RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 SHROOM2Q13796 1616 aa22.6■■□□□ 1.21
SHMT2-234ENST00000557703 RIMBP3CA6NJZ7 1639 aa22.56■■□□□ 1.2
SHMT2-234ENST00000557703 RIMBP3BA6NNM3 1639 aa22.56■■□□□ 1.2
SHMT2-234ENST00000557703 RIMBP3Q9UFD9 1639 aa22.56■■□□□ 1.2
SHMT2-234ENST00000557703 FAM9AQ8IZU1 332 aaPredicted RBP22.55■■□□□ 1.2
SHMT2-234ENST00000557703 KIF21BO75037 1637 aa22.54■■□□□ 1.2
SHMT2-234ENST00000557703 IQGAP2Q13576 1575 aa22.53■■□□□ 1.2
SHMT2-234ENST00000557703 PRG4Q92954 1404 aaPredicted RBP22.51■■□□□ 1.19
SHMT2-234ENST00000557703 CARMIL2Q6F5E8 1435 aa22.48■■□□□ 1.19
SHMT2-234ENST00000557703 CTTNBP2Q8WZ74 1663 aa22.46■■□□□ 1.19
SHMT2-234ENST00000557703 UGGT2Q9NYU1 1516 aa22.45■■□□□ 1.18
SHMT2-234ENST00000557703 GOLGA3Q08378 1498 aa22.43■■□□□ 1.18
SHMT2-234ENST00000557703 ARAP1Q96P48 1450 aa22.43■■□□□ 1.18
SHMT2-234ENST00000557703 CYB5RLQ6IPT4 315 aa22.41■■□□□ 1.18
SHMT2-234ENST00000557703 TNIKQ9UKE5 1360 aa22.36■■□□□ 1.17
SHMT2-234ENST00000557703 UBTFP17480 764 aaKnown RBP22.35■■□□□ 1.17
SHMT2-234ENST00000557703 ERCC6L2Q5T890 1561 aa22.34■■□□□ 1.17
SHMT2-234ENST00000557703 DISP1Q96F81 1524 aa22.33■■□□□ 1.17
SHMT2-234ENST00000557703 PTPRGP23470 1445 aa22.31■■□□□ 1.16
SHMT2-234ENST00000557703 KIAA0556O60303 1618 aa22.28■■□□□ 1.16
SHMT2-234ENST00000557703 EFCAB5A4FU69 1503 aa22.22■■□□□ 1.15
SHMT2-234ENST00000557703 SAMD9Q5K651 1589 aa22.21■■□□□ 1.15
SHMT2-234ENST00000557703 UHRF1BP1LA0JNW5 1464 aa22.17■■□□□ 1.14
SHMT2-234ENST00000557703 NPM1P06748 294 aaKnown RBP eCLIP22.17■■□□□ 1.14
SHMT2-234ENST00000557703 UACAQ9BZF9 1416 aa22.16■■□□□ 1.14
SHMT2-234ENST00000557703 EHMT2Q96KQ7 1210 aa22.12■■□□□ 1.13
SHMT2-234ENST00000557703 ABCC2Q92887 1545 aa22.09■■□□□ 1.13
SHMT2-234ENST00000557703 ADCY10Q96PN6 1610 aa22.07■■□□□ 1.12
SHMT2-234ENST00000557703 P3H3Q8IVL6 736 aa22.07■■□□□ 1.12
SHMT2-234ENST00000557703 FMN1Q68DA7 1419 aa22.06■■□□□ 1.12
SHMT2-234ENST00000557703 TTBK1Q5TCY1 1321 aaPredicted RBP22.06■■□□□ 1.12
SHMT2-234ENST00000557703 ARHGAP35Q9NRY4 1499 aa22.05■■□□□ 1.12
SHMT2-234ENST00000557703 RANGAP1P46060 587 aaPredicted RBP22.05■■□□□ 1.12
SHMT2-234ENST00000557703 ABCA8O94911 1581 aa22.04■■□□□ 1.12
SHMT2-234ENST00000557703 KDM5BQ9UGL1 1544 aa22.03■■□□□ 1.12
SHMT2-234ENST00000557703 FHOD3Q2V2M9 1422 aa22.03■■□□□ 1.12
SHMT2-234ENST00000557703 CLIP1P30622 1438 aa22.02■■□□□ 1.12
SHMT2-234ENST00000557703 PLB1Q6P1J6 1458 aa22.02■■□□□ 1.12
SHMT2-234ENST00000557703 MAPKBP1O60336 1514 aa22.01■■□□□ 1.11
SHMT2-234ENST00000557703 LOC105371045A0A1W2PR82 267 aa21.97■■□□□ 1.11
SHMT2-234ENST00000557703 RAPGEF6Q8TEU7 1601 aa21.95■■□□□ 1.1
SHMT2-234ENST00000557703 CEP162Q5TB80 1403 aa21.94■■□□□ 1.1
SHMT2-234ENST00000557703 TRHP20396 242 aaPredicted RBP21.89■■□□□ 1.09
SHMT2-234ENST00000557703 ATP10BO94823 1461 aa21.88■■□□□ 1.09
SHMT2-234ENST00000557703 ABCC10Q5T3U5 1492 aa21.88■■□□□ 1.09
SHMT2-234ENST00000557703 ASXL2Q76L83 1435 aa21.88■■□□□ 1.09
SHMT2-234ENST00000557703 ZCCHC11Q5TAX3 1644 aaKnown RBP21.88■■□□□ 1.09
SHMT2-234ENST00000557703 NUP153P49790 1475 aaKnown RBP21.87■■□□□ 1.09
SHMT2-234ENST00000557703 CASKIN1Q8WXD9 1431 aa21.85■■□□□ 1.09
SHMT2-234ENST00000557703 HECW1Q76N89 1606 aa21.84■■□□□ 1.09
SHMT2-234ENST00000557703 CDK11AQ9UQ88 783 aaPredicted RBP21.83■■□□□ 1.09
SHMT2-234ENST00000557703 WDR7Q9Y4E6 1490 aa21.83■■□□□ 1.08
SHMT2-234ENST00000557703 PLEKHD1A6NEE1 506 aa21.81■■□□□ 1.08
SHMT2-234ENST00000557703 FYCO1Q9BQS8 1478 aa21.81■■□□□ 1.08
SHMT2-234ENST00000557703 FAM69CQ0P6D2 419 aa21.8■■□□□ 1.08
SHMT2-234ENST00000557703 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.79■■□□□ 1.08
SHMT2-234ENST00000557703 HNRNPUL2Q1KMD3 747 aaKnown RBP21.79■■□□□ 1.08
SHMT2-234ENST00000557703 GLI2P10070 1586 aa21.78■■□□□ 1.08
SHMT2-234ENST00000557703 EPRSP07814 1512 aaKnown RBP21.78■■□□□ 1.08
SHMT2-234ENST00000557703 CCDC18Q5T9S5 1454 aa21.77■■□□□ 1.08
SHMT2-234ENST00000557703 DIP2BQ9P265 1576 aa21.77■■□□□ 1.08
SHMT2-234ENST00000557703 ATP1B4Q9UN42 357 aaPredicted RBP21.75■■□□□ 1.07
SHMT2-234ENST00000557703 KIF13AQ9H1H9 1805 aa21.72■■□□□ 1.07
SHMT2-234ENST00000557703 VPS8Q8N3P4 1428 aa21.72■■□□□ 1.07
SHMT2-234ENST00000557703 PCF11O94913 1555 aaKnown RBP21.7■■□□□ 1.06
SHMT2-234ENST00000557703 ARID3CA6NKF2 412 aa21.69■■□□□ 1.06
SHMT2-234ENST00000557703 KCNH8Q96L42 1107 aa21.68■■□□□ 1.06
SHMT2-234ENST00000557703 CDK13Q14004 1512 aaKnown RBP21.65■■□□□ 1.06
SHMT2-234ENST00000557703 TROQ12816 1431 aaPredicted RBP21.63■■□□□ 1.05
SHMT2-234ENST00000557703 CFAP43Q8NDM7 1665 aa21.63■■□□□ 1.05
SHMT2-234ENST00000557703 TEX14Q8IWB6 1497 aa21.62■■□□□ 1.05
SHMT2-234ENST00000557703 CD109Q6YHK3 1445 aa21.62■■□□□ 1.05
SHMT2-234ENST00000557703 ABCA9Q8IUA7 1624 aa21.61■■□□□ 1.05
SHMT2-234ENST00000557703 MAP3K4Q9Y6R4 1608 aa21.61■■□□□ 1.05
SHMT2-234ENST00000557703 MAGI3Q5TCQ9 1506 aa21.6■■□□□ 1.05
SHMT2-234ENST00000557703 PHLDB1Q86UU1 1377 aa21.6■■□□□ 1.05
SHMT2-234ENST00000557703 MAP3K1Q13233 1512 aa21.6■■□□□ 1.05
SHMT2-234ENST00000557703 LRRIQ1Q96JM4 1722 aa21.57■■□□□ 1.04
SHMT2-234ENST00000557703 APLP2Q06481 763 aa21.55■■□□□ 1.04
SHMT2-234ENST00000557703 MTUS2Q5JR59 1369 aa21.53■■□□□ 1.04
SHMT2-234ENST00000557703 KIF14Q15058 1648 aa21.52■■□□□ 1.04
SHMT2-234ENST00000557703 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.52■■□□□ 1.04
SHMT2-234ENST00000557703 ARAP3Q8WWN8 1544 aa21.5■■□□□ 1.03
SHMT2-234ENST00000557703 TSPOAP1O95153 1857 aa21.49■■□□□ 1.03
SHMT2-234ENST00000557703 PLCH2O75038 1416 aa21.48■■□□□ 1.03
SHMT2-234ENST00000557703 NEO1Q92859 1461 aa21.48■■□□□ 1.03
SHMT2-234ENST00000557703 TIAM1Q13009 1591 aa21.48■■□□□ 1.03
SHMT2-234ENST00000557703 PPRC1Q5VV67 1664 aaKnown RBP21.47■■□□□ 1.03
SHMT2-234ENST00000557703 EHBP1L1Q8N3D4 1523 aa21.47■■□□□ 1.03
SHMT2-234ENST00000557703 EFCAB2Q5VUJ9 269 aa21.44■■□□□ 1.02
SHMT2-234ENST00000557703 CFAP74Q9C0B2 1584 aa21.43■■□□□ 1.02
SHMT2-234ENST00000557703 TTC37Q6PGP7 1564 aa21.42■■□□□ 1.02
SHMT2-234ENST00000557703 LRRC9Q6ZRR7 1453 aa21.42■■□□□ 1.02
SHMT2-234ENST00000557703 FANCAO15360 1455 aa21.4■■□□□ 1.02
SHMT2-234ENST00000557703 MYO5CQ9NQX4 1742 aa21.4■■□□□ 1.02
SHMT2-234ENST00000557703 CCNB3Q8WWL7 1395 aa21.37■■□□□ 1.01
SHMT2-234ENST00000557703 KDM6BO15054 1643 aa21.37■■□□□ 1.01
SHMT2-234ENST00000557703 SUPT6HQ7KZ85 1726 aaKnown RBP21.36■■□□□ 1.01
SHMT2-234ENST00000557703 AKNAQ7Z591 1439 aa21.36■■□□□ 1.01
SHMT2-234ENST00000557703 GPATCH8Q9UKJ3 1502 aaKnown RBP21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms