RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 VPS8Q8N3P4 1428 aa26.17■■□□□ 1.78
LDLR-206ENST00000557958 MAGI1Q96QZ7 1491 aaPredicted RBP26.13■■□□□ 1.77
LDLR-206ENST00000557958 SYNJ2O15056 1496 aa26.07■■□□□ 1.76
LDLR-206ENST00000557958 PPARGC1BQ86YN6 1023 aaKnown RBP26.04■■□□□ 1.76
LDLR-206ENST00000557958 GRIN2AQ12879 1464 aa26.03■■□□□ 1.76
LDLR-206ENST00000557958 APLP2Q06481 763 aa26.02■■□□□ 1.76
LDLR-206ENST00000557958 P3H3Q8IVL6 736 aa26.01■■□□□ 1.75
LDLR-206ENST00000557958 ARAP1Q96P48 1450 aa26■■□□□ 1.75
LDLR-206ENST00000557958 HRCP23327 699 aa25.99■■□□□ 1.75
LDLR-206ENST00000557958 CTTNBP2Q8WZ74 1663 aa25.97■■□□□ 1.75
LDLR-206ENST00000557958 ARHGAP35Q9NRY4 1499 aa25.95■■□□□ 1.74
LDLR-206ENST00000557958 CEP170Q5SW79 1584 aa25.86■■□□□ 1.73
LDLR-206ENST00000557958 KIAA0586Q9BVV6 1533 aa25.85■■□□□ 1.73
LDLR-206ENST00000557958 IQGAP2Q13576 1575 aa25.85■■□□□ 1.73
LDLR-206ENST00000557958 CHD1O14646 1710 aa25.84■■□□□ 1.73
LDLR-206ENST00000557958 EFCAB5A4FU69 1503 aa25.83■■□□□ 1.73
LDLR-206ENST00000557958 TTBK1Q5TCY1 1321 aaPredicted RBP25.82■■□□□ 1.72
LDLR-206ENST00000557958 NUP160Q12769 1436 aa25.82■■□□□ 1.72
LDLR-206ENST00000557958 FHOD3Q2V2M9 1422 aa25.8■■□□□ 1.72
LDLR-206ENST00000557958 JPH4Q96JJ6 628 aa25.77■■□□□ 1.72
LDLR-206ENST00000557958 ATP1B4Q9UN42 357 aaPredicted RBP25.77■■□□□ 1.72
LDLR-206ENST00000557958 UGGT2Q9NYU1 1516 aa25.69■■□□□ 1.7
LDLR-206ENST00000557958 SAMD9Q5K651 1589 aa25.68■■□□□ 1.7
LDLR-206ENST00000557958 MAP3K1Q13233 1512 aa25.67■■□□□ 1.7
LDLR-206ENST00000557958 ZEB1P37275 1124 aaPredicted RBP25.66■■□□□ 1.7
LDLR-206ENST00000557958 FMN1Q68DA7 1419 aa25.62■■□□□ 1.69
LDLR-206ENST00000557958 DISP1Q96F81 1524 aa25.62■■□□□ 1.69
LDLR-206ENST00000557958 OSCARQ8IYS5 282 aa25.61■■□□□ 1.69
LDLR-206ENST00000557958 CARMIL2Q6F5E8 1435 aa25.6■■□□□ 1.69
LDLR-206ENST00000557958 FYCO1Q9BQS8 1478 aa25.59■■□□□ 1.69
LDLR-206ENST00000557958 PRG4Q92954 1404 aaPredicted RBP25.59■■□□□ 1.69
LDLR-206ENST00000557958 TIAM1Q13009 1591 aa25.58■■□□□ 1.69
LDLR-206ENST00000557958 KIAA0556O60303 1618 aa25.58■■□□□ 1.69
LDLR-206ENST00000557958 PCF11O94913 1555 aaKnown RBP25.56■■□□□ 1.68
LDLR-206ENST00000557958 CASKIN1Q8WXD9 1431 aa25.55■■□□□ 1.68
LDLR-206ENST00000557958 KANK4Q5T7N3 995 aaPredicted RBP25.54■■□□□ 1.68
LDLR-206ENST00000557958 ARID3CA6NKF2 412 aa25.51■■□□□ 1.67
LDLR-206ENST00000557958 CLASP1Q7Z460 1538 aa25.5■■□□□ 1.67
LDLR-206ENST00000557958 CFAP43Q8NDM7 1665 aa25.5■■□□□ 1.67
LDLR-206ENST00000557958 LRRC9Q6ZRR7 1453 aa25.46■■□□□ 1.67
LDLR-206ENST00000557958 SHROOM2Q13796 1616 aa25.43■■□□□ 1.66
LDLR-206ENST00000557958 ERCC6L2Q5T890 1561 aa25.42■■□□□ 1.66
LDLR-206ENST00000557958 RRBP1Q9P2E9 1410 aaKnown RBP25.42■■□□□ 1.66
LDLR-206ENST00000557958 PTPRGP23470 1445 aa25.41■■□□□ 1.66
LDLR-206ENST00000557958 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.4■■□□□ 1.66
LDLR-206ENST00000557958 HNRNPUL2Q1KMD3 747 aaKnown RBP25.4■■□□□ 1.66
LDLR-206ENST00000557958 CCER1Q8TC90 406 aaPredicted RBP25.39■■□□□ 1.66
LDLR-206ENST00000557958 PLB1Q6P1J6 1458 aa25.38■■□□□ 1.65
LDLR-206ENST00000557958 CCNB3Q8WWL7 1395 aa25.34■■□□□ 1.65
LDLR-206ENST00000557958 HECW1Q76N89 1606 aa25.32■■□□□ 1.64
LDLR-206ENST00000557958 RAPGEF6Q8TEU7 1601 aa25.31■■□□□ 1.64
LDLR-206ENST00000557958 CCDC18Q5T9S5 1454 aa25.3■■□□□ 1.64
LDLR-206ENST00000557958 EPRSP07814 1512 aaKnown RBP25.27■■□□□ 1.64
LDLR-206ENST00000557958 CDK13Q14004 1512 aaKnown RBP25.27■■□□□ 1.64
LDLR-206ENST00000557958 NUP153P49790 1475 aaKnown RBP25.26■■□□□ 1.63
LDLR-206ENST00000557958 LRRIQ1Q96JM4 1722 aa25.26■■□□□ 1.63
LDLR-206ENST00000557958 MTUS2Q5JR59 1369 aa25.26■■□□□ 1.63
LDLR-206ENST00000557958 UACAQ9BZF9 1416 aa25.21■■□□□ 1.63
LDLR-206ENST00000557958 ABCA8O94911 1581 aa25.21■■□□□ 1.63
LDLR-206ENST00000557958 PHLDB1Q86UU1 1377 aa25.21■■□□□ 1.63
LDLR-206ENST00000557958 EHBP1L1Q8N3D4 1523 aa25.2■■□□□ 1.63
LDLR-206ENST00000557958 CDK11AQ9UQ88 783 aaPredicted RBP25.19■■□□□ 1.62
LDLR-206ENST00000557958 SUPT6HQ7KZ85 1726 aaKnown RBP25.13■■□□□ 1.61
LDLR-206ENST00000557958 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.13■■□□□ 1.61
LDLR-206ENST00000557958 ATP10BO94823 1461 aa25.12■■□□□ 1.61
LDLR-206ENST00000557958 MAGI3Q5TCQ9 1506 aa25.12■■□□□ 1.61
LDLR-206ENST00000557958 PLEKHD1A6NEE1 506 aa25.11■■□□□ 1.61
LDLR-206ENST00000557958 ABCC2Q92887 1545 aa25.08■■□□□ 1.61
LDLR-206ENST00000557958 NCOA2Q15596 1464 aa25.08■■□□□ 1.6
LDLR-206ENST00000557958 ARHGEF11O15085 1522 aa25.07■■□□□ 1.6
LDLR-206ENST00000557958 FGD6Q6ZV73 1430 aa25.06■■□□□ 1.6
LDLR-206ENST00000557958 FAM50AQ14320 339 aaKnown RBP25.06■■□□□ 1.6
LDLR-206ENST00000557958 CYB5RLQ6IPT4 315 aa25.04■■□□□ 1.6
LDLR-206ENST00000557958 MYOM3Q5VTT5 1437 aa25.04■■□□□ 1.6
LDLR-206ENST00000557958 ITGAEP38570 1179 aa25.01■■□□□ 1.59
LDLR-206ENST00000557958 UHRF1BP1LA0JNW5 1464 aa25■■□□□ 1.59
LDLR-206ENST00000557958 TROQ12816 1431 aaPredicted RBP25■■□□□ 1.59
LDLR-206ENST00000557958 CLSPNQ9HAW4 1339 aa24.99■■□□□ 1.59
LDLR-206ENST00000557958 KCNH8Q96L42 1107 aa24.98■■□□□ 1.59
LDLR-206ENST00000557958 NPM1P06748 294 aaKnown RBP eCLIP24.98■■□□□ 1.59
LDLR-206ENST00000557958 ADCY10Q96PN6 1610 aa24.96■■□□□ 1.59
LDLR-206ENST00000557958 RIMBP3CA6NJZ7 1639 aa24.95■■□□□ 1.58
LDLR-206ENST00000557958 RIMBP3BA6NNM3 1639 aa24.95■■□□□ 1.58
LDLR-206ENST00000557958 RIMBP3Q9UFD9 1639 aa24.95■■□□□ 1.58
LDLR-206ENST00000557958 KDM5BQ9UGL1 1544 aa24.92■■□□□ 1.58
LDLR-206ENST00000557958 ZCCHC11Q5TAX3 1644 aaKnown RBP24.92■■□□□ 1.58
LDLR-206ENST00000557958 SETD5Q9C0A6 1442 aa24.91■■□□□ 1.58
LDLR-206ENST00000557958 DHX57Q6P158 1386 aaKnown RBP24.89■■□□□ 1.58
LDLR-206ENST00000557958 MIA2Q96PC5 1412 aa24.89■■□□□ 1.58
LDLR-206ENST00000557958 KIF14Q15058 1648 aa24.88■■□□□ 1.57
LDLR-206ENST00000557958 PTPN23Q9H3S7 1636 aa24.88■■□□□ 1.57
LDLR-206ENST00000557958 RAB3GAP2Q9H2M9 1393 aa24.88■■□□□ 1.57
LDLR-206ENST00000557958 TCOF1Q13428 1488 aaKnown RBP24.86■■□□□ 1.57
LDLR-206ENST00000557958 ZNF777Q9ULD5 760 aaPredicted RBP24.85■■□□□ 1.57
LDLR-206ENST00000557958 CFDP1Q9UEE9 299 aaPredicted RBP24.83■■□□□ 1.57
LDLR-206ENST00000557958 ASXL2Q76L83 1435 aa24.78■■□□□ 1.56
LDLR-206ENST00000557958 ZNF644Q9H582 1327 aaPredicted RBP24.78■■□□□ 1.56
LDLR-206ENST00000557958 GPATCH8Q9UKJ3 1502 aaKnown RBP24.76■■□□□ 1.56
LDLR-206ENST00000557958 ABCC10Q5T3U5 1492 aa24.75■■□□□ 1.55
LDLR-206ENST00000557958 HFM1A2PYH4 1435 aa24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms