RNA–Protein interactions for RNA: ENST00000559309.5

SNRPA1-207, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 5

Gene SNRPA1, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-207ENST00000559309 RIMBP3Q9UFD9 1639 aa24.53■■□□□ 1.52
SNRPA1-207ENST00000559309 ARHGEF11O15085 1522 aa24.48■■□□□ 1.51
SNRPA1-207ENST00000559309 FBLN2P98095 1184 aa24.47■■□□□ 1.51
SNRPA1-207ENST00000559309 GOLGA3Q08378 1498 aa24.45■■□□□ 1.51
SNRPA1-207ENST00000559309 KIAA0586Q9BVV6 1533 aa24.45■■□□□ 1.5
SNRPA1-207ENST00000559309 CTTNBP2Q8WZ74 1663 aa24.43■■□□□ 1.5
SNRPA1-207ENST00000559309 SHROOM2Q13796 1616 aa24.42■■□□□ 1.5
SNRPA1-207ENST00000559309 IQGAP2Q13576 1575 aa24.36■■□□□ 1.49
SNRPA1-207ENST00000559309 CYB5RLQ6IPT4 315 aa24.31■■□□□ 1.48
SNRPA1-207ENST00000559309 UGGT2Q9NYU1 1516 aa24.3■■□□□ 1.48
SNRPA1-207ENST00000559309 TNIKQ9UKE5 1360 aa24.27■■□□□ 1.48
SNRPA1-207ENST00000559309 ARAP1Q96P48 1450 aa24.24■■□□□ 1.47
SNRPA1-207ENST00000559309 JPH4Q96JJ6 628 aa24.23■■□□□ 1.47
SNRPA1-207ENST00000559309 DISP1Q96F81 1524 aa24.21■■□□□ 1.47
SNRPA1-207ENST00000559309 SAMD9Q5K651 1589 aa24.2■■□□□ 1.47
SNRPA1-207ENST00000559309 ERCC6L2Q5T890 1561 aa24.18■■□□□ 1.46
SNRPA1-207ENST00000559309 LOC105371045A0A1W2PR82 267 aa24.17■■□□□ 1.46
SNRPA1-207ENST00000559309 UBTFP17480 764 aaKnown RBP24.16■■□□□ 1.46
SNRPA1-207ENST00000559309 PRG4Q92954 1404 aaPredicted RBP24.16■■□□□ 1.46
SNRPA1-207ENST00000559309 KIAA0556O60303 1618 aa24.15■■□□□ 1.46
SNRPA1-207ENST00000559309 EFCAB5A4FU69 1503 aa24.13■■□□□ 1.45
SNRPA1-207ENST00000559309 EHMT2Q96KQ7 1210 aa24.09■■□□□ 1.45
SNRPA1-207ENST00000559309 ARHGAP35Q9NRY4 1499 aa24.07■■□□□ 1.44
SNRPA1-207ENST00000559309 CARMIL2Q6F5E8 1435 aa24.07■■□□□ 1.44
SNRPA1-207ENST00000559309 TRHP20396 242 aaPredicted RBP24.05■■□□□ 1.44
SNRPA1-207ENST00000559309 CEP162Q5TB80 1403 aa24.01■■□□□ 1.43
SNRPA1-207ENST00000559309 CLIP1P30622 1438 aa24■■□□□ 1.43
SNRPA1-207ENST00000559309 FHOD3Q2V2M9 1422 aa23.93■■□□□ 1.42
SNRPA1-207ENST00000559309 PTPRGP23470 1445 aa23.91■■□□□ 1.42
SNRPA1-207ENST00000559309 ABCA8O94911 1581 aa23.89■■□□□ 1.41
SNRPA1-207ENST00000559309 UHRF1BP1LA0JNW5 1464 aa23.86■■□□□ 1.41
SNRPA1-207ENST00000559309 P3H3Q8IVL6 736 aa23.84■■□□□ 1.41
SNRPA1-207ENST00000559309 RANGAP1P46060 587 aaPredicted RBP23.83■■□□□ 1.41
SNRPA1-207ENST00000559309 FMN1Q68DA7 1419 aa23.83■■□□□ 1.4
SNRPA1-207ENST00000559309 PLB1Q6P1J6 1458 aa23.81■■□□□ 1.4
SNRPA1-207ENST00000559309 ADCY10Q96PN6 1610 aa23.81■■□□□ 1.4
SNRPA1-207ENST00000559309 ABCC2Q92887 1545 aa23.81■■□□□ 1.4
SNRPA1-207ENST00000559309 UACAQ9BZF9 1416 aa23.81■■□□□ 1.4
SNRPA1-207ENST00000559309 RAPGEF6Q8TEU7 1601 aa23.79■■□□□ 1.4
SNRPA1-207ENST00000559309 CASKIN1Q8WXD9 1431 aa23.75■■□□□ 1.39
SNRPA1-207ENST00000559309 NUP153P49790 1475 aaKnown RBP23.74■■□□□ 1.39
SNRPA1-207ENST00000559309 KDM5BQ9UGL1 1544 aa23.74■■□□□ 1.39
SNRPA1-207ENST00000559309 PCF11O94913 1555 aaKnown RBP23.74■■□□□ 1.39
SNRPA1-207ENST00000559309 VPS8Q8N3P4 1428 aa23.73■■□□□ 1.39
SNRPA1-207ENST00000559309 FYCO1Q9BQS8 1478 aa23.71■■□□□ 1.39
SNRPA1-207ENST00000559309 LRRIQ1Q96JM4 1722 aa23.7■■□□□ 1.38
SNRPA1-207ENST00000559309 HECW1Q76N89 1606 aa23.69■■□□□ 1.38
SNRPA1-207ENST00000559309 ATP10BO94823 1461 aa23.64■■□□□ 1.38
SNRPA1-207ENST00000559309 ZCCHC11Q5TAX3 1644 aaKnown RBP23.64■■□□□ 1.38
SNRPA1-207ENST00000559309 EPRSP07814 1512 aaKnown RBP23.63■■□□□ 1.37
SNRPA1-207ENST00000559309 TTBK1Q5TCY1 1321 aaPredicted RBP23.62■■□□□ 1.37
SNRPA1-207ENST00000559309 MAPKBP1O60336 1514 aa23.6■■□□□ 1.37
SNRPA1-207ENST00000559309 CCDC18Q5T9S5 1454 aa23.57■■□□□ 1.36
SNRPA1-207ENST00000559309 MAP3K1Q13233 1512 aa23.57■■□□□ 1.36
SNRPA1-207ENST00000559309 CDK13Q14004 1512 aaKnown RBP23.55■■□□□ 1.36
SNRPA1-207ENST00000559309 CFAP43Q8NDM7 1665 aa23.54■■□□□ 1.36
SNRPA1-207ENST00000559309 TIAM1Q13009 1591 aa23.5■■□□□ 1.35
SNRPA1-207ENST00000559309 AEBP2Q6ZN18 517 aaPredicted RBP23.49■■□□□ 1.35
SNRPA1-207ENST00000559309 ASXL2Q76L83 1435 aa23.48■■□□□ 1.35
SNRPA1-207ENST00000559309 MAGI3Q5TCQ9 1506 aa23.48■■□□□ 1.35
SNRPA1-207ENST00000559309 WDR7Q9Y4E6 1490 aa23.45■■□□□ 1.34
SNRPA1-207ENST00000559309 NPM1P06748 294 aaKnown RBP eCLIP23.44■■□□□ 1.34
SNRPA1-207ENST00000559309 TROQ12816 1431 aaPredicted RBP23.4■■□□□ 1.34
SNRPA1-207ENST00000559309 GLI2P10070 1586 aa23.4■■□□□ 1.34
SNRPA1-207ENST00000559309 DIP2BQ9P265 1576 aa23.4■■□□□ 1.34
SNRPA1-207ENST00000559309 ABCC10Q5T3U5 1492 aa23.39■■□□□ 1.34
SNRPA1-207ENST00000559309 ARID3CA6NKF2 412 aa23.38■■□□□ 1.33
SNRPA1-207ENST00000559309 LRRC9Q6ZRR7 1453 aa23.37■■□□□ 1.33
SNRPA1-207ENST00000559309 ATP1B4Q9UN42 357 aaPredicted RBP23.37■■□□□ 1.33
SNRPA1-207ENST00000559309 KIF13AQ9H1H9 1805 aa23.36■■□□□ 1.33
SNRPA1-207ENST00000559309 EHBP1L1Q8N3D4 1523 aa23.36■■□□□ 1.33
SNRPA1-207ENST00000559309 PLEKHD1A6NEE1 506 aa23.34■■□□□ 1.33
SNRPA1-207ENST00000559309 CDK11AQ9UQ88 783 aaPredicted RBP23.34■■□□□ 1.33
SNRPA1-207ENST00000559309 ABCA9Q8IUA7 1624 aa23.33■■□□□ 1.33
SNRPA1-207ENST00000559309 KIF14Q15058 1648 aa23.32■■□□□ 1.32
SNRPA1-207ENST00000559309 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.3■■□□□ 1.32
SNRPA1-207ENST00000559309 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.29■■□□□ 1.32
SNRPA1-207ENST00000559309 HNRNPUL2Q1KMD3 747 aaKnown RBP23.29■■□□□ 1.32
SNRPA1-207ENST00000559309 KANK4Q5T7N3 995 aaPredicted RBP23.29■■□□□ 1.32
SNRPA1-207ENST00000559309 MAP3K4Q9Y6R4 1608 aa23.29■■□□□ 1.32
SNRPA1-207ENST00000559309 TTC37Q6PGP7 1564 aa23.27■■□□□ 1.32
SNRPA1-207ENST00000559309 MTUS2Q5JR59 1369 aa23.27■■□□□ 1.31
SNRPA1-207ENST00000559309 FAM69CQ0P6D2 419 aa23.26■■□□□ 1.31
SNRPA1-207ENST00000559309 SUPT6HQ7KZ85 1726 aaKnown RBP23.25■■□□□ 1.31
SNRPA1-207ENST00000559309 NCOA2Q15596 1464 aa23.21■■□□□ 1.31
SNRPA1-207ENST00000559309 ARAP3Q8WWN8 1544 aa23.21■■□□□ 1.31
SNRPA1-207ENST00000559309 PPRC1Q5VV67 1664 aaKnown RBP23.21■■□□□ 1.31
SNRPA1-207ENST00000559309 APLP2Q06481 763 aa23.2■■□□□ 1.3
SNRPA1-207ENST00000559309 CDC42BPAQ5VT25 1732 aa23.19■■□□□ 1.3
SNRPA1-207ENST00000559309 KCNH8Q96L42 1107 aa23.18■■□□□ 1.3
SNRPA1-207ENST00000559309 PREX2Q70Z35 1606 aa23.16■■□□□ 1.3
SNRPA1-207ENST00000559309 GPATCH8Q9UKJ3 1502 aaKnown RBP23.16■■□□□ 1.3
SNRPA1-207ENST00000559309 MYO5CQ9NQX4 1742 aa23.16■■□□□ 1.3
SNRPA1-207ENST00000559309 CDC42BPBQ9Y5S2 1711 aa23.15■■□□□ 1.3
SNRPA1-207ENST00000559309 PLCH2O75038 1416 aa23.15■■□□□ 1.3
SNRPA1-207ENST00000559309 CD109Q6YHK3 1445 aa23.14■■□□□ 1.29
SNRPA1-207ENST00000559309 ITSN2Q9NZM3 1697 aa23.11■■□□□ 1.29
SNRPA1-207ENST00000559309 PHLDB1Q86UU1 1377 aa23.09■■□□□ 1.29
SNRPA1-207ENST00000559309 MYOM3Q5VTT5 1437 aa23.07■■□□□ 1.28
SNRPA1-207ENST00000559309 CCNB3Q8WWL7 1395 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms