RNA–Protein interactions for RNA: ENST00000559658.5

CHRNA3-206, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 1,889 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-206ENST00000559658 CHD1O14646 1710 aa27.71■■■□□ 2.03
CHRNA3-206ENST00000559658 FBLN2P98095 1184 aa27.69■■■□□ 2.02
CHRNA3-206ENST00000559658 CEP170Q5SW79 1584 aa27.68■■■□□ 2.02
CHRNA3-206ENST00000559658 CHMP7Q8WUX9 453 aaPredicted RBP27.66■■■□□ 2.02
CHRNA3-206ENST00000559658 ARHGAP35Q9NRY4 1499 aa27.65■■■□□ 2.02
CHRNA3-206ENST00000559658 ARAP1Q96P48 1450 aa27.63■■■□□ 2.01
CHRNA3-206ENST00000559658 IQGAP2Q13576 1575 aa27.61■■■□□ 2.01
CHRNA3-206ENST00000559658 NUP160Q12769 1436 aa27.57■■■□□ 2
CHRNA3-206ENST00000559658 KIAA0586Q9BVV6 1533 aa27.53■■■□□ 2
CHRNA3-206ENST00000559658 SAMD9Q5K651 1589 aa27.52■■■□□ 2
CHRNA3-206ENST00000559658 P3H3Q8IVL6 736 aa27.49■■□□□ 1.99
CHRNA3-206ENST00000559658 EFCAB5A4FU69 1503 aa27.49■■□□□ 1.99
CHRNA3-206ENST00000559658 FHOD3Q2V2M9 1422 aa27.48■■□□□ 1.99
CHRNA3-206ENST00000559658 VPS8Q8N3P4 1428 aa27.48■■□□□ 1.99
CHRNA3-206ENST00000559658 UGGT2Q9NYU1 1516 aa27.44■■□□□ 1.98
CHRNA3-206ENST00000559658 DISP1Q96F81 1524 aa27.39■■□□□ 1.97
CHRNA3-206ENST00000559658 KIAA0556O60303 1618 aa27.37■■□□□ 1.97
CHRNA3-206ENST00000559658 PCF11O94913 1555 aaKnown RBP27.33■■□□□ 1.97
CHRNA3-206ENST00000559658 PPARGC1BQ86YN6 1023 aaKnown RBP27.33■■□□□ 1.97
CHRNA3-206ENST00000559658 CLASP1Q7Z460 1538 aa27.33■■□□□ 1.97
CHRNA3-206ENST00000559658 SHROOM2Q13796 1616 aa27.29■■□□□ 1.96
CHRNA3-206ENST00000559658 JPH4Q96JJ6 628 aa27.28■■□□□ 1.96
CHRNA3-206ENST00000559658 ERCC6L2Q5T890 1561 aa27.23■■□□□ 1.95
CHRNA3-206ENST00000559658 PRG4Q92954 1404 aaPredicted RBP27.2■■□□□ 1.95
CHRNA3-206ENST00000559658 TTBK1Q5TCY1 1321 aaPredicted RBP27.19■■□□□ 1.94
CHRNA3-206ENST00000559658 LRRIQ1Q96JM4 1722 aa27.19■■□□□ 1.94
CHRNA3-206ENST00000559658 FMN1Q68DA7 1419 aa27.19■■□□□ 1.94
CHRNA3-206ENST00000559658 FYCO1Q9BQS8 1478 aa27.16■■□□□ 1.94
CHRNA3-206ENST00000559658 CASKIN1Q8WXD9 1431 aa27.15■■□□□ 1.94
CHRNA3-206ENST00000559658 CARMIL2Q6F5E8 1435 aa27.14■■□□□ 1.93
CHRNA3-206ENST00000559658 CFAP43Q8NDM7 1665 aa27.1■■□□□ 1.93
CHRNA3-206ENST00000559658 TIAM1Q13009 1591 aa27.09■■□□□ 1.93
CHRNA3-206ENST00000559658 ATP1B4Q9UN42 357 aaPredicted RBP27.09■■□□□ 1.93
CHRNA3-206ENST00000559658 KANK4Q5T7N3 995 aaPredicted RBP27.05■■□□□ 1.92
CHRNA3-206ENST00000559658 PLB1Q6P1J6 1458 aa27.05■■□□□ 1.92
CHRNA3-206ENST00000559658 OSCARQ8IYS5 282 aa27.05■■□□□ 1.92
CHRNA3-206ENST00000559658 RAPGEF6Q8TEU7 1601 aa27.04■■□□□ 1.92
CHRNA3-206ENST00000559658 HECW1Q76N89 1606 aa27.03■■□□□ 1.92
CHRNA3-206ENST00000559658 APLP2Q06481 763 aa27.03■■□□□ 1.92
CHRNA3-206ENST00000559658 CDK13Q14004 1512 aaKnown RBP26.99■■□□□ 1.91
CHRNA3-206ENST00000559658 NUP153P49790 1475 aaKnown RBP26.99■■□□□ 1.91
CHRNA3-206ENST00000559658 ARID3CA6NKF2 412 aa26.98■■□□□ 1.91
CHRNA3-206ENST00000559658 MAP3K1Q13233 1512 aa26.98■■□□□ 1.91
CHRNA3-206ENST00000559658 ABCA8O94911 1581 aa26.97■■□□□ 1.91
CHRNA3-206ENST00000559658 EPRSP07814 1512 aaKnown RBP26.95■■□□□ 1.9
CHRNA3-206ENST00000559658 PTPRGP23470 1445 aa26.95■■□□□ 1.9
CHRNA3-206ENST00000559658 LRRC9Q6ZRR7 1453 aa26.93■■□□□ 1.9
CHRNA3-206ENST00000559658 MAGI3Q5TCQ9 1506 aa26.91■■□□□ 1.9
CHRNA3-206ENST00000559658 CCDC18Q5T9S5 1454 aa26.88■■□□□ 1.89
CHRNA3-206ENST00000559658 PCGF6Q9BYE7 350 aa26.86■■□□□ 1.89
CHRNA3-206ENST00000559658 TRIM26Q12899 539 aaPredicted RBP26.85■■□□□ 1.89
CHRNA3-206ENST00000559658 UACAQ9BZF9 1416 aa26.81■■□□□ 1.88
CHRNA3-206ENST00000559658 ABCC2Q92887 1545 aa26.78■■□□□ 1.88
CHRNA3-206ENST00000559658 ARHGEF11O15085 1522 aa26.77■■□□□ 1.88
CHRNA3-206ENST00000559658 EHBP1L1Q8N3D4 1523 aa26.77■■□□□ 1.88
CHRNA3-206ENST00000559658 MTUS2Q5JR59 1369 aa26.76■■□□□ 1.87
CHRNA3-206ENST00000559658 ATP10BO94823 1461 aa26.76■■□□□ 1.87
CHRNA3-206ENST00000559658 ADCY10Q96PN6 1610 aa26.74■■□□□ 1.87
CHRNA3-206ENST00000559658 PHLDB1Q86UU1 1377 aa26.72■■□□□ 1.87
CHRNA3-206ENST00000559658 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.71■■□□□ 1.87
CHRNA3-206ENST00000559658 HNRNPUL2Q1KMD3 747 aaKnown RBP26.71■■□□□ 1.87
CHRNA3-206ENST00000559658 SUPT6HQ7KZ85 1726 aaKnown RBP26.69■■□□□ 1.86
CHRNA3-206ENST00000559658 RIMBP3CA6NJZ7 1639 aa26.68■■□□□ 1.86
CHRNA3-206ENST00000559658 RIMBP3BA6NNM3 1639 aa26.68■■□□□ 1.86
CHRNA3-206ENST00000559658 RIMBP3Q9UFD9 1639 aa26.68■■□□□ 1.86
CHRNA3-206ENST00000559658 NCOA2Q15596 1464 aa26.67■■□□□ 1.86
CHRNA3-206ENST00000559658 ZCCHC11Q5TAX3 1644 aaKnown RBP26.67■■□□□ 1.86
CHRNA3-206ENST00000559658 UHRF1BP1LA0JNW5 1464 aa26.67■■□□□ 1.86
CHRNA3-206ENST00000559658 KIF14Q15058 1648 aa26.65■■□□□ 1.86
CHRNA3-206ENST00000559658 TROQ12816 1431 aaPredicted RBP26.61■■□□□ 1.85
CHRNA3-206ENST00000559658 KDM5BQ9UGL1 1544 aa26.61■■□□□ 1.85
CHRNA3-206ENST00000559658 RRBP1Q9P2E9 1410 aaKnown RBP26.6■■□□□ 1.85
CHRNA3-206ENST00000559658 CDK11AQ9UQ88 783 aaPredicted RBP26.53■■□□□ 1.84
CHRNA3-206ENST00000559658 CCNB3Q8WWL7 1395 aa26.52■■□□□ 1.84
CHRNA3-206ENST00000559658 MYOM3Q5VTT5 1437 aa26.52■■□□□ 1.84
CHRNA3-206ENST00000559658 FGD6Q6ZV73 1430 aa26.5■■□□□ 1.83
CHRNA3-206ENST00000559658 PLEKHD1A6NEE1 506 aa26.49■■□□□ 1.83
CHRNA3-206ENST00000559658 ABCC10Q5T3U5 1492 aa26.46■■□□□ 1.83
CHRNA3-206ENST00000559658 CYB5RLQ6IPT4 315 aa26.45■■□□□ 1.83
CHRNA3-206ENST00000559658 TTC37Q6PGP7 1564 aa26.44■■□□□ 1.82
CHRNA3-206ENST00000559658 CDC42BPAQ5VT25 1732 aa26.43■■□□□ 1.82
CHRNA3-206ENST00000559658 PTPN23Q9H3S7 1636 aa26.43■■□□□ 1.82
CHRNA3-206ENST00000559658 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.4■■□□□ 1.82
CHRNA3-206ENST00000559658 GPATCH8Q9UKJ3 1502 aaKnown RBP26.39■■□□□ 1.82
CHRNA3-206ENST00000559658 FAM50AQ14320 339 aaKnown RBP26.39■■□□□ 1.82
CHRNA3-206ENST00000559658 ITSN2Q9NZM3 1697 aa26.39■■□□□ 1.81
CHRNA3-206ENST00000559658 WDR7Q9Y4E6 1490 aa26.37■■□□□ 1.81
CHRNA3-206ENST00000559658 ASXL2Q76L83 1435 aa26.36■■□□□ 1.81
CHRNA3-206ENST00000559658 KCNH8Q96L42 1107 aa26.36■■□□□ 1.81
CHRNA3-206ENST00000559658 ITGAEP38570 1179 aa26.35■■□□□ 1.81
CHRNA3-206ENST00000559658 TCOF1Q13428 1488 aaKnown RBP26.33■■□□□ 1.81
CHRNA3-206ENST00000559658 CDC42BPBQ9Y5S2 1711 aa26.33■■□□□ 1.81
CHRNA3-206ENST00000559658 MIA2Q96PC5 1412 aa26.32■■□□□ 1.8
CHRNA3-206ENST00000559658 PREX2Q70Z35 1606 aa26.32■■□□□ 1.8
CHRNA3-206ENST00000559658 ZNF644Q9H582 1327 aaPredicted RBP26.31■■□□□ 1.8
CHRNA3-206ENST00000559658 MYO5CQ9NQX4 1742 aa26.29■■□□□ 1.8
CHRNA3-206ENST00000559658 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.27■■□□□ 1.8
CHRNA3-206ENST00000559658 CAMSAP2Q08AD1 1489 aa26.26■■□□□ 1.79
CHRNA3-206ENST00000559658 PTPRKQ15262 1439 aa26.26■■□□□ 1.79
CHRNA3-206ENST00000559658 NPM1P06748 294 aaKnown RBP eCLIP26.25■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms