RNA–Protein interactions for RNA: ENST00000559108.1

TPM1-217, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-217ENST00000559108 ERCC6L2Q5T890 1561 aa18.24■□□□□ 0.51
TPM1-217ENST00000559108 CTTNBP2Q8WZ74 1663 aa18.23■□□□□ 0.51
TPM1-217ENST00000559108 RIMBP3CA6NJZ7 1639 aa18.22■□□□□ 0.51
TPM1-217ENST00000559108 RIMBP3BA6NNM3 1639 aa18.22■□□□□ 0.51
TPM1-217ENST00000559108 RIMBP3Q9UFD9 1639 aa18.22■□□□□ 0.51
TPM1-217ENST00000559108 ARHGEF11O15085 1522 aa18.2■□□□□ 0.5
TPM1-217ENST00000559108 KIAA0586Q9BVV6 1533 aa18.18■□□□□ 0.5
TPM1-217ENST00000559108 IQGAP2Q13576 1575 aa18.16■□□□□ 0.5
TPM1-217ENST00000559108 ARAP1Q96P48 1450 aa18.1■□□□□ 0.49
TPM1-217ENST00000559108 EHMT2Q96KQ7 1210 aa18.09■□□□□ 0.49
TPM1-217ENST00000559108 GOLGA3Q08378 1498 aa18.08■□□□□ 0.49
TPM1-217ENST00000559108 UGGT2Q9NYU1 1516 aa18.08■□□□□ 0.48
TPM1-217ENST00000559108 PRG4Q92954 1404 aaPredicted RBP18.07■□□□□ 0.48
TPM1-217ENST00000559108 JPH4Q96JJ6 628 aa18.06■□□□□ 0.48
TPM1-217ENST00000559108 DISP1Q96F81 1524 aa18.06■□□□□ 0.48
TPM1-217ENST00000559108 KIAA0556O60303 1618 aa18.03■□□□□ 0.48
TPM1-217ENST00000559108 SAMD9Q5K651 1589 aa18■□□□□ 0.47
TPM1-217ENST00000559108 LOC105371045A0A1W2PR82 267 aa17.91■□□□□ 0.46
TPM1-217ENST00000559108 UBTFP17480 764 aaKnown RBP17.91■□□□□ 0.46
TPM1-217ENST00000559108 CYB5RLQ6IPT4 315 aa17.91■□□□□ 0.46
TPM1-217ENST00000559108 CARMIL2Q6F5E8 1435 aa17.89■□□□□ 0.45
TPM1-217ENST00000559108 ARHGAP35Q9NRY4 1499 aa17.88■□□□□ 0.45
TPM1-217ENST00000559108 ADCY10Q96PN6 1610 aa17.88■□□□□ 0.45
TPM1-217ENST00000559108 RANGAP1P46060 587 aaPredicted RBP17.88■□□□□ 0.45
TPM1-217ENST00000559108 TNIKQ9UKE5 1360 aa17.87■□□□□ 0.45
TPM1-217ENST00000559108 FHOD3Q2V2M9 1422 aa17.86■□□□□ 0.45
TPM1-217ENST00000559108 EFCAB5A4FU69 1503 aa17.86■□□□□ 0.45
TPM1-217ENST00000559108 P3H3Q8IVL6 736 aa17.85■□□□□ 0.45
TPM1-217ENST00000559108 PTPRGP23470 1445 aa17.83■□□□□ 0.45
TPM1-217ENST00000559108 TTBK1Q5TCY1 1321 aaPredicted RBP17.83■□□□□ 0.44
TPM1-217ENST00000559108 ABCA8O94911 1581 aa17.82■□□□□ 0.44
TPM1-217ENST00000559108 PLB1Q6P1J6 1458 aa17.82■□□□□ 0.44
TPM1-217ENST00000559108 ABCC2Q92887 1545 aa17.77■□□□□ 0.44
TPM1-217ENST00000559108 CLIP1P30622 1438 aa17.76■□□□□ 0.43
TPM1-217ENST00000559108 CEP162Q5TB80 1403 aa17.76■□□□□ 0.43
TPM1-217ENST00000559108 UACAQ9BZF9 1416 aa17.75■□□□□ 0.43
TPM1-217ENST00000559108 LRRIQ1Q96JM4 1722 aa17.75■□□□□ 0.43
TPM1-217ENST00000559108 UHRF1BP1LA0JNW5 1464 aa17.75■□□□□ 0.43
TPM1-217ENST00000559108 RAPGEF6Q8TEU7 1601 aa17.74■□□□□ 0.43
TPM1-217ENST00000559108 ZCCHC11Q5TAX3 1644 aaKnown RBP17.72■□□□□ 0.43
TPM1-217ENST00000559108 PCF11O94913 1555 aaKnown RBP17.7■□□□□ 0.42
TPM1-217ENST00000559108 NUP153P49790 1475 aaKnown RBP17.69■□□□□ 0.42
TPM1-217ENST00000559108 KDM5BQ9UGL1 1544 aa17.69■□□□□ 0.42
TPM1-217ENST00000559108 MAPKBP1O60336 1514 aa17.64■□□□□ 0.41
TPM1-217ENST00000559108 KIF13AQ9H1H9 1805 aa17.63■□□□□ 0.41
TPM1-217ENST00000559108 ATP10BO94823 1461 aa17.63■□□□□ 0.41
TPM1-217ENST00000559108 CDK13Q14004 1512 aaKnown RBP17.62■□□□□ 0.41
TPM1-217ENST00000559108 FMN1Q68DA7 1419 aa17.62■□□□□ 0.41
TPM1-217ENST00000559108 HECW1Q76N89 1606 aa17.61■□□□□ 0.41
TPM1-217ENST00000559108 ARID3CA6NKF2 412 aa17.61■□□□□ 0.41
TPM1-217ENST00000559108 DIP2BQ9P265 1576 aa17.58■□□□□ 0.41
TPM1-217ENST00000559108 ASXL2Q76L83 1435 aa17.58■□□□□ 0.41
TPM1-217ENST00000559108 CASKIN1Q8WXD9 1431 aa17.58■□□□□ 0.41
TPM1-217ENST00000559108 EPRSP07814 1512 aaKnown RBP17.57■□□□□ 0.4
TPM1-217ENST00000559108 FYCO1Q9BQS8 1478 aa17.56■□□□□ 0.4
TPM1-217ENST00000559108 MAGI3Q5TCQ9 1506 aa17.52■□□□□ 0.4
TPM1-217ENST00000559108 WDR7Q9Y4E6 1490 aa17.52■□□□□ 0.4
TPM1-217ENST00000559108 VPS8Q8N3P4 1428 aa17.52■□□□□ 0.4
TPM1-217ENST00000559108 ABCC10Q5T3U5 1492 aa17.51■□□□□ 0.39
TPM1-217ENST00000559108 CFAP43Q8NDM7 1665 aa17.49■□□□□ 0.39
TPM1-217ENST00000559108 NPM1P06748 294 aaKnown RBP eCLIP17.49■□□□□ 0.39
TPM1-217ENST00000559108 PPRC1Q5VV67 1664 aaKnown RBP17.48■□□□□ 0.39
TPM1-217ENST00000559108 KIF14Q15058 1648 aa17.47■□□□□ 0.39
TPM1-217ENST00000559108 GLI2P10070 1586 aa17.46■□□□□ 0.39
TPM1-217ENST00000559108 ATP1B4Q9UN42 357 aaPredicted RBP17.46■□□□□ 0.39
TPM1-217ENST00000559108 MAP3K4Q9Y6R4 1608 aa17.46■□□□□ 0.39
TPM1-217ENST00000559108 CCDC18Q5T9S5 1454 aa17.44■□□□□ 0.38
TPM1-217ENST00000559108 TSPOAP1O95153 1857 aa17.44■□□□□ 0.38
TPM1-217ENST00000559108 TIAM1Q13009 1591 aa17.43■□□□□ 0.38
TPM1-217ENST00000559108 TTC37Q6PGP7 1564 aa17.43■□□□□ 0.38
TPM1-217ENST00000559108 ABCA9Q8IUA7 1624 aa17.42■□□□□ 0.38
TPM1-217ENST00000559108 TRHP20396 242 aaPredicted RBP17.41■□□□□ 0.38
TPM1-217ENST00000559108 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.4■□□□□ 0.38
TPM1-217ENST00000559108 HNRNPUL2Q1KMD3 747 aaKnown RBP17.4■□□□□ 0.38
TPM1-217ENST00000559108 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.4■□□□□ 0.38
TPM1-217ENST00000559108 FAM69CQ0P6D2 419 aa17.39■□□□□ 0.37
TPM1-217ENST00000559108 TROQ12816 1431 aaPredicted RBP17.38■□□□□ 0.37
TPM1-217ENST00000559108 KCNH8Q96L42 1107 aa17.37■□□□□ 0.37
TPM1-217ENST00000559108 PLEKHD1A6NEE1 506 aa17.33■□□□□ 0.36
TPM1-217ENST00000559108 MAP3K1Q13233 1512 aa17.32■□□□□ 0.36
TPM1-217ENST00000559108 EHBP1L1Q8N3D4 1523 aa17.32■□□□□ 0.36
TPM1-217ENST00000559108 CDC42BPAQ5VT25 1732 aa17.32■□□□□ 0.36
TPM1-217ENST00000559108 LRRC9Q6ZRR7 1453 aa17.31■□□□□ 0.36
TPM1-217ENST00000559108 MYO5CQ9NQX4 1742 aa17.3■□□□□ 0.36
TPM1-217ENST00000559108 CDC42BPBQ9Y5S2 1711 aa17.3■□□□□ 0.36
TPM1-217ENST00000559108 KANK4Q5T7N3 995 aaPredicted RBP17.3■□□□□ 0.36
TPM1-217ENST00000559108 CD109Q6YHK3 1445 aa17.29■□□□□ 0.36
TPM1-217ENST00000559108 PREX2Q70Z35 1606 aa17.28■□□□□ 0.36
TPM1-217ENST00000559108 SUPT6HQ7KZ85 1726 aaKnown RBP17.25■□□□□ 0.35
TPM1-217ENST00000559108 MTUS2Q5JR59 1369 aa17.25■□□□□ 0.35
TPM1-217ENST00000559108 COL17A1Q9UMD9 1497 aaPredicted RBP17.24■□□□□ 0.35
TPM1-217ENST00000559108 CDK11AQ9UQ88 783 aaPredicted RBP17.24■□□□□ 0.35
TPM1-217ENST00000559108 NCOA2Q15596 1464 aa17.23■□□□□ 0.35
TPM1-217ENST00000559108 GPATCH8Q9UKJ3 1502 aaKnown RBP17.21■□□□□ 0.35
TPM1-217ENST00000559108 PLCH2O75038 1416 aa17.21■□□□□ 0.34
TPM1-217ENST00000559108 ARAP3Q8WWN8 1544 aa17.2■□□□□ 0.34
TPM1-217ENST00000559108 FRMPD1Q5SYB0 1578 aa17.19■□□□□ 0.34
TPM1-217ENST00000559108 TEX14Q8IWB6 1497 aa17.18■□□□□ 0.34
TPM1-217ENST00000559108 KDM6BO15054 1643 aa17.18■□□□□ 0.34
TPM1-217ENST00000559108 ITSN2Q9NZM3 1697 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms