAGI3Q5TCQ9 1506 aa25.71■■□□□ 1.71
LRRC28-217ENST00000560213 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.7■■□□□ 1.7
LRRC28-217ENST00000560213 PPRC1Q5VV67 1664 aaKnown RBP25.7■■□□□ 1.7
LRRC28-217ENST00000560213 KIF14Q15058 1648 aa25.7■■□□□ 1.7
LRRC28-217ENST00000560213 MTUS2Q5JR59 1369 aa25.69■■□□□ 1.7
LRRC28-217ENST00000560213 TEX14Q8IWB6 1497 aa25.68■■□□□ 1.7
LRRC28-217ENST00000560213 TIAM1Q13009 1591 aa25.67■■□□□ 1.7
LRRC28-217ENST00000560213 TTC37Q6PGP7 1564 aa25.65■■□□□ 1.7
LRRC28-217ENST00000560213 MAP3K1Q13233 1512 aa25.63■■□□□ 1.69
LRRC28-217ENST00000560213 EHBP1L1Q8N3D4 1523 aa25.61■■□□□ 1.69
LRRC28-217ENST00000560213 MYO5CQ9NQX4 1742 aa25.57■■□□□ 1.68
LRRC28-217ENST00000560213 PLCH2O75038 1416 aa25.57■■□□□ 1.68
LRRC28-217ENST00000560213 LRRC9Q6ZRR7 1453 aa25.56■■□□□ 1.68
LRRC28-217ENST00000560213 KANK4Q5T7N3 995 aaPredicted RBP25.55■■□□□ 1.68
LRRC28-217ENST00000560213 KDM6BO15054 1643 aa25.54■■□□□ 1.68
LRRC28-217ENST00000560213 PHLDB1Q86UU1 1377 aa25.53■■□□□ 1.68
LRRC28-217ENST00000560213 NEO1Q92859 1461 aa25.53■■□□□ 1.68
LRRC28-217ENST00000560213 EFCAB2Q5VUJ9 269 aa25.52■■□□□ 1.68
LRRC28-217ENST00000560213 FANCAO15360 1455 aa25.52■■□□□ 1.68
LRRC28-217ENST00000560213 SUPT6HQ7KZ85 1726 aaKnown RBP25.51■■□□□ 1.68
LRRC28-217ENST00000560213 CCNB3Q8WWL7 1395 aa25.51■■□□□ 1.67
LRRC28-217ENST00000560213 ARAP3Q8WWN8 1544 aa25.5■■□□□ 1.67
LRRC28-217ENST00000560213 CFAP74Q9C0B2 1584 aa25.49■■□□□ 1.67
LRRC28-217ENST00000560213 ARHGAP5Q13017 1502 aa25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms