RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 CARMIL1Q5VZK9 1371 aa16.37■□□□□ 0.21
USP3-206ENST00000558157 TNIKQ9UKE5 1360 aa16.35■□□□□ 0.21
USP3-206ENST00000558157 UBTFP17480 764 aaKnown RBP16.35■□□□□ 0.21
USP3-206ENST00000558157 GRIN2BQ13224 1484 aa16.33■□□□□ 0.21
USP3-206ENST00000558157 ADAMTS12P58397 1594 aa16.31■□□□□ 0.2
USP3-206ENST00000558157 CCER1Q8TC90 406 aaPredicted RBP16.31■□□□□ 0.2
USP3-206ENST00000558157 CEP162Q5TB80 1403 aa16.28■□□□□ 0.2
USP3-206ENST00000558157 SNAPC4Q5SXM2 1469 aa16.27■□□□□ 0.2
USP3-206ENST00000558157 FHAD1B1AJZ9 1412 aa16.25■□□□□ 0.19
USP3-206ENST00000558157 CLSPNQ9HAW4 1339 aa16.25■□□□□ 0.19
USP3-206ENST00000558157 CTTNBP2Q8WZ74 1663 aa16.22■□□□□ 0.19
USP3-206ENST00000558157 MAGI1Q96QZ7 1491 aaPredicted RBP16.22■□□□□ 0.19
USP3-206ENST00000558157 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.21■□□□□ 0.19
USP3-206ENST00000558157 CLIP1P30622 1438 aa16.18■□□□□ 0.18
USP3-206ENST00000558157 ZNF316A6NFI3 1004 aaPredicted RBP16.17■□□□□ 0.18
USP3-206ENST00000558157 RANGAP1P46060 587 aaPredicted RBP16.16■□□□□ 0.18
USP3-206ENST00000558157 SYNJ2O15056 1496 aa16.16■□□□□ 0.18
USP3-206ENST00000558157 GRIN2AQ12879 1464 aa16.15■□□□□ 0.18
USP3-206ENST00000558157 BCL11AQ9H165 835 aa16.12■□□□□ 0.17
USP3-206ENST00000558157 ANP32EQ9BTT0 268 aa16.1■□□□□ 0.17
USP3-206ENST00000558157 ARHGAP35Q9NRY4 1499 aa16.09■□□□□ 0.17
USP3-206ENST00000558157 CHD1O14646 1710 aa16.08■□□□□ 0.17
USP3-206ENST00000558157 CHMP7Q8WUX9 453 aaPredicted RBP16.08■□□□□ 0.17
USP3-206ENST00000558157 ARAP1Q96P48 1450 aa16.08■□□□□ 0.16
USP3-206ENST00000558157 CEP170Q5SW79 1584 aa16.08■□□□□ 0.16
USP3-206ENST00000558157 IQGAP2Q13576 1575 aa16.07■□□□□ 0.16
USP3-206ENST00000558157 FBLN2P98095 1184 aa16.07■□□□□ 0.16
USP3-206ENST00000558157 EFCAB5A4FU69 1503 aa16.04■□□□□ 0.16
USP3-206ENST00000558157 NUP160Q12769 1436 aa16.03■□□□□ 0.16
USP3-206ENST00000558157 VPS8Q8N3P4 1428 aa16.02■□□□□ 0.16
USP3-206ENST00000558157 KIAA0586Q9BVV6 1533 aa16.02■□□□□ 0.16
USP3-206ENST00000558157 SAMD9Q5K651 1589 aa16.02■□□□□ 0.16
USP3-206ENST00000558157 YTHDC1Q96MU7 727 aaKnown RBP15.99■□□□□ 0.15
USP3-206ENST00000558157 FHOD3Q2V2M9 1422 aa15.98■□□□□ 0.15
USP3-206ENST00000558157 UGGT2Q9NYU1 1516 aa15.97■□□□□ 0.15
USP3-206ENST00000558157 P3H3Q8IVL6 736 aa15.96■□□□□ 0.15
USP3-206ENST00000558157 MIER1Q8N108 512 aa15.95■□□□□ 0.14
USP3-206ENST00000558157 KIAA0556O60303 1618 aa15.92■□□□□ 0.14
USP3-206ENST00000558157 DISP1Q96F81 1524 aa15.91■□□□□ 0.14
USP3-206ENST00000558157 PCF11O94913 1555 aaKnown RBP15.9■□□□□ 0.14
USP3-206ENST00000558157 SUPT16HQ9Y5B9 1047 aaKnown RBP15.89■□□□□ 0.13
USP3-206ENST00000558157 CLASP1Q7Z460 1538 aa15.88■□□□□ 0.13
USP3-206ENST00000558157 TSHZ2Q9NRE2 1034 aa15.87■□□□□ 0.13
USP3-206ENST00000558157 FMN1Q68DA7 1419 aa15.86■□□□□ 0.13
USP3-206ENST00000558157 SHROOM2Q13796 1616 aa15.86■□□□□ 0.13
USP3-206ENST00000558157 JPH4Q96JJ6 628 aa15.85■□□□□ 0.13
USP3-206ENST00000558157 FYCO1Q9BQS8 1478 aa15.83■□□□□ 0.13
USP3-206ENST00000558157 CASKIN1Q8WXD9 1431 aa15.82■□□□□ 0.12
USP3-206ENST00000558157 CARMIL2Q6F5E8 1435 aa15.82■□□□□ 0.12
USP3-206ENST00000558157 PRG4Q92954 1404 aaPredicted RBP15.81■□□□□ 0.12
USP3-206ENST00000558157 CFAP43Q8NDM7 1665 aa15.8■□□□□ 0.12
USP3-206ENST00000558157 APLP2Q06481 763 aa15.79■□□□□ 0.12
USP3-206ENST00000558157 TIAM1Q13009 1591 aa15.79■□□□□ 0.12
USP3-206ENST00000558157 LRRIQ1Q96JM4 1722 aa15.79■□□□□ 0.12
USP3-206ENST00000558157 ERCC6L2Q5T890 1561 aa15.77■□□□□ 0.11
USP3-206ENST00000558157 HECW1Q76N89 1606 aa15.76■□□□□ 0.11
USP3-206ENST00000558157 ATP1B4Q9UN42 357 aaPredicted RBP15.76■□□□□ 0.11
USP3-206ENST00000558157 MAP3K1Q13233 1512 aa15.75■□□□□ 0.11
USP3-206ENST00000558157 RAPGEF6Q8TEU7 1601 aa15.74■□□□□ 0.11
USP3-206ENST00000558157 KANK4Q5T7N3 995 aaPredicted RBP15.72■□□□□ 0.11
USP3-206ENST00000558157 OSCARQ8IYS5 282 aa15.7■□□□□ 0.1
USP3-206ENST00000558157 PLB1Q6P1J6 1458 aa15.7■□□□□ 0.1
USP3-206ENST00000558157 CCDC18Q5T9S5 1454 aa15.69■□□□□ 0.1
USP3-206ENST00000558157 LRRC9Q6ZRR7 1453 aa15.69■□□□□ 0.1
USP3-206ENST00000558157 ABCA8O94911 1581 aa15.68■□□□□ 0.1
USP3-206ENST00000558157 NUP153P49790 1475 aaKnown RBP15.68■□□□□ 0.1
USP3-206ENST00000558157 EPRSP07814 1512 aaKnown RBP15.68■□□□□ 0.1
USP3-206ENST00000558157 CDK13Q14004 1512 aaKnown RBP15.68■□□□□ 0.1
USP3-206ENST00000558157 PTPRGP23470 1445 aa15.67■□□□□ 0.1
USP3-206ENST00000558157 ARID3CA6NKF2 412 aa15.64■□□□□ 0.09
USP3-206ENST00000558157 MAGI3Q5TCQ9 1506 aa15.63■□□□□ 0.09
USP3-206ENST00000558157 EHBP1L1Q8N3D4 1523 aa15.61■□□□□ 0.09
USP3-206ENST00000558157 MTUS2Q5JR59 1369 aa15.6■□□□□ 0.09
USP3-206ENST00000558157 UACAQ9BZF9 1416 aa15.59■□□□□ 0.09
USP3-206ENST00000558157 PRKCSHP14314 528 aaPredicted RBP15.58■□□□□ 0.09
USP3-206ENST00000558157 ABCC2Q92887 1545 aa15.58■□□□□ 0.08
USP3-206ENST00000558157 ERICH6Q7L0X2 663 aa15.57■□□□□ 0.08
USP3-206ENST00000558157 SUPT6HQ7KZ85 1726 aaKnown RBP15.56■□□□□ 0.08
USP3-206ENST00000558157 ATP10BO94823 1461 aa15.55■□□□□ 0.08
USP3-206ENST00000558157 HNRNPUL2Q1KMD3 747 aaKnown RBP15.54■□□□□ 0.08
USP3-206ENST00000558157 PHLDB1Q86UU1 1377 aa15.54■□□□□ 0.08
USP3-206ENST00000558157 MYT1LQ9UL68 1186 aa15.54■□□□□ 0.08
USP3-206ENST00000558157 NCOA2Q15596 1464 aa15.53■□□□□ 0.08
USP3-206ENST00000558157 UHRF1BP1LA0JNW5 1464 aa15.53■□□□□ 0.08
USP3-206ENST00000558157 ARHGEF11O15085 1522 aa15.52■□□□□ 0.08
USP3-206ENST00000558157 ADCY10Q96PN6 1610 aa15.52■□□□□ 0.07
USP3-206ENST00000558157 RRBP1Q9P2E9 1410 aaKnown RBP15.51■□□□□ 0.07
USP3-206ENST00000558157 ZCCHC11Q5TAX3 1644 aaKnown RBP15.5■□□□□ 0.07
USP3-206ENST00000558157 TROQ12816 1431 aaPredicted RBP15.5■□□□□ 0.07
USP3-206ENST00000558157 RBM19Q9Y4C8 960 aaKnown RBP15.49■□□□□ 0.07
USP3-206ENST00000558157 CDK11AQ9UQ88 783 aaPredicted RBP15.48■□□□□ 0.07
USP3-206ENST00000558157 KIF14Q15058 1648 aa15.48■□□□□ 0.07
USP3-206ENST00000558157 RIMBP3CA6NJZ7 1639 aa15.47■□□□□ 0.07
USP3-206ENST00000558157 RIMBP3BA6NNM3 1639 aa15.47■□□□□ 0.07
USP3-206ENST00000558157 RIMBP3Q9UFD9 1639 aa15.47■□□□□ 0.07
USP3-206ENST00000558157 KDM5BQ9UGL1 1544 aa15.47■□□□□ 0.07
USP3-206ENST00000558157 CCNB3Q8WWL7 1395 aa15.46■□□□□ 0.07
USP3-206ENST00000558157 MYOM3Q5VTT5 1437 aa15.45■□□□□ 0.06
USP3-206ENST00000558157 FGD6Q6ZV73 1430 aa15.43■□□□□ 0.06
USP3-206ENST00000558157 PLEKHD1A6NEE1 506 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms