RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CSRNP3Q8WYN3 585 aa22.68■■□□□ 1.22
SHMT2-228ENST00000557302 KIAA0586Q9BVV6 1533 aa22.66■■□□□ 1.22
SHMT2-228ENST00000557302 PRXQ9BXM0 1461 aa22.66■■□□□ 1.22
SHMT2-228ENST00000557302 FAM9AQ8IZU1 332 aaPredicted RBP22.63■■□□□ 1.21
SHMT2-228ENST00000557302 SHROOM2Q13796 1616 aa22.63■■□□□ 1.21
SHMT2-228ENST00000557302 JPH4Q96JJ6 628 aa22.62■■□□□ 1.21
SHMT2-228ENST00000557302 ARAP1Q96P48 1450 aa22.6■■□□□ 1.21
SHMT2-228ENST00000557302 PRG4Q92954 1404 aaPredicted RBP22.58■■□□□ 1.21
SHMT2-228ENST00000557302 CYB5RLQ6IPT4 315 aa22.58■■□□□ 1.21
SHMT2-228ENST00000557302 ERCC6L2Q5T890 1561 aa22.55■■□□□ 1.2
SHMT2-228ENST00000557302 IQGAP2Q13576 1575 aa22.54■■□□□ 1.2
SHMT2-228ENST00000557302 KIF21BO75037 1637 aa22.45■■□□□ 1.18
SHMT2-228ENST00000557302 CTTNBP2Q8WZ74 1663 aa22.45■■□□□ 1.18
SHMT2-228ENST00000557302 CARMIL2Q6F5E8 1435 aa22.43■■□□□ 1.18
SHMT2-228ENST00000557302 UGGT2Q9NYU1 1516 aa22.41■■□□□ 1.18
SHMT2-228ENST00000557302 DISP1Q96F81 1524 aa22.36■■□□□ 1.17
SHMT2-228ENST00000557302 TNIKQ9UKE5 1360 aa22.35■■□□□ 1.17
SHMT2-228ENST00000557302 GOLGA3Q08378 1498 aa22.34■■□□□ 1.17
SHMT2-228ENST00000557302 EHMT2Q96KQ7 1210 aa22.33■■□□□ 1.17
SHMT2-228ENST00000557302 PTPRGP23470 1445 aa22.32■■□□□ 1.16
SHMT2-228ENST00000557302 KIAA0556O60303 1618 aa22.31■■□□□ 1.16
SHMT2-228ENST00000557302 UBTFP17480 764 aaKnown RBP22.3■■□□□ 1.16
SHMT2-228ENST00000557302 TTBK1Q5TCY1 1321 aaPredicted RBP22.3■■□□□ 1.16
SHMT2-228ENST00000557302 RANGAP1P46060 587 aaPredicted RBP22.22■■□□□ 1.15
SHMT2-228ENST00000557302 TRHP20396 242 aaPredicted RBP22.19■■□□□ 1.14
SHMT2-228ENST00000557302 P3H3Q8IVL6 736 aa22.19■■□□□ 1.14
SHMT2-228ENST00000557302 SAMD9Q5K651 1589 aa22.19■■□□□ 1.14
SHMT2-228ENST00000557302 ADCY10Q96PN6 1610 aa22.19■■□□□ 1.14
SHMT2-228ENST00000557302 UACAQ9BZF9 1416 aa22.17■■□□□ 1.14
SHMT2-228ENST00000557302 NPM1P06748 294 aaKnown RBP eCLIP22.17■■□□□ 1.14
SHMT2-228ENST00000557302 UHRF1BP1LA0JNW5 1464 aa22.15■■□□□ 1.14
SHMT2-228ENST00000557302 EFCAB5A4FU69 1503 aa22.14■■□□□ 1.13
SHMT2-228ENST00000557302 ABCC2Q92887 1545 aa22.12■■□□□ 1.13
SHMT2-228ENST00000557302 FHOD3Q2V2M9 1422 aa22.1■■□□□ 1.13
SHMT2-228ENST00000557302 PLB1Q6P1J6 1458 aa22.09■■□□□ 1.13
SHMT2-228ENST00000557302 ABCA8O94911 1581 aa22.06■■□□□ 1.12
SHMT2-228ENST00000557302 MAPKBP1O60336 1514 aa22.05■■□□□ 1.12
SHMT2-228ENST00000557302 ARHGAP35Q9NRY4 1499 aa22.03■■□□□ 1.12
SHMT2-228ENST00000557302 KDM5BQ9UGL1 1544 aa22.03■■□□□ 1.12
SHMT2-228ENST00000557302 RAPGEF6Q8TEU7 1601 aa21.97■■□□□ 1.11
SHMT2-228ENST00000557302 ZCCHC11Q5TAX3 1644 aaKnown RBP21.96■■□□□ 1.11
SHMT2-228ENST00000557302 CLIP1P30622 1438 aa21.96■■□□□ 1.11
SHMT2-228ENST00000557302 ASXL2Q76L83 1435 aa21.96■■□□□ 1.11
SHMT2-228ENST00000557302 FMN1Q68DA7 1419 aa21.95■■□□□ 1.1
SHMT2-228ENST00000557302 LOC105371045A0A1W2PR82 267 aa21.94■■□□□ 1.1
SHMT2-228ENST00000557302 ABCC10Q5T3U5 1492 aa21.94■■□□□ 1.1
SHMT2-228ENST00000557302 ARID3CA6NKF2 412 aa21.92■■□□□ 1.1
SHMT2-228ENST00000557302 NUP153P49790 1475 aaKnown RBP21.9■■□□□ 1.1
SHMT2-228ENST00000557302 FAM69CQ0P6D2 419 aa21.9■■□□□ 1.1
SHMT2-228ENST00000557302 DIP2BQ9P265 1576 aa21.89■■□□□ 1.09
SHMT2-228ENST00000557302 ATP10BO94823 1461 aa21.89■■□□□ 1.09
SHMT2-228ENST00000557302 CEP162Q5TB80 1403 aa21.88■■□□□ 1.09
SHMT2-228ENST00000557302 WDR7Q9Y4E6 1490 aa21.86■■□□□ 1.09
SHMT2-228ENST00000557302 KIF13AQ9H1H9 1805 aa21.86■■□□□ 1.09
SHMT2-228ENST00000557302 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.85■■□□□ 1.09
SHMT2-228ENST00000557302 HNRNPUL2Q1KMD3 747 aaKnown RBP21.85■■□□□ 1.09
SHMT2-228ENST00000557302 EPRSP07814 1512 aaKnown RBP21.82■■□□□ 1.08
SHMT2-228ENST00000557302 ATP1B4Q9UN42 357 aaPredicted RBP21.82■■□□□ 1.08
SHMT2-228ENST00000557302 HECW1Q76N89 1606 aa21.8■■□□□ 1.08
SHMT2-228ENST00000557302 GLI2P10070 1586 aa21.79■■□□□ 1.08
SHMT2-228ENST00000557302 KCNH8Q96L42 1107 aa21.78■■□□□ 1.08
SHMT2-228ENST00000557302 CASKIN1Q8WXD9 1431 aa21.78■■□□□ 1.08
SHMT2-228ENST00000557302 PCF11O94913 1555 aaKnown RBP21.75■■□□□ 1.07
SHMT2-228ENST00000557302 CDK13Q14004 1512 aaKnown RBP21.75■■□□□ 1.07
SHMT2-228ENST00000557302 PLEKHD1A6NEE1 506 aa21.74■■□□□ 1.07
SHMT2-228ENST00000557302 FYCO1Q9BQS8 1478 aa21.73■■□□□ 1.07
SHMT2-228ENST00000557302 CCDC18Q5T9S5 1454 aa21.69■■□□□ 1.06
SHMT2-228ENST00000557302 CDK11AQ9UQ88 783 aaPredicted RBP21.68■■□□□ 1.06
SHMT2-228ENST00000557302 MAP3K4Q9Y6R4 1608 aa21.68■■□□□ 1.06
SHMT2-228ENST00000557302 TSPOAP1O95153 1857 aa21.66■■□□□ 1.06
SHMT2-228ENST00000557302 CD109Q6YHK3 1445 aa21.65■■□□□ 1.06
SHMT2-228ENST00000557302 CFAP43Q8NDM7 1665 aa21.64■■□□□ 1.05
SHMT2-228ENST00000557302 LRRIQ1Q96JM4 1722 aa21.63■■□□□ 1.05
SHMT2-228ENST00000557302 TEX14Q8IWB6 1497 aa21.62■■□□□ 1.05
SHMT2-228ENST00000557302 ABCA9Q8IUA7 1624 aa21.62■■□□□ 1.05
SHMT2-228ENST00000557302 PPRC1Q5VV67 1664 aaKnown RBP21.61■■□□□ 1.05
SHMT2-228ENST00000557302 VPS8Q8N3P4 1428 aa21.61■■□□□ 1.05
SHMT2-228ENST00000557302 TROQ12816 1431 aaPredicted RBP21.6■■□□□ 1.05
SHMT2-228ENST00000557302 MAGI3Q5TCQ9 1506 aa21.6■■□□□ 1.05
SHMT2-228ENST00000557302 SENP3Q9H4L4 574 aaPredicted RBP21.58■■□□□ 1.05
SHMT2-228ENST00000557302 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.55■■□□□ 1.04
SHMT2-228ENST00000557302 KIF14Q15058 1648 aa21.53■■□□□ 1.04
SHMT2-228ENST00000557302 TTC37Q6PGP7 1564 aa21.53■■□□□ 1.04
SHMT2-228ENST00000557302 KDM6BO15054 1643 aa21.52■■□□□ 1.04
SHMT2-228ENST00000557302 MTUS2Q5JR59 1369 aa21.48■■□□□ 1.03
SHMT2-228ENST00000557302 NEO1Q92859 1461 aa21.46■■□□□ 1.03
SHMT2-228ENST00000557302 PHLDB1Q86UU1 1377 aa21.46■■□□□ 1.03
SHMT2-228ENST00000557302 PLCH2O75038 1416 aa21.45■■□□□ 1.02
SHMT2-228ENST00000557302 COL17A1Q9UMD9 1497 aaPredicted RBP21.44■■□□□ 1.02
SHMT2-228ENST00000557302 FANCAO15360 1455 aa21.43■■□□□ 1.02
SHMT2-228ENST00000557302 EHBP1L1Q8N3D4 1523 aa21.43■■□□□ 1.02
SHMT2-228ENST00000557302 TIAM1Q13009 1591 aa21.43■■□□□ 1.02
SHMT2-228ENST00000557302 ARAP3Q8WWN8 1544 aa21.4■■□□□ 1.02
SHMT2-228ENST00000557302 PHF23Q9BUL5 403 aaPredicted RBP21.4■■□□□ 1.02
SHMT2-228ENST00000557302 MYO5CQ9NQX4 1742 aa21.4■■□□□ 1.02
SHMT2-228ENST00000557302 CFAP74Q9C0B2 1584 aa21.4■■□□□ 1.02
SHMT2-228ENST00000557302 MAP3K1Q13233 1512 aa21.39■■□□□ 1.02
SHMT2-228ENST00000557302 APLP2Q06481 763 aa21.39■■□□□ 1.01
SHMT2-228ENST00000557302 EFCAB2Q5VUJ9 269 aa21.39■■□□□ 1.01
SHMT2-228ENST00000557302 AKNAQ7Z591 1439 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms