RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 RIMBP3Q9UFD9 1639 aa24.78■■□□□ 1.56
VIPAS39-210ENST00000557466 SHROOM2Q13796 1616 aa24.77■■□□□ 1.56
VIPAS39-210ENST00000557466 ARHGEF11O15085 1522 aa24.76■■□□□ 1.55
VIPAS39-210ENST00000557466 CTTNBP2Q8WZ74 1663 aa24.73■■□□□ 1.55
VIPAS39-210ENST00000557466 KIF21BO75037 1637 aa24.72■■□□□ 1.55
VIPAS39-210ENST00000557466 KIAA0586Q9BVV6 1533 aa24.72■■□□□ 1.55
VIPAS39-210ENST00000557466 IQGAP2Q13576 1575 aa24.67■■□□□ 1.54
VIPAS39-210ENST00000557466 ERCC6L2Q5T890 1561 aa24.66■■□□□ 1.54
VIPAS39-210ENST00000557466 ARAP1Q96P48 1450 aa24.59■■□□□ 1.53
VIPAS39-210ENST00000557466 JPH4Q96JJ6 628 aa24.58■■□□□ 1.53
VIPAS39-210ENST00000557466 PRG4Q92954 1404 aaPredicted RBP24.58■■□□□ 1.53
VIPAS39-210ENST00000557466 GOLGA3Q08378 1498 aa24.53■■□□□ 1.52
VIPAS39-210ENST00000557466 UGGT2Q9NYU1 1516 aa24.53■■□□□ 1.52
VIPAS39-210ENST00000557466 DISP1Q96F81 1524 aa24.46■■□□□ 1.51
VIPAS39-210ENST00000557466 KIAA0556O60303 1618 aa24.46■■□□□ 1.51
VIPAS39-210ENST00000557466 EHMT2Q96KQ7 1210 aa24.45■■□□□ 1.5
VIPAS39-210ENST00000557466 CARMIL2Q6F5E8 1435 aa24.42■■□□□ 1.5
VIPAS39-210ENST00000557466 CYB5RLQ6IPT4 315 aa24.41■■□□□ 1.5
VIPAS39-210ENST00000557466 SAMD9Q5K651 1589 aa24.38■■□□□ 1.49
VIPAS39-210ENST00000557466 UBTFP17480 764 aaKnown RBP24.35■■□□□ 1.49
VIPAS39-210ENST00000557466 TNIKQ9UKE5 1360 aa24.33■■□□□ 1.49
VIPAS39-210ENST00000557466 PTPRGP23470 1445 aa24.28■■□□□ 1.48
VIPAS39-210ENST00000557466 EFCAB5A4FU69 1503 aa24.28■■□□□ 1.48
VIPAS39-210ENST00000557466 ADCY10Q96PN6 1610 aa24.26■■□□□ 1.47
VIPAS39-210ENST00000557466 RANGAP1P46060 587 aaPredicted RBP24.25■■□□□ 1.47
VIPAS39-210ENST00000557466 TTBK1Q5TCY1 1321 aaPredicted RBP24.24■■□□□ 1.47
VIPAS39-210ENST00000557466 P3H3Q8IVL6 736 aa24.2■■□□□ 1.46
VIPAS39-210ENST00000557466 ARHGAP35Q9NRY4 1499 aa24.19■■□□□ 1.46
VIPAS39-210ENST00000557466 FHOD3Q2V2M9 1422 aa24.18■■□□□ 1.46
VIPAS39-210ENST00000557466 ABCA8O94911 1581 aa24.16■■□□□ 1.46
VIPAS39-210ENST00000557466 ABCC2Q92887 1545 aa24.16■■□□□ 1.46
VIPAS39-210ENST00000557466 UACAQ9BZF9 1416 aa24.15■■□□□ 1.46
VIPAS39-210ENST00000557466 UHRF1BP1LA0JNW5 1464 aa24.14■■□□□ 1.46
VIPAS39-210ENST00000557466 PLB1Q6P1J6 1458 aa24.14■■□□□ 1.46
VIPAS39-210ENST00000557466 LOC105371045A0A1W2PR82 267 aa24.12■■□□□ 1.45
VIPAS39-210ENST00000557466 RAPGEF6Q8TEU7 1601 aa24.1■■□□□ 1.45
VIPAS39-210ENST00000557466 CLIP1P30622 1438 aa24.08■■□□□ 1.44
VIPAS39-210ENST00000557466 ZCCHC11Q5TAX3 1644 aaKnown RBP24.06■■□□□ 1.44
VIPAS39-210ENST00000557466 CEP162Q5TB80 1403 aa24.04■■□□□ 1.44
VIPAS39-210ENST00000557466 MAPKBP1O60336 1514 aa24.03■■□□□ 1.44
VIPAS39-210ENST00000557466 KDM5BQ9UGL1 1544 aa24.03■■□□□ 1.44
VIPAS39-210ENST00000557466 FMN1Q68DA7 1419 aa23.99■■□□□ 1.43
VIPAS39-210ENST00000557466 NPM1P06748 294 aaKnown RBP eCLIP23.98■■□□□ 1.43
VIPAS39-210ENST00000557466 NUP153P49790 1475 aaKnown RBP23.97■■□□□ 1.43
VIPAS39-210ENST00000557466 PCF11O94913 1555 aaKnown RBP23.95■■□□□ 1.42
VIPAS39-210ENST00000557466 HECW1Q76N89 1606 aa23.94■■□□□ 1.42
VIPAS39-210ENST00000557466 KIF13AQ9H1H9 1805 aa23.92■■□□□ 1.42
VIPAS39-210ENST00000557466 LRRIQ1Q96JM4 1722 aa23.9■■□□□ 1.42
VIPAS39-210ENST00000557466 ATP10BO94823 1461 aa23.9■■□□□ 1.42
VIPAS39-210ENST00000557466 ASXL2Q76L83 1435 aa23.9■■□□□ 1.42
VIPAS39-210ENST00000557466 DIP2BQ9P265 1576 aa23.89■■□□□ 1.41
VIPAS39-210ENST00000557466 ARID3CA6NKF2 412 aa23.88■■□□□ 1.41
VIPAS39-210ENST00000557466 ABCC10Q5T3U5 1492 aa23.85■■□□□ 1.41
VIPAS39-210ENST00000557466 CASKIN1Q8WXD9 1431 aa23.84■■□□□ 1.41
VIPAS39-210ENST00000557466 CDK13Q14004 1512 aaKnown RBP23.84■■□□□ 1.41
VIPAS39-210ENST00000557466 FYCO1Q9BQS8 1478 aa23.83■■□□□ 1.41
VIPAS39-210ENST00000557466 WDR7Q9Y4E6 1490 aa23.83■■□□□ 1.41
VIPAS39-210ENST00000557466 TRHP20396 242 aaPredicted RBP23.83■■□□□ 1.41
VIPAS39-210ENST00000557466 EPRSP07814 1512 aaKnown RBP23.82■■□□□ 1.4
VIPAS39-210ENST00000557466 ATP1B4Q9UN42 357 aaPredicted RBP23.77■■□□□ 1.4
VIPAS39-210ENST00000557466 GLI2P10070 1586 aa23.77■■□□□ 1.4
VIPAS39-210ENST00000557466 CCDC18Q5T9S5 1454 aa23.75■■□□□ 1.39
VIPAS39-210ENST00000557466 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.74■■□□□ 1.39
VIPAS39-210ENST00000557466 HNRNPUL2Q1KMD3 747 aaKnown RBP23.74■■□□□ 1.39
VIPAS39-210ENST00000557466 VPS8Q8N3P4 1428 aa23.74■■□□□ 1.39
VIPAS39-210ENST00000557466 FAM69CQ0P6D2 419 aa23.72■■□□□ 1.39
VIPAS39-210ENST00000557466 MAP3K4Q9Y6R4 1608 aa23.71■■□□□ 1.39
VIPAS39-210ENST00000557466 TSPOAP1O95153 1857 aa23.7■■□□□ 1.38
VIPAS39-210ENST00000557466 CFAP43Q8NDM7 1665 aa23.68■■□□□ 1.38
VIPAS39-210ENST00000557466 PPRC1Q5VV67 1664 aaKnown RBP23.67■■□□□ 1.38
VIPAS39-210ENST00000557466 ABCA9Q8IUA7 1624 aa23.66■■□□□ 1.38
VIPAS39-210ENST00000557466 MAGI3Q5TCQ9 1506 aa23.64■■□□□ 1.38
VIPAS39-210ENST00000557466 KCNH8Q96L42 1107 aa23.64■■□□□ 1.37
VIPAS39-210ENST00000557466 PLEKHD1A6NEE1 506 aa23.63■■□□□ 1.37
VIPAS39-210ENST00000557466 KIF14Q15058 1648 aa23.62■■□□□ 1.37
VIPAS39-210ENST00000557466 TROQ12816 1431 aaPredicted RBP23.61■■□□□ 1.37
VIPAS39-210ENST00000557466 TTC37Q6PGP7 1564 aa23.6■■□□□ 1.37
VIPAS39-210ENST00000557466 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.59■■□□□ 1.37
VIPAS39-210ENST00000557466 TIAM1Q13009 1591 aa23.59■■□□□ 1.37
VIPAS39-210ENST00000557466 CDK11AQ9UQ88 783 aaPredicted RBP23.58■■□□□ 1.37
VIPAS39-210ENST00000557466 CD109Q6YHK3 1445 aa23.55■■□□□ 1.36
VIPAS39-210ENST00000557466 EHBP1L1Q8N3D4 1523 aa23.53■■□□□ 1.36
VIPAS39-210ENST00000557466 MYO5CQ9NQX4 1742 aa23.51■■□□□ 1.35
VIPAS39-210ENST00000557466 TEX14Q8IWB6 1497 aa23.5■■□□□ 1.35
VIPAS39-210ENST00000557466 MAP3K1Q13233 1512 aa23.5■■□□□ 1.35
VIPAS39-210ENST00000557466 MTUS2Q5JR59 1369 aa23.48■■□□□ 1.35
VIPAS39-210ENST00000557466 CDC42BPAQ5VT25 1732 aa23.45■■□□□ 1.34
VIPAS39-210ENST00000557466 KDM6BO15054 1643 aa23.44■■□□□ 1.34
VIPAS39-210ENST00000557466 PREX2Q70Z35 1606 aa23.44■■□□□ 1.34
VIPAS39-210ENST00000557466 LRRC9Q6ZRR7 1453 aa23.43■■□□□ 1.34
VIPAS39-210ENST00000557466 SUPT6HQ7KZ85 1726 aaKnown RBP23.43■■□□□ 1.34
VIPAS39-210ENST00000557466 CFAP74Q9C0B2 1584 aa23.42■■□□□ 1.34
VIPAS39-210ENST00000557466 CDC42BPBQ9Y5S2 1711 aa23.42■■□□□ 1.34
VIPAS39-210ENST00000557466 ARAP3Q8WWN8 1544 aa23.4■■□□□ 1.34
VIPAS39-210ENST00000557466 PLCH2O75038 1416 aa23.39■■□□□ 1.33
VIPAS39-210ENST00000557466 FANCAO15360 1455 aa23.37■■□□□ 1.33
VIPAS39-210ENST00000557466 NEO1Q92859 1461 aa23.37■■□□□ 1.33
VIPAS39-210ENST00000557466 ITSN2Q9NZM3 1697 aa23.35■■□□□ 1.33
VIPAS39-210ENST00000557466 ARHGAP5Q13017 1502 aa23.35■■□□□ 1.33
VIPAS39-210ENST00000557466 KANK4Q5T7N3 995 aaPredicted RBP23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms