RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 DNAJC5Q9H3Z4 198 aa17.18■□□□□ 0.34
LRRC28-204ENST00000558172 GOLGA3Q08378 1498 aa17.15■□□□□ 0.34
LRRC28-204ENST00000558172 SHROOM2Q13796 1616 aa17.14■□□□□ 0.33
LRRC28-204ENST00000558172 IQGAP2Q13576 1575 aa17.13■□□□□ 0.33
LRRC28-204ENST00000558172 JPH4Q96JJ6 628 aa17.11■□□□□ 0.33
LRRC28-204ENST00000558172 UBTFP17480 764 aaKnown RBP17.09■□□□□ 0.33
LRRC28-204ENST00000558172 ARHGEF11O15085 1522 aa17.06■□□□□ 0.32
LRRC28-204ENST00000558172 UGGT2Q9NYU1 1516 aa17.05■□□□□ 0.32
LRRC28-204ENST00000558172 RIMBP3CA6NJZ7 1639 aa17.04■□□□□ 0.32
LRRC28-204ENST00000558172 RIMBP3BA6NNM3 1639 aa17.04■□□□□ 0.32
LRRC28-204ENST00000558172 RIMBP3Q9UFD9 1639 aa17.04■□□□□ 0.32
LRRC28-204ENST00000558172 EHMT2Q96KQ7 1210 aa17.04■□□□□ 0.32
LRRC28-204ENST00000558172 PRG4Q92954 1404 aaPredicted RBP17.04■□□□□ 0.32
LRRC28-204ENST00000558172 CARMIL2Q6F5E8 1435 aa17.02■□□□□ 0.31
LRRC28-204ENST00000558172 TNIKQ9UKE5 1360 aa16.99■□□□□ 0.31
LRRC28-204ENST00000558172 ERCC6L2Q5T890 1561 aa16.98■□□□□ 0.31
LRRC28-204ENST00000558172 DISP1Q96F81 1524 aa16.96■□□□□ 0.31
LRRC28-204ENST00000558172 KIAA0556O60303 1618 aa16.96■□□□□ 0.3
LRRC28-204ENST00000558172 SAMD9Q5K651 1589 aa16.94■□□□□ 0.3
LRRC28-204ENST00000558172 EFCAB5A4FU69 1503 aa16.93■□□□□ 0.3
LRRC28-204ENST00000558172 LOC105371045A0A1W2PR82 267 aa16.93■□□□□ 0.3
LRRC28-204ENST00000558172 ARAP1Q96P48 1450 aa16.92■□□□□ 0.3
LRRC28-204ENST00000558172 RANGAP1P46060 587 aaPredicted RBP16.9■□□□□ 0.3
LRRC28-204ENST00000558172 CYB5RLQ6IPT4 315 aa16.89■□□□□ 0.29
LRRC28-204ENST00000558172 PTPRGP23470 1445 aa16.88■□□□□ 0.29
LRRC28-204ENST00000558172 P3H3Q8IVL6 736 aa16.85■□□□□ 0.29
LRRC28-204ENST00000558172 ARHGAP35Q9NRY4 1499 aa16.84■□□□□ 0.29
LRRC28-204ENST00000558172 CLIP1P30622 1438 aa16.83■□□□□ 0.28
LRRC28-204ENST00000558172 CEP162Q5TB80 1403 aa16.81■□□□□ 0.28
LRRC28-204ENST00000558172 TTBK1Q5TCY1 1321 aaPredicted RBP16.81■□□□□ 0.28
LRRC28-204ENST00000558172 FHOD3Q2V2M9 1422 aa16.8■□□□□ 0.28
LRRC28-204ENST00000558172 UACAQ9BZF9 1416 aa16.79■□□□□ 0.28
LRRC28-204ENST00000558172 FMN1Q68DA7 1419 aa16.77■□□□□ 0.27
LRRC28-204ENST00000558172 UHRF1BP1LA0JNW5 1464 aa16.76■□□□□ 0.27
LRRC28-204ENST00000558172 ABCA8O94911 1581 aa16.76■□□□□ 0.27
LRRC28-204ENST00000558172 ADCY10Q96PN6 1610 aa16.75■□□□□ 0.27
LRRC28-204ENST00000558172 ABCC2Q92887 1545 aa16.75■□□□□ 0.27
LRRC28-204ENST00000558172 RAPGEF6Q8TEU7 1601 aa16.74■□□□□ 0.27
LRRC28-204ENST00000558172 PLB1Q6P1J6 1458 aa16.73■□□□□ 0.27
LRRC28-204ENST00000558172 NPM1P06748 294 aaKnown RBP eCLIP16.72■□□□□ 0.27
LRRC28-204ENST00000558172 KDM5BQ9UGL1 1544 aa16.67■□□□□ 0.26
LRRC28-204ENST00000558172 HECW1Q76N89 1606 aa16.66■□□□□ 0.26
LRRC28-204ENST00000558172 ZCCHC11Q5TAX3 1644 aaKnown RBP16.65■□□□□ 0.26
LRRC28-204ENST00000558172 CASKIN1Q8WXD9 1431 aa16.64■□□□□ 0.25
LRRC28-204ENST00000558172 NUP153P49790 1475 aaKnown RBP16.63■□□□□ 0.25
LRRC28-204ENST00000558172 FYCO1Q9BQS8 1478 aa16.62■□□□□ 0.25
LRRC28-204ENST00000558172 MAPKBP1O60336 1514 aa16.62■□□□□ 0.25
LRRC28-204ENST00000558172 ATP1B4Q9UN42 357 aaPredicted RBP16.62■□□□□ 0.25
LRRC28-204ENST00000558172 PCF11O94913 1555 aaKnown RBP16.62■□□□□ 0.25
LRRC28-204ENST00000558172 VPS8Q8N3P4 1428 aa16.62■□□□□ 0.25
LRRC28-204ENST00000558172 ATP10BO94823 1461 aa16.61■□□□□ 0.25
LRRC28-204ENST00000558172 LRRIQ1Q96JM4 1722 aa16.59■□□□□ 0.25
LRRC28-204ENST00000558172 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.58■□□□□ 0.24
LRRC28-204ENST00000558172 HNRNPUL2Q1KMD3 747 aaKnown RBP16.58■□□□□ 0.24
LRRC28-204ENST00000558172 EPRSP07814 1512 aaKnown RBP16.58■□□□□ 0.24
LRRC28-204ENST00000558172 CCDC18Q5T9S5 1454 aa16.57■□□□□ 0.24
LRRC28-204ENST00000558172 ASXL2Q76L83 1435 aa16.55■□□□□ 0.24
LRRC28-204ENST00000558172 ARID3CA6NKF2 412 aa16.55■□□□□ 0.24
LRRC28-204ENST00000558172 CDK11AQ9UQ88 783 aaPredicted RBP16.54■□□□□ 0.24
LRRC28-204ENST00000558172 PLEKHD1A6NEE1 506 aa16.53■□□□□ 0.24
LRRC28-204ENST00000558172 CDK13Q14004 1512 aaKnown RBP16.53■□□□□ 0.24
LRRC28-204ENST00000558172 WDR7Q9Y4E6 1490 aa16.52■□□□□ 0.23
LRRC28-204ENST00000558172 KIF13AQ9H1H9 1805 aa16.49■□□□□ 0.23
LRRC28-204ENST00000558172 ABCC10Q5T3U5 1492 aa16.49■□□□□ 0.23
LRRC28-204ENST00000558172 DIP2BQ9P265 1576 aa16.47■□□□□ 0.23
LRRC28-204ENST00000558172 CFAP43Q8NDM7 1665 aa16.47■□□□□ 0.23
LRRC28-204ENST00000558172 MAP3K1Q13233 1512 aa16.47■□□□□ 0.23
LRRC28-204ENST00000558172 APLP2Q06481 763 aa16.47■□□□□ 0.23
LRRC28-204ENST00000558172 GLI2P10070 1586 aa16.47■□□□□ 0.23
LRRC28-204ENST00000558172 TRHP20396 242 aaPredicted RBP16.46■□□□□ 0.23
LRRC28-204ENST00000558172 FAM69CQ0P6D2 419 aa16.45■□□□□ 0.22
LRRC28-204ENST00000558172 KCNH8Q96L42 1107 aa16.45■□□□□ 0.22
LRRC28-204ENST00000558172 TIAM1Q13009 1591 aa16.45■□□□□ 0.22
LRRC28-204ENST00000558172 TROQ12816 1431 aaPredicted RBP16.44■□□□□ 0.22
LRRC28-204ENST00000558172 ABCA9Q8IUA7 1624 aa16.41■□□□□ 0.22
LRRC28-204ENST00000558172 MTUS2Q5JR59 1369 aa16.4■□□□□ 0.22
LRRC28-204ENST00000558172 KIF14Q15058 1648 aa16.4■□□□□ 0.22
LRRC28-204ENST00000558172 MAGI3Q5TCQ9 1506 aa16.4■□□□□ 0.22
LRRC28-204ENST00000558172 EHBP1L1Q8N3D4 1523 aa16.4■□□□□ 0.22
LRRC28-204ENST00000558172 MAP3K4Q9Y6R4 1608 aa16.39■□□□□ 0.21
LRRC28-204ENST00000558172 TSPOAP1O95153 1857 aa16.37■□□□□ 0.21
LRRC28-204ENST00000558172 LRRC9Q6ZRR7 1453 aa16.37■□□□□ 0.21
LRRC28-204ENST00000558172 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.36■□□□□ 0.21
LRRC28-204ENST00000558172 SUPT6HQ7KZ85 1726 aaKnown RBP16.36■□□□□ 0.21
LRRC28-204ENST00000558172 CD109Q6YHK3 1445 aa16.35■□□□□ 0.21
LRRC28-204ENST00000558172 MYO5CQ9NQX4 1742 aa16.34■□□□□ 0.21
LRRC28-204ENST00000558172 TTC37Q6PGP7 1564 aa16.33■□□□□ 0.2
LRRC28-204ENST00000558172 KANK4Q5T7N3 995 aaPredicted RBP16.32■□□□□ 0.2
LRRC28-204ENST00000558172 PPRC1Q5VV67 1664 aaKnown RBP16.3■□□□□ 0.2
LRRC28-204ENST00000558172 TEX14Q8IWB6 1497 aa16.3■□□□□ 0.2
LRRC28-204ENST00000558172 CDC42BPAQ5VT25 1732 aa16.29■□□□□ 0.2
LRRC28-204ENST00000558172 ARAP3Q8WWN8 1544 aa16.29■□□□□ 0.2
LRRC28-204ENST00000558172 PLCH2O75038 1416 aa16.28■□□□□ 0.2
LRRC28-204ENST00000558172 NCOA2Q15596 1464 aa16.28■□□□□ 0.2
LRRC28-204ENST00000558172 CDC42BPBQ9Y5S2 1711 aa16.28■□□□□ 0.2
LRRC28-204ENST00000558172 ITSN2Q9NZM3 1697 aa16.27■□□□□ 0.2
LRRC28-204ENST00000558172 CFAP74Q9C0B2 1584 aa16.27■□□□□ 0.2
LRRC28-204ENST00000558172 PREX2Q70Z35 1606 aa16.27■□□□□ 0.19
LRRC28-204ENST00000558172 CCNB3Q8WWL7 1395 aa16.26■□□□□ 0.19
LRRC28-204ENST00000558172 PHLDB1Q86UU1 1377 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms