RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 CYB5RLQ6IPT4 315 aa18.87■□□□□ 0.61
SPG11-216ENST00000559347 SENP3Q9H4L4 574 aaPredicted RBP18.84■□□□□ 0.61
SPG11-216ENST00000559347 PHF23Q9BUL5 403 aaPredicted RBP18.79■□□□□ 0.6
SPG11-216ENST00000559347 KIAA0586Q9BVV6 1533 aa18.78■□□□□ 0.6
SPG11-216ENST00000559347 CARMIL1Q5VZK9 1371 aa18.78■□□□□ 0.6
SPG11-216ENST00000559347 PRG4Q92954 1404 aaPredicted RBP18.75■□□□□ 0.59
SPG11-216ENST00000559347 IQGAP2Q13576 1575 aa18.72■□□□□ 0.59
SPG11-216ENST00000559347 CTTNBP2Q8WZ74 1663 aa18.71■□□□□ 0.59
SPG11-216ENST00000559347 RAPGEF2Q9Y4G8 1499 aa18.71■□□□□ 0.59
SPG11-216ENST00000559347 JPH4Q96JJ6 628 aa18.69■□□□□ 0.58
SPG11-216ENST00000559347 ADCY10Q96PN6 1610 aa18.62■□□□□ 0.57
SPG11-216ENST00000559347 PRXQ9BXM0 1461 aa18.61■□□□□ 0.57
SPG11-216ENST00000559347 UGGT2Q9NYU1 1516 aa18.59■□□□□ 0.57
SPG11-216ENST00000559347 KIAA0556O60303 1618 aa18.57■□□□□ 0.56
SPG11-216ENST00000559347 DISP1Q96F81 1524 aa18.57■□□□□ 0.56
SPG11-216ENST00000559347 KIF13AQ9H1H9 1805 aa18.55■□□□□ 0.56
SPG11-216ENST00000559347 CARMIL2Q6F5E8 1435 aa18.55■□□□□ 0.56
SPG11-216ENST00000559347 TRHP20396 242 aaPredicted RBP18.54■□□□□ 0.56
SPG11-216ENST00000559347 EEA1Q15075 1411 aa18.53■□□□□ 0.56
SPG11-216ENST00000559347 MAPKBP1O60336 1514 aa18.51■□□□□ 0.55
SPG11-216ENST00000559347 TNIKQ9UKE5 1360 aa18.49■□□□□ 0.55
SPG11-216ENST00000559347 PTPRGP23470 1445 aa18.48■□□□□ 0.55
SPG11-216ENST00000559347 KIF21BO75037 1637 aa18.45■□□□□ 0.54
SPG11-216ENST00000559347 DIP2BQ9P265 1576 aa18.44■□□□□ 0.54
SPG11-216ENST00000559347 ABCC2Q92887 1545 aa18.44■□□□□ 0.54
SPG11-216ENST00000559347 CSRNP3Q8WYN3 585 aa18.43■□□□□ 0.54
SPG11-216ENST00000559347 UHRF1BP1LA0JNW5 1464 aa18.43■□□□□ 0.54
SPG11-216ENST00000559347 GOLGA3Q08378 1498 aa18.43■□□□□ 0.54
SPG11-216ENST00000559347 SAMD9Q5K651 1589 aa18.4■□□□□ 0.54
SPG11-216ENST00000559347 ABCC10Q5T3U5 1492 aa18.39■□□□□ 0.53
SPG11-216ENST00000559347 UACAQ9BZF9 1416 aa18.38■□□□□ 0.53
SPG11-216ENST00000559347 ZCCHC11Q5TAX3 1644 aaKnown RBP18.38■□□□□ 0.53
SPG11-216ENST00000559347 TTBK1Q5TCY1 1321 aaPredicted RBP18.36■□□□□ 0.53
SPG11-216ENST00000559347 NPM1P06748 294 aaKnown RBP eCLIP18.35■□□□□ 0.53
SPG11-216ENST00000559347 ABCA8O94911 1581 aa18.34■□□□□ 0.53
SPG11-216ENST00000559347 KDM5BQ9UGL1 1544 aa18.34■□□□□ 0.53
SPG11-216ENST00000559347 PLB1Q6P1J6 1458 aa18.32■□□□□ 0.52
SPG11-216ENST00000559347 FAM9AQ8IZU1 332 aaPredicted RBP18.31■□□□□ 0.52
SPG11-216ENST00000559347 ASXL2Q76L83 1435 aa18.29■□□□□ 0.52
SPG11-216ENST00000559347 TSPOAP1O95153 1857 aa18.29■□□□□ 0.52
SPG11-216ENST00000559347 GLI2P10070 1586 aa18.26■□□□□ 0.51
SPG11-216ENST00000559347 PPRC1Q5VV67 1664 aaKnown RBP18.25■□□□□ 0.51
SPG11-216ENST00000559347 EFCAB5A4FU69 1503 aa18.25■□□□□ 0.51
SPG11-216ENST00000559347 FAM69CQ0P6D2 419 aa18.24■□□□□ 0.51
SPG11-216ENST00000559347 RAPGEF6Q8TEU7 1601 aa18.23■□□□□ 0.51
SPG11-216ENST00000559347 MAP3K4Q9Y6R4 1608 aa18.23■□□□□ 0.51
SPG11-216ENST00000559347 WDR7Q9Y4E6 1490 aa18.2■□□□□ 0.5
SPG11-216ENST00000559347 EPRSP07814 1512 aaKnown RBP18.2■□□□□ 0.5
SPG11-216ENST00000559347 FHOD3Q2V2M9 1422 aa18.18■□□□□ 0.5
SPG11-216ENST00000559347 KDM6BO15054 1643 aa18.17■□□□□ 0.5
SPG11-216ENST00000559347 P3H3Q8IVL6 736 aa18.16■□□□□ 0.5
SPG11-216ENST00000559347 CFAP43Q8NDM7 1665 aa18.15■□□□□ 0.5
SPG11-216ENST00000559347 NUP153P49790 1475 aaKnown RBP18.12■□□□□ 0.49
SPG11-216ENST00000559347 ATP10BO94823 1461 aa18.11■□□□□ 0.49
SPG11-216ENST00000559347 RANGAP1P46060 587 aaPredicted RBP18.1■□□□□ 0.49
SPG11-216ENST00000559347 ARHGAP35Q9NRY4 1499 aa18.09■□□□□ 0.49
SPG11-216ENST00000559347 EHMT2Q96KQ7 1210 aa18.08■□□□□ 0.48
SPG11-216ENST00000559347 UBTFP17480 764 aaKnown RBP18.07■□□□□ 0.48
SPG11-216ENST00000559347 ABCA9Q8IUA7 1624 aa18.06■□□□□ 0.48
SPG11-216ENST00000559347 TEX14Q8IWB6 1497 aa18.06■□□□□ 0.48
SPG11-216ENST00000559347 HECW1Q76N89 1606 aa18.05■□□□□ 0.48
SPG11-216ENST00000559347 ARID3CA6NKF2 412 aa18.02■□□□□ 0.48
SPG11-216ENST00000559347 MAGI3Q5TCQ9 1506 aa18.02■□□□□ 0.47
SPG11-216ENST00000559347 LRRIQ1Q96JM4 1722 aa18.01■□□□□ 0.47
SPG11-216ENST00000559347 FMN1Q68DA7 1419 aa18.01■□□□□ 0.47
SPG11-216ENST00000559347 CDK13Q14004 1512 aaKnown RBP17.99■□□□□ 0.47
SPG11-216ENST00000559347 CD109Q6YHK3 1445 aa17.98■□□□□ 0.47
SPG11-216ENST00000559347 PCF11O94913 1555 aaKnown RBP17.96■□□□□ 0.47
SPG11-216ENST00000559347 COL17A1Q9UMD9 1497 aaPredicted RBP17.95■□□□□ 0.46
SPG11-216ENST00000559347 KCNH8Q96L42 1107 aa17.95■□□□□ 0.46
SPG11-216ENST00000559347 TTC37Q6PGP7 1564 aa17.93■□□□□ 0.46
SPG11-216ENST00000559347 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.91■□□□□ 0.46
SPG11-216ENST00000559347 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.9■□□□□ 0.46
SPG11-216ENST00000559347 HNRNPUL2Q1KMD3 747 aaKnown RBP17.9■□□□□ 0.46
SPG11-216ENST00000559347 CLIP1P30622 1438 aa17.89■□□□□ 0.45
SPG11-216ENST00000559347 CFAP74Q9C0B2 1584 aa17.88■□□□□ 0.45
SPG11-216ENST00000559347 ARAP3Q8WWN8 1544 aa17.87■□□□□ 0.45
SPG11-216ENST00000559347 NEO1Q92859 1461 aa17.86■□□□□ 0.45
SPG11-216ENST00000559347 FYCO1Q9BQS8 1478 aa17.86■□□□□ 0.45
SPG11-216ENST00000559347 KIF14Q15058 1648 aa17.86■□□□□ 0.45
SPG11-216ENST00000559347 MYO5CQ9NQX4 1742 aa17.86■□□□□ 0.45
SPG11-216ENST00000559347 CASKIN1Q8WXD9 1431 aa17.85■□□□□ 0.45
SPG11-216ENST00000559347 FRMPD1Q5SYB0 1578 aa17.84■□□□□ 0.45
SPG11-216ENST00000559347 CCDC18Q5T9S5 1454 aa17.84■□□□□ 0.45
SPG11-216ENST00000559347 PLEKHD1A6NEE1 506 aa17.83■□□□□ 0.44
SPG11-216ENST00000559347 RICTORQ6R327 1708 aa17.81■□□□□ 0.44
SPG11-216ENST00000559347 PHLDB1Q86UU1 1377 aa17.79■□□□□ 0.44
SPG11-216ENST00000559347 TROQ12816 1431 aaPredicted RBP17.79■□□□□ 0.44
SPG11-216ENST00000559347 CEP162Q5TB80 1403 aa17.79■□□□□ 0.44
SPG11-216ENST00000559347 FANCAO15360 1455 aa17.78■□□□□ 0.44
SPG11-216ENST00000559347 ATP1B4Q9UN42 357 aaPredicted RBP17.78■□□□□ 0.44
SPG11-216ENST00000559347 PREX2Q70Z35 1606 aa17.75■□□□□ 0.43
SPG11-216ENST00000559347 CDC42BPBQ9Y5S2 1711 aa17.75■□□□□ 0.43
SPG11-216ENST00000559347 ADGRL1O94910 1474 aa17.74■□□□□ 0.43
SPG11-216ENST00000559347 CDK11AQ9UQ88 783 aaPredicted RBP17.73■□□□□ 0.43
SPG11-216ENST00000559347 PLCH2O75038 1416 aa17.72■□□□□ 0.43
SPG11-216ENST00000559347 AKNAQ7Z591 1439 aa17.72■□□□□ 0.43
SPG11-216ENST00000559347 ARHGEF40Q8TER5 1519 aa17.72■□□□□ 0.43
SPG11-216ENST00000559347 CDC42BPAQ5VT25 1732 aa17.72■□□□□ 0.43
SPG11-216ENST00000559347 ZMYM4Q5VZL5 1548 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 157.5 ms