RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 KIF21BO75037 1637 aa15.1■□□□□ 0.01
LDLR-210ENST00000559340 ARAP1Q96P48 1450 aa15.07■□□□□ 0
LDLR-210ENST00000559340 NUP160Q12769 1436 aa15.05■□□□□ -0
LDLR-210ENST00000559340 GOLGA3Q08378 1498 aa15.03■□□□□ -0
LDLR-210ENST00000559340 CTTNBP2Q8WZ74 1663 aa15.03■□□□□ -0
LDLR-210ENST00000559340 CEP170Q5SW79 1584 aa15.02□□□□□ -0.01
LDLR-210ENST00000559340 UBTFP17480 764 aaKnown RBP15.01□□□□□ -0.01
LDLR-210ENST00000559340 TRHP20396 242 aaPredicted RBP15.01□□□□□ -0.01
LDLR-210ENST00000559340 KIAA0586Q9BVV6 1533 aa15.01□□□□□ -0.01
LDLR-210ENST00000559340 CLASP1Q7Z460 1538 aa14.98□□□□□ -0.01
LDLR-210ENST00000559340 IQGAP2Q13576 1575 aa14.96□□□□□ -0.01
LDLR-210ENST00000559340 JPH4Q96JJ6 628 aa14.96□□□□□ -0.01
LDLR-210ENST00000559340 EHMT2Q96KQ7 1210 aa14.94□□□□□ -0.02
LDLR-210ENST00000559340 SHROOM2Q13796 1616 aa14.92□□□□□ -0.02
LDLR-210ENST00000559340 TNIKQ9UKE5 1360 aa14.9□□□□□ -0.02
LDLR-210ENST00000559340 CARMIL2Q6F5E8 1435 aa14.89□□□□□ -0.03
LDLR-210ENST00000559340 UGGT2Q9NYU1 1516 aa14.87□□□□□ -0.03
LDLR-210ENST00000559340 PRG4Q92954 1404 aaPredicted RBP14.86□□□□□ -0.03
LDLR-210ENST00000559340 LOC105371045A0A1W2PR82 267 aa14.86□□□□□ -0.03
LDLR-210ENST00000559340 EFCAB5A4FU69 1503 aa14.82□□□□□ -0.04
LDLR-210ENST00000559340 RANGAP1P46060 587 aaPredicted RBP14.81□□□□□ -0.04
LDLR-210ENST00000559340 KIAA0556O60303 1618 aa14.79□□□□□ -0.04
LDLR-210ENST00000559340 DISP1Q96F81 1524 aa14.78□□□□□ -0.04
LDLR-210ENST00000559340 SAMD9Q5K651 1589 aa14.77□□□□□ -0.04
LDLR-210ENST00000559340 PTPRGP23470 1445 aa14.75□□□□□ -0.05
LDLR-210ENST00000559340 CLIP1P30622 1438 aa14.75□□□□□ -0.05
LDLR-210ENST00000559340 P3H3Q8IVL6 736 aa14.75□□□□□ -0.05
LDLR-210ENST00000559340 ERCC6L2Q5T890 1561 aa14.75□□□□□ -0.05
LDLR-210ENST00000559340 CEP162Q5TB80 1403 aa14.73□□□□□ -0.05
LDLR-210ENST00000559340 TTBK1Q5TCY1 1321 aaPredicted RBP14.71□□□□□ -0.05
LDLR-210ENST00000559340 ARHGAP35Q9NRY4 1499 aa14.71□□□□□ -0.05
LDLR-210ENST00000559340 FMN1Q68DA7 1419 aa14.69□□□□□ -0.06
LDLR-210ENST00000559340 AEBP2Q6ZN18 517 aaPredicted RBP14.69□□□□□ -0.06
LDLR-210ENST00000559340 FHOD3Q2V2M9 1422 aa14.68□□□□□ -0.06
LDLR-210ENST00000559340 UACAQ9BZF9 1416 aa14.66□□□□□ -0.06
LDLR-210ENST00000559340 NPM1P06748 294 aaKnown RBP eCLIP14.65□□□□□ -0.06
LDLR-210ENST00000559340 UHRF1BP1LA0JNW5 1464 aa14.63□□□□□ -0.07
LDLR-210ENST00000559340 RAPGEF6Q8TEU7 1601 aa14.62□□□□□ -0.07
LDLR-210ENST00000559340 ABCA8O94911 1581 aa14.61□□□□□ -0.07
LDLR-210ENST00000559340 ABCC2Q92887 1545 aa14.61□□□□□ -0.07
LDLR-210ENST00000559340 ATP1B4Q9UN42 357 aaPredicted RBP14.59□□□□□ -0.07
LDLR-210ENST00000559340 PLB1Q6P1J6 1458 aa14.58□□□□□ -0.08
LDLR-210ENST00000559340 ADCY10Q96PN6 1610 aa14.57□□□□□ -0.08
LDLR-210ENST00000559340 CASKIN1Q8WXD9 1431 aa14.57□□□□□ -0.08
LDLR-210ENST00000559340 HECW1Q76N89 1606 aa14.56□□□□□ -0.08
LDLR-210ENST00000559340 VPS8Q8N3P4 1428 aa14.56□□□□□ -0.08
LDLR-210ENST00000559340 FYCO1Q9BQS8 1478 aa14.55□□□□□ -0.08
LDLR-210ENST00000559340 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.54□□□□□ -0.08
LDLR-210ENST00000559340 HNRNPUL2Q1KMD3 747 aaKnown RBP14.54□□□□□ -0.08
LDLR-210ENST00000559340 KDM5BQ9UGL1 1544 aa14.53□□□□□ -0.08
LDLR-210ENST00000559340 APLP2Q06481 763 aa14.53□□□□□ -0.08
LDLR-210ENST00000559340 CDK11AQ9UQ88 783 aaPredicted RBP14.53□□□□□ -0.08
LDLR-210ENST00000559340 PCF11O94913 1555 aaKnown RBP14.51□□□□□ -0.09
LDLR-210ENST00000559340 CCDC18Q5T9S5 1454 aa14.51□□□□□ -0.09
LDLR-210ENST00000559340 ZCCHC11Q5TAX3 1644 aaKnown RBP14.51□□□□□ -0.09
LDLR-210ENST00000559340 NUP153P49790 1475 aaKnown RBP14.5□□□□□ -0.09
LDLR-210ENST00000559340 ATP10BO94823 1461 aa14.5□□□□□ -0.09
LDLR-210ENST00000559340 ABCC10Q5T3U5 1492 aa14.5□□□□□ -0.09
LDLR-210ENST00000559340 PLEKHD1A6NEE1 506 aa14.49□□□□□ -0.09
LDLR-210ENST00000559340 FAM69CQ0P6D2 419 aa14.49□□□□□ -0.09
LDLR-210ENST00000559340 MAPKBP1O60336 1514 aa14.49□□□□□ -0.09
LDLR-210ENST00000559340 EPRSP07814 1512 aaKnown RBP14.49□□□□□ -0.09
LDLR-210ENST00000559340 KIF13AQ9H1H9 1805 aa14.48□□□□□ -0.09
LDLR-210ENST00000559340 ARID3CA6NKF2 412 aa14.47□□□□□ -0.09
LDLR-210ENST00000559340 LRRIQ1Q96JM4 1722 aa14.46□□□□□ -0.1
LDLR-210ENST00000559340 ASXL2Q76L83 1435 aa14.43□□□□□ -0.1
LDLR-210ENST00000559340 MAP3K1Q13233 1512 aa14.43□□□□□ -0.1
LDLR-210ENST00000559340 CDK13Q14004 1512 aaKnown RBP14.42□□□□□ -0.1
LDLR-210ENST00000559340 DIP2BQ9P265 1576 aa14.42□□□□□ -0.1
LDLR-210ENST00000559340 WDR7Q9Y4E6 1490 aa14.41□□□□□ -0.1
LDLR-210ENST00000559340 CFAP43Q8NDM7 1665 aa14.41□□□□□ -0.1
LDLR-210ENST00000559340 TIAM1Q13009 1591 aa14.39□□□□□ -0.11
LDLR-210ENST00000559340 MTUS2Q5JR59 1369 aa14.39□□□□□ -0.11
LDLR-210ENST00000559340 KCNH8Q96L42 1107 aa14.39□□□□□ -0.11
LDLR-210ENST00000559340 TROQ12816 1431 aaPredicted RBP14.38□□□□□ -0.11
LDLR-210ENST00000559340 EHBP1L1Q8N3D4 1523 aa14.35□□□□□ -0.11
LDLR-210ENST00000559340 GLI2P10070 1586 aa14.34□□□□□ -0.11
LDLR-210ENST00000559340 KIF14Q15058 1648 aa14.34□□□□□ -0.11
LDLR-210ENST00000559340 KDM6BO15054 1643 aa14.33□□□□□ -0.11
LDLR-210ENST00000559340 SUPT6HQ7KZ85 1726 aaKnown RBP14.33□□□□□ -0.12
LDLR-210ENST00000559340 LRRC9Q6ZRR7 1453 aa14.32□□□□□ -0.12
LDLR-210ENST00000559340 ABCA9Q8IUA7 1624 aa14.3□□□□□ -0.12
LDLR-210ENST00000559340 TSPOAP1O95153 1857 aa14.29□□□□□ -0.12
LDLR-210ENST00000559340 MAGI3Q5TCQ9 1506 aa14.29□□□□□ -0.12
LDLR-210ENST00000559340 KANK4Q5T7N3 995 aaPredicted RBP14.28□□□□□ -0.12
LDLR-210ENST00000559340 CD109Q6YHK3 1445 aa14.28□□□□□ -0.12
LDLR-210ENST00000559340 MYO5CQ9NQX4 1742 aa14.28□□□□□ -0.12
LDLR-210ENST00000559340 MAP3K4Q9Y6R4 1608 aa14.27□□□□□ -0.12
LDLR-210ENST00000559340 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.26□□□□□ -0.13
LDLR-210ENST00000559340 KDM4FA0A1W2PPD8 638 aa14.26□□□□□ -0.13
LDLR-210ENST00000559340 CCNB3Q8WWL7 1395 aa14.25□□□□□ -0.13
LDLR-210ENST00000559340 ITSN2Q9NZM3 1697 aa14.24□□□□□ -0.13
LDLR-210ENST00000559340 NCOA2Q15596 1464 aa14.24□□□□□ -0.13
LDLR-210ENST00000559340 TEX14Q8IWB6 1497 aa14.24□□□□□ -0.13
LDLR-210ENST00000559340 EFCAB2Q5VUJ9 269 aa14.23□□□□□ -0.13
LDLR-210ENST00000559340 CDC42BPAQ5VT25 1732 aa14.23□□□□□ -0.13
LDLR-210ENST00000559340 PHLDB1Q86UU1 1377 aa14.22□□□□□ -0.13
LDLR-210ENST00000559340 TTC37Q6PGP7 1564 aa14.22□□□□□ -0.13
LDLR-210ENST00000559340 ARAP3Q8WWN8 1544 aa14.22□□□□□ -0.13
LDLR-210ENST00000559340 PLCH2O75038 1416 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 1175.5 ms