RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 TTBK1Q5TCY1 1321 aaPredicted RBP14.24□□□□□ -0.13
USP3-217ENST00000560070 ARHGEF11O15085 1522 aa14.23□□□□□ -0.13
USP3-217ENST00000560070 NUP160Q12769 1436 aa14.23□□□□□ -0.13
USP3-217ENST00000560070 CLASP1Q7Z460 1538 aa14.2□□□□□ -0.14
USP3-217ENST00000560070 CEP170Q5SW79 1584 aa14.19□□□□□ -0.14
USP3-217ENST00000560070 RAPGEF2Q9Y4G8 1499 aa14.18□□□□□ -0.14
USP3-217ENST00000560070 PRG4Q92954 1404 aaPredicted RBP14.17□□□□□ -0.14
USP3-217ENST00000560070 RIMBP3CA6NJZ7 1639 aa14.17□□□□□ -0.14
USP3-217ENST00000560070 RIMBP3BA6NNM3 1639 aa14.17□□□□□ -0.14
USP3-217ENST00000560070 RIMBP3Q9UFD9 1639 aa14.17□□□□□ -0.14
USP3-217ENST00000560070 RANGAP1P46060 587 aaPredicted RBP14.17□□□□□ -0.14
USP3-217ENST00000560070 ARAP1Q96P48 1450 aa14.14□□□□□ -0.15
USP3-217ENST00000560070 KIAA0586Q9BVV6 1533 aa14.14□□□□□ -0.15
USP3-217ENST00000560070 ERCC6L2Q5T890 1561 aa14.11□□□□□ -0.15
USP3-217ENST00000560070 PRXQ9BXM0 1461 aa14.11□□□□□ -0.15
USP3-217ENST00000560070 CUL7Q14999 1698 aa14.1□□□□□ -0.15
USP3-217ENST00000560070 P3H3Q8IVL6 736 aa14.1□□□□□ -0.15
USP3-217ENST00000560070 EEA1Q15075 1411 aa14.09□□□□□ -0.15
USP3-217ENST00000560070 UBTFP17480 764 aaKnown RBP14.09□□□□□ -0.15
USP3-217ENST00000560070 TRHP20396 242 aaPredicted RBP14.08□□□□□ -0.16
USP3-217ENST00000560070 PTPRGP23470 1445 aa14.03□□□□□ -0.16
USP3-217ENST00000560070 CARMIL2Q6F5E8 1435 aa14.03□□□□□ -0.16
USP3-217ENST00000560070 NPM1P06748 294 aaKnown RBP eCLIP14.02□□□□□ -0.17
USP3-217ENST00000560070 TNIKQ9UKE5 1360 aa14□□□□□ -0.17
USP3-217ENST00000560070 SHROOM2Q13796 1616 aa13.98□□□□□ -0.17
USP3-217ENST00000560070 IQGAP2Q13576 1575 aa13.97□□□□□ -0.17
USP3-217ENST00000560070 ARID3CA6NKF2 412 aa13.95□□□□□ -0.18
USP3-217ENST00000560070 DISP1Q96F81 1524 aa13.95□□□□□ -0.18
USP3-217ENST00000560070 LOC105371045A0A1W2PR82 267 aa13.93□□□□□ -0.18
USP3-217ENST00000560070 UGGT2Q9NYU1 1516 aa13.92□□□□□ -0.18
USP3-217ENST00000560070 PIAS4Q8N2W9 510 aaPredicted RBP13.9□□□□□ -0.18
USP3-217ENST00000560070 GOLGA3Q08378 1498 aa13.9□□□□□ -0.18
USP3-217ENST00000560070 ATP1B4Q9UN42 357 aaPredicted RBP13.89□□□□□ -0.19
USP3-217ENST00000560070 UACAQ9BZF9 1416 aa13.89□□□□□ -0.19
USP3-217ENST00000560070 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.87□□□□□ -0.19
USP3-217ENST00000560070 FAM69CQ0P6D2 419 aa13.87□□□□□ -0.19
USP3-217ENST00000560070 HNRNPUL2Q1KMD3 747 aaKnown RBP13.87□□□□□ -0.19
USP3-217ENST00000560070 FHOD3Q2V2M9 1422 aa13.84□□□□□ -0.19
USP3-217ENST00000560070 KIF21BO75037 1637 aa13.84□□□□□ -0.19
USP3-217ENST00000560070 PLB1Q6P1J6 1458 aa13.84□□□□□ -0.19
USP3-217ENST00000560070 KCNH8Q96L42 1107 aa13.83□□□□□ -0.2
USP3-217ENST00000560070 KIAA0556O60303 1618 aa13.82□□□□□ -0.2
USP3-217ENST00000560070 ADCY10Q96PN6 1610 aa13.79□□□□□ -0.2
USP3-217ENST00000560070 ABCC2Q92887 1545 aa13.78□□□□□ -0.2
USP3-217ENST00000560070 CTTNBP2Q8WZ74 1663 aa13.78□□□□□ -0.2
USP3-217ENST00000560070 UHRF1BP1LA0JNW5 1464 aa13.77□□□□□ -0.21
USP3-217ENST00000560070 ASXL2Q76L83 1435 aa13.76□□□□□ -0.21
USP3-217ENST00000560070 ARHGAP35Q9NRY4 1499 aa13.74□□□□□ -0.21
USP3-217ENST00000560070 PLEKHD1A6NEE1 506 aa13.72□□□□□ -0.21
USP3-217ENST00000560070 ATP10BO94823 1461 aa13.72□□□□□ -0.21
USP3-217ENST00000560070 CLIP1P30622 1438 aa13.72□□□□□ -0.21
USP3-217ENST00000560070 KDM5BQ9UGL1 1544 aa13.71□□□□□ -0.21
USP3-217ENST00000560070 ABCC10Q5T3U5 1492 aa13.71□□□□□ -0.21
USP3-217ENST00000560070 ABCA8O94911 1581 aa13.71□□□□□ -0.22
USP3-217ENST00000560070 SAMD9Q5K651 1589 aa13.71□□□□□ -0.22
USP3-217ENST00000560070 EFCAB5A4FU69 1503 aa13.67□□□□□ -0.22
USP3-217ENST00000560070 MAPKBP1O60336 1514 aa13.67□□□□□ -0.22
USP3-217ENST00000560070 FMN1Q68DA7 1419 aa13.66□□□□□ -0.22
USP3-217ENST00000560070 NUP153P49790 1475 aaKnown RBP13.65□□□□□ -0.22
USP3-217ENST00000560070 CEP162Q5TB80 1403 aa13.64□□□□□ -0.23
USP3-217ENST00000560070 EPRSP07814 1512 aaKnown RBP13.64□□□□□ -0.23
USP3-217ENST00000560070 WDR7Q9Y4E6 1490 aa13.63□□□□□ -0.23
USP3-217ENST00000560070 CDK11AQ9UQ88 783 aaPredicted RBP13.63□□□□□ -0.23
USP3-217ENST00000560070 ZCCHC11Q5TAX3 1644 aaKnown RBP13.62□□□□□ -0.23
USP3-217ENST00000560070 RAPGEF6Q8TEU7 1601 aa13.61□□□□□ -0.23
USP3-217ENST00000560070 CD109Q6YHK3 1445 aa13.6□□□□□ -0.23
USP3-217ENST00000560070 CDK13Q14004 1512 aaKnown RBP13.59□□□□□ -0.23
USP3-217ENST00000560070 DIP2BQ9P265 1576 aa13.58□□□□□ -0.23
USP3-217ENST00000560070 CASKIN1Q8WXD9 1431 aa13.56□□□□□ -0.24
USP3-217ENST00000560070 PPP6R1Q9UPN7 881 aa13.54□□□□□ -0.24
USP3-217ENST00000560070 GLI2P10070 1586 aa13.52□□□□□ -0.25
USP3-217ENST00000560070 RAPGEF3O95398 923 aa13.49□□□□□ -0.25
USP3-217ENST00000560070 HECW1Q76N89 1606 aa13.49□□□□□ -0.25
USP3-217ENST00000560070 KIF13AQ9H1H9 1805 aa13.48□□□□□ -0.25
USP3-217ENST00000560070 APLP2Q06481 763 aa13.48□□□□□ -0.25
USP3-217ENST00000560070 COL17A1Q9UMD9 1497 aaPredicted RBP13.48□□□□□ -0.25
USP3-217ENST00000560070 TROQ12816 1431 aaPredicted RBP13.47□□□□□ -0.25
USP3-217ENST00000560070 PCF11O94913 1555 aaKnown RBP13.47□□□□□ -0.25
USP3-217ENST00000560070 EFCAB2Q5VUJ9 269 aa13.47□□□□□ -0.25
USP3-217ENST00000560070 ZNF777Q9ULD5 760 aaPredicted RBP13.47□□□□□ -0.25
USP3-217ENST00000560070 TEX14Q8IWB6 1497 aa13.47□□□□□ -0.25
USP3-217ENST00000560070 FYCO1Q9BQS8 1478 aa13.47□□□□□ -0.25
USP3-217ENST00000560070 MTUS2Q5JR59 1369 aa13.46□□□□□ -0.25
USP3-217ENST00000560070 MAGI3Q5TCQ9 1506 aa13.45□□□□□ -0.26
USP3-217ENST00000560070 TSPOAP1O95153 1857 aa13.45□□□□□ -0.26
USP3-217ENST00000560070 KANK4Q5T7N3 995 aaPredicted RBP13.45□□□□□ -0.26
USP3-217ENST00000560070 VPS8Q8N3P4 1428 aa13.45□□□□□ -0.26
USP3-217ENST00000560070 CCDC18Q5T9S5 1454 aa13.44□□□□□ -0.26
USP3-217ENST00000560070 ADRA2BP18089 450 aa13.43□□□□□ -0.26
USP3-217ENST00000560070 MYT1LQ9UL68 1186 aa13.43□□□□□ -0.26
USP3-217ENST00000560070 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.43□□□□□ -0.262e-7■■■□□ 16.1
USP3-217ENST00000560070 PLCH2O75038 1416 aa13.42□□□□□ -0.26
USP3-217ENST00000560070 AKNAQ7Z591 1439 aa13.41□□□□□ -0.26
USP3-217ENST00000560070 PPARGC1BQ86YN6 1023 aaKnown RBP13.41□□□□□ -0.26
USP3-217ENST00000560070 MAP3K4Q9Y6R4 1608 aa13.41□□□□□ -0.26
USP3-217ENST00000560070 CFDP1Q9UEE9 299 aaPredicted RBP13.4□□□□□ -0.26
USP3-217ENST00000560070 KDM6BO15054 1643 aa13.39□□□□□ -0.27
USP3-217ENST00000560070 AFAP1Q8N556 730 aa13.39□□□□□ -0.27
USP3-217ENST00000560070 PHLDB1Q86UU1 1377 aa13.39□□□□□ -0.27
USP3-217ENST00000560070 CCNB3Q8WWL7 1395 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms