RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 CTTNBP2Q8WZ74 1663 aa28.19■■■□□ 2.1
SNX1-208ENST00000559844 UBTFP17480 764 aaKnown RBP28.13■■■□□ 2.09
SNX1-208ENST00000559844 CLASP1Q7Z460 1538 aa28.13■■■□□ 2.09
SNX1-208ENST00000559844 TNIKQ9UKE5 1360 aa28.11■■■□□ 2.09
SNX1-208ENST00000559844 KIAA0586Q9BVV6 1533 aa28.1■■■□□ 2.09
SNX1-208ENST00000559844 PCGF6Q9BYE7 350 aa28.08■■■□□ 2.09
SNX1-208ENST00000559844 IQGAP2Q13576 1575 aa28.07■■■□□ 2.08
SNX1-208ENST00000559844 TRIM26Q12899 539 aaPredicted RBP28.02■■■□□ 2.08
SNX1-208ENST00000559844 SHROOM2Q13796 1616 aa27.98■■■□□ 2.07
SNX1-208ENST00000559844 CEP162Q5TB80 1403 aa27.97■■■□□ 2.07
SNX1-208ENST00000559844 JPH4Q96JJ6 628 aa27.95■■■□□ 2.06
SNX1-208ENST00000559844 RANGAP1P46060 587 aaPredicted RBP27.92■■■□□ 2.06
SNX1-208ENST00000559844 UGGT2Q9NYU1 1516 aa27.9■■■□□ 2.06
SNX1-208ENST00000559844 PRG4Q92954 1404 aaPredicted RBP27.87■■■□□ 2.05
SNX1-208ENST00000559844 ERCC6L2Q5T890 1561 aa27.83■■■□□ 2.05
SNX1-208ENST00000559844 DISP1Q96F81 1524 aa27.81■■■□□ 2.04
SNX1-208ENST00000559844 KIAA0556O60303 1618 aa27.8■■■□□ 2.04
SNX1-208ENST00000559844 SAMD9Q5K651 1589 aa27.8■■■□□ 2.04
SNX1-208ENST00000559844 ARHGEF11O15085 1522 aa27.79■■■□□ 2.04
SNX1-208ENST00000559844 CARMIL2Q6F5E8 1435 aa27.79■■■□□ 2.04
SNX1-208ENST00000559844 EFCAB5A4FU69 1503 aa27.77■■■□□ 2.04
SNX1-208ENST00000559844 RIMBP3CA6NJZ7 1639 aa27.75■■■□□ 2.03
SNX1-208ENST00000559844 RIMBP3BA6NNM3 1639 aa27.75■■■□□ 2.03
SNX1-208ENST00000559844 RIMBP3Q9UFD9 1639 aa27.75■■■□□ 2.03
SNX1-208ENST00000559844 CLIP1P30622 1438 aa27.75■■■□□ 2.03
SNX1-208ENST00000559844 P3H3Q8IVL6 736 aa27.73■■■□□ 2.03
SNX1-208ENST00000559844 ARHGAP35Q9NRY4 1499 aa27.72■■■□□ 2.03
SNX1-208ENST00000559844 DNAJC5Q9H3Z4 198 aa27.72■■■□□ 2.03
SNX1-208ENST00000559844 HRCP23327 699 aa27.69■■■□□ 2.02
SNX1-208ENST00000559844 FHOD3Q2V2M9 1422 aa27.67■■■□□ 2.02
SNX1-208ENST00000559844 TTBK1Q5TCY1 1321 aaPredicted RBP27.65■■■□□ 2.02
SNX1-208ENST00000559844 ARAP1Q96P48 1450 aa27.61■■■□□ 2.01
SNX1-208ENST00000559844 PTPRGP23470 1445 aa27.59■■■□□ 2.01
SNX1-208ENST00000559844 CYB5RLQ6IPT4 315 aa27.49■■□□□ 1.99
SNX1-208ENST00000559844 FMN1Q68DA7 1419 aa27.49■■□□□ 1.99
SNX1-208ENST00000559844 VPS8Q8N3P4 1428 aa27.49■■□□□ 1.99
SNX1-208ENST00000559844 PPARGC1BQ86YN6 1023 aaKnown RBP27.48■■□□□ 1.99
SNX1-208ENST00000559844 PLB1Q6P1J6 1458 aa27.47■■□□□ 1.99
SNX1-208ENST00000559844 ABCA8O94911 1581 aa27.44■■□□□ 1.98
SNX1-208ENST00000559844 RAPGEF6Q8TEU7 1601 aa27.43■■□□□ 1.98
SNX1-208ENST00000559844 UACAQ9BZF9 1416 aa27.43■■□□□ 1.98
SNX1-208ENST00000559844 PCF11O94913 1555 aaKnown RBP27.41■■□□□ 1.98
SNX1-208ENST00000559844 ADCY10Q96PN6 1610 aa27.4■■□□□ 1.98
SNX1-208ENST00000559844 ABCC2Q92887 1545 aa27.39■■□□□ 1.97
SNX1-208ENST00000559844 UHRF1BP1LA0JNW5 1464 aa27.35■■□□□ 1.97
SNX1-208ENST00000559844 HECW1Q76N89 1606 aa27.34■■□□□ 1.97
SNX1-208ENST00000559844 CASKIN1Q8WXD9 1431 aa27.34■■□□□ 1.97
SNX1-208ENST00000559844 ATP1B4Q9UN42 357 aaPredicted RBP27.33■■□□□ 1.97
SNX1-208ENST00000559844 FYCO1Q9BQS8 1478 aa27.33■■□□□ 1.97
SNX1-208ENST00000559844 NUP153P49790 1475 aaKnown RBP27.32■■□□□ 1.96
SNX1-208ENST00000559844 LRRIQ1Q96JM4 1722 aa27.29■■□□□ 1.96
SNX1-208ENST00000559844 ARID3CA6NKF2 412 aa27.29■■□□□ 1.96
SNX1-208ENST00000559844 APLP2Q06481 763 aa27.28■■□□□ 1.96
SNX1-208ENST00000559844 ZCCHC11Q5TAX3 1644 aaKnown RBP27.25■■□□□ 1.95
SNX1-208ENST00000559844 KDM5BQ9UGL1 1544 aa27.24■■□□□ 1.95
SNX1-208ENST00000559844 EPRSP07814 1512 aaKnown RBP27.22■■□□□ 1.95
SNX1-208ENST00000559844 CDK13Q14004 1512 aaKnown RBP27.21■■□□□ 1.95
SNX1-208ENST00000559844 ATP10BO94823 1461 aa27.2■■□□□ 1.95
SNX1-208ENST00000559844 NPM1P06748 294 aaKnown RBP eCLIP27.2■■□□□ 1.94
SNX1-208ENST00000559844 ZEB1P37275 1124 aaPredicted RBP27.2■■□□□ 1.94
SNX1-208ENST00000559844 CCDC18Q5T9S5 1454 aa27.18■■□□□ 1.94
SNX1-208ENST00000559844 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.18■■□□□ 1.94
SNX1-208ENST00000559844 HNRNPUL2Q1KMD3 747 aaKnown RBP27.18■■□□□ 1.94
SNX1-208ENST00000559844 CFAP43Q8NDM7 1665 aa27.13■■□□□ 1.93
SNX1-208ENST00000559844 TIAM1Q13009 1591 aa27.1■■□□□ 1.93
SNX1-208ENST00000559844 MAPKBP1O60336 1514 aa27.08■■□□□ 1.93
SNX1-208ENST00000559844 ASXL2Q76L83 1435 aa27.06■■□□□ 1.92
SNX1-208ENST00000559844 MAP3K1Q13233 1512 aa27.05■■□□□ 1.92
SNX1-208ENST00000559844 CDK11AQ9UQ88 783 aaPredicted RBP27.04■■□□□ 1.92
SNX1-208ENST00000559844 PLEKHD1A6NEE1 506 aa27.02■■□□□ 1.92
SNX1-208ENST00000559844 WDR7Q9Y4E6 1490 aa27.01■■□□□ 1.92
SNX1-208ENST00000559844 MAGI3Q5TCQ9 1506 aa27.01■■□□□ 1.92
SNX1-208ENST00000559844 MTUS2Q5JR59 1369 aa26.97■■□□□ 1.91
SNX1-208ENST00000559844 TROQ12816 1431 aaPredicted RBP26.96■■□□□ 1.91
SNX1-208ENST00000559844 LRRC9Q6ZRR7 1453 aa26.95■■□□□ 1.91
SNX1-208ENST00000559844 EHBP1L1Q8N3D4 1523 aa26.94■■□□□ 1.9
SNX1-208ENST00000559844 KANK4Q5T7N3 995 aaPredicted RBP26.94■■□□□ 1.9
SNX1-208ENST00000559844 KCNH8Q96L42 1107 aa26.93■■□□□ 1.9
SNX1-208ENST00000559844 KIF14Q15058 1648 aa26.91■■□□□ 1.9
SNX1-208ENST00000559844 DIP2BQ9P265 1576 aa26.88■■□□□ 1.89
SNX1-208ENST00000559844 ABCC10Q5T3U5 1492 aa26.87■■□□□ 1.89
SNX1-208ENST00000559844 SUPT6HQ7KZ85 1726 aaKnown RBP26.86■■□□□ 1.89
SNX1-208ENST00000559844 KIF13AQ9H1H9 1805 aa26.86■■□□□ 1.89
SNX1-208ENST00000559844 CCER1Q8TC90 406 aaPredicted RBP26.83■■□□□ 1.89
SNX1-208ENST00000559844 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.83■■□□□ 1.88
SNX1-208ENST00000559844 TTC37Q6PGP7 1564 aa26.82■■□□□ 1.88
SNX1-208ENST00000559844 ABCA9Q8IUA7 1624 aa26.81■■□□□ 1.88
SNX1-208ENST00000559844 GLI2P10070 1586 aa26.8■■□□□ 1.88
SNX1-208ENST00000559844 FAM69CQ0P6D2 419 aa26.8■■□□□ 1.88
SNX1-208ENST00000559844 NCOA2Q15596 1464 aa26.79■■□□□ 1.88
SNX1-208ENST00000559844 TRHP20396 242 aaPredicted RBP26.76■■□□□ 1.87
SNX1-208ENST00000559844 MAP3K4Q9Y6R4 1608 aa26.75■■□□□ 1.87
SNX1-208ENST00000559844 RRBP1Q9P2E9 1410 aaKnown RBP26.75■■□□□ 1.87
SNX1-208ENST00000559844 MYO5CQ9NQX4 1742 aa26.74■■□□□ 1.87
SNX1-208ENST00000559844 CDC42BPAQ5VT25 1732 aa26.73■■□□□ 1.87
SNX1-208ENST00000559844 TSPOAP1O95153 1857 aa26.73■■□□□ 1.87
SNX1-208ENST00000559844 CCNB3Q8WWL7 1395 aa26.7■■□□□ 1.86
SNX1-208ENST00000559844 CD109Q6YHK3 1445 aa26.7■■□□□ 1.86
SNX1-208ENST00000559844 ITSN2Q9NZM3 1697 aa26.68■■□□□ 1.86
SNX1-208ENST00000559844 PREX2Q70Z35 1606 aa26.68■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms