RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 KLHL34Q8N239 644 aa7.67□□□□□ -1.18
TMEM260-210ENST00000556422 ARHGAP35Q9NRY4 1499 aa7.67□□□□□ -1.18
TMEM260-210ENST00000556422 ARXQ96QS3 562 aa7.66□□□□□ -1.18
TMEM260-210ENST00000556422 TIMELESSQ9UNS1 1208 aa7.66□□□□□ -1.18
TMEM260-210ENST00000556422 ZEB1P37275 1124 aaPredicted RBP7.64□□□□□ -1.19
TMEM260-210ENST00000556422 CARMIL1Q5VZK9 1371 aa7.64□□□□□ -1.19
TMEM260-210ENST00000556422 ABCA5Q8WWZ7 1642 aa7.64□□□□□ -1.19
TMEM260-210ENST00000556422 CUL7Q14999 1698 aa7.63□□□□□ -1.19
TMEM260-210ENST00000556422 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.63□□□□□ -1.19
TMEM260-210ENST00000556422 TULP1O00294 542 aaPredicted RBP7.63□□□□□ -1.19
TMEM260-210ENST00000556422 CTTNBP2Q8WZ74 1663 aa7.62□□□□□ -1.19
TMEM260-210ENST00000556422 PDS5BQ9NTI5 1447 aa7.62□□□□□ -1.19
TMEM260-210ENST00000556422 TARBP1Q13395 1621 aaKnown RBP7.61□□□□□ -1.19
TMEM260-210ENST00000556422 KANK4Q5T7N3 995 aaPredicted RBP7.58□□□□□ -1.2
TMEM260-210ENST00000556422 PBRM1Q86U86 1689 aa7.57□□□□□ -1.2
TMEM260-210ENST00000556422 TIAM1Q13009 1591 aa7.56□□□□□ -1.2
TMEM260-210ENST00000556422 CCER1Q8TC90 406 aaPredicted RBP7.56□□□□□ -1.2
TMEM260-210ENST00000556422 PCF11O94913 1555 aaKnown RBP7.56□□□□□ -1.2
TMEM260-210ENST00000556422 TDRD9Q8NDG6 1382 aaKnown RBP7.56□□□□□ -1.2
TMEM260-210ENST00000556422 GAPVD1Q14C86 1478 aa7.56□□□□□ -1.2
TMEM260-210ENST00000556422 CFAP43Q8NDM7 1665 aa7.56□□□□□ -1.2
TMEM260-210ENST00000556422 MAP3K1Q13233 1512 aa7.55□□□□□ -1.2
TMEM260-210ENST00000556422 EFCAB5A4FU69 1503 aa7.55□□□□□ -1.2
TMEM260-210ENST00000556422 SCAF1Q9H7N4 1312 aaKnown RBP7.54□□□□□ -1.2
TMEM260-210ENST00000556422 RRBP1Q9P2E9 1410 aaKnown RBP7.54□□□□□ -1.2
TMEM260-210ENST00000556422 SAMD9Q5K651 1589 aa7.54□□□□□ -1.2
TMEM260-210ENST00000556422 MRC2Q9UBG0 1479 aa7.54□□□□□ -1.2
TMEM260-210ENST00000556422 LRRIQ1Q96JM4 1722 aa7.53□□□□□ -1.2
TMEM260-210ENST00000556422 DNAJC5Q9H3Z4 198 aa7.53□□□□□ -1.2
TMEM260-210ENST00000556422 HNRNPUL2Q1KMD3 747 aaKnown RBP7.52□□□□□ -1.2
TMEM260-210ENST00000556422 HOMEZQ8IX15 550 aa7.52□□□□□ -1.2
TMEM260-210ENST00000556422 WDR62O43379 1518 aa7.52□□□□□ -1.21
TMEM260-210ENST00000556422 FHOD3Q2V2M9 1422 aa7.52□□□□□ -1.21
TMEM260-210ENST00000556422 LRRC9Q6ZRR7 1453 aa7.51□□□□□ -1.21
TMEM260-210ENST00000556422 ADAMTS12P58397 1594 aa7.51□□□□□ -1.21
TMEM260-210ENST00000556422 FHAD1B1AJZ9 1412 aa7.51□□□□□ -1.21
TMEM260-210ENST00000556422 SNAPC4Q5SXM2 1469 aa7.51□□□□□ -1.21
TMEM260-210ENST00000556422 AMER1Q5JTC6 1135 aaPredicted RBP7.51□□□□□ -1.21
TMEM260-210ENST00000556422 FYCO1Q9BQS8 1478 aa7.5□□□□□ -1.21
TMEM260-210ENST00000556422 AQRO60306 1485 aaKnown RBP eCLIP7.5□□□□□ -1.21
TMEM260-210ENST00000556422 THOC2Q8NI27 1593 aaKnown RBP7.49□□□□□ -1.21
TMEM260-210ENST00000556422 CASKIN1Q8WXD9 1431 aa7.49□□□□□ -1.21
TMEM260-210ENST00000556422 ZNF608Q9ULD9 1512 aaPredicted RBP7.49□□□□□ -1.21
TMEM260-210ENST00000556422 P3H3Q8IVL6 736 aa7.48□□□□□ -1.21
TMEM260-210ENST00000556422 CCNB3Q8WWL7 1395 aa7.48□□□□□ -1.21
TMEM260-210ENST00000556422 PHLDB1Q86UU1 1377 aa7.47□□□□□ -1.21
TMEM260-210ENST00000556422 EIF4G3O43432 1585 aaKnown RBP7.47□□□□□ -1.21
TMEM260-210ENST00000556422 IFT140Q96RY7 1462 aa7.46□□□□□ -1.21
TMEM260-210ENST00000556422 GRIN2BQ13224 1484 aa7.46□□□□□ -1.22
TMEM260-210ENST00000556422 FMN1Q68DA7 1419 aa7.46□□□□□ -1.22
TMEM260-210ENST00000556422 IQGAP2Q13576 1575 aa7.45□□□□□ -1.22
TMEM260-210ENST00000556422 UBE2Q2Q8WVN8 375 aa7.45□□□□□ -1.22
TMEM260-210ENST00000556422 PKNOX2Q96KN3 472 aa7.45□□□□□ -1.22
TMEM260-210ENST00000556422 SENP3Q9H4L4 574 aaPredicted RBP7.45□□□□□ -1.22
TMEM260-210ENST00000556422 DHX57Q6P158 1386 aaKnown RBP7.44□□□□□ -1.22
TMEM260-210ENST00000556422 PDIA4P13667 645 aaKnown RBP7.44□□□□□ -1.22
TMEM260-210ENST00000556422 NEFLP07196 543 aa7.43□□□□□ -1.22
TMEM260-210ENST00000556422 ADRA2BP18089 450 aa7.43□□□□□ -1.22
TMEM260-210ENST00000556422 MAGI3Q5TCQ9 1506 aa7.42□□□□□ -1.22
TMEM260-210ENST00000556422 ERCC6Q03468 1493 aa7.41□□□□□ -1.22
TMEM260-210ENST00000556422 UGGT2Q9NYU1 1516 aa7.41□□□□□ -1.22
TMEM260-210ENST00000556422 PDE4CQ08493 712 aa7.41□□□□□ -1.22
TMEM260-210ENST00000556422 ANO8Q9HCE9 1232 aaPredicted RBP7.4□□□□□ -1.22
TMEM260-210ENST00000556422 GRIN2AQ12879 1464 aa7.4□□□□□ -1.23
TMEM260-210ENST00000556422 ARHGEF11O15085 1522 aa7.39□□□□□ -1.23
TMEM260-210ENST00000556422 C14orf37Q86TY3 774 aa7.39□□□□□ -1.23
TMEM260-210ENST00000556422 KIAA0556O60303 1618 aa7.39□□□□□ -1.23
TMEM260-210ENST00000556422 HECW1Q76N89 1606 aa7.39□□□□□ -1.23
TMEM260-210ENST00000556422 SUPT6HQ7KZ85 1726 aaKnown RBP7.39□□□□□ -1.23
TMEM260-210ENST00000556422 CLSPNQ9HAW4 1339 aa7.39□□□□□ -1.23
TMEM260-210ENST00000556422 MAPKBP1O60336 1514 aa7.39□□□□□ -1.23
TMEM260-210ENST00000556422 DISP1Q96F81 1524 aa7.39□□□□□ -1.23
TMEM260-210ENST00000556422 ATP1B4Q9UN42 357 aaPredicted RBP7.39□□□□□ -1.23
TMEM260-210ENST00000556422 RAB3GAP2Q9H2M9 1393 aa7.39□□□□□ -1.23
TMEM260-210ENST00000556422 EHBP1L1Q8N3D4 1523 aa7.39□□□□□ -1.23
TMEM260-210ENST00000556422 NPM2Q86SE8 214 aaKnown RBP7.38□□□□□ -1.23
TMEM260-210ENST00000556422 CEP170Q5SW79 1584 aa7.38□□□□□ -1.23
TMEM260-210ENST00000556422 FGD6Q6ZV73 1430 aa7.38□□□□□ -1.23
TMEM260-210ENST00000556422 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.38□□□□□ -1.23
TMEM260-210ENST00000556422 KIAA0586Q9BVV6 1533 aa7.38□□□□□ -1.23
TMEM260-210ENST00000556422 MAGI1Q96QZ7 1491 aaPredicted RBP7.38□□□□□ -1.23
TMEM260-210ENST00000556422 NCOA2Q15596 1464 aa7.37□□□□□ -1.23
TMEM260-210ENST00000556422 ITGAEP38570 1179 aa7.37□□□□□ -1.23
TMEM260-210ENST00000556422 CCDC18Q5T9S5 1454 aa7.37□□□□□ -1.23
TMEM260-210ENST00000556422 EPRSP07814 1512 aaKnown RBP7.37□□□□□ -1.23
TMEM260-210ENST00000556422 HAP1P54257 671 aaPredicted RBP7.36□□□□□ -1.23
TMEM260-210ENST00000556422 ANP32EQ9BTT0 268 aa7.36□□□□□ -1.23
TMEM260-210ENST00000556422 CDK13Q14004 1512 aaKnown RBP7.36□□□□□ -1.23
TMEM260-210ENST00000556422 PPP6R1Q9UPN7 881 aa7.36□□□□□ -1.23
TMEM260-210ENST00000556422 MTUS2Q5JR59 1369 aa7.36□□□□□ -1.23
TMEM260-210ENST00000556422 TPRNQ4KMQ1 711 aa7.36□□□□□ -1.23
TMEM260-210ENST00000556422 SETD5Q9C0A6 1442 aa7.36□□□□□ -1.23
TMEM260-210ENST00000556422 SYNJ2O15056 1496 aa7.36□□□□□ -1.23
TMEM260-210ENST00000556422 PTPRKQ15262 1439 aa7.35□□□□□ -1.23
TMEM260-210ENST00000556422 TAOK2Q9UL54 1235 aa7.35□□□□□ -1.23
TMEM260-210ENST00000556422 MYOM3Q5VTT5 1437 aa7.35□□□□□ -1.23
TMEM260-210ENST00000556422 PTPN23Q9H3S7 1636 aa7.34□□□□□ -1.23
TMEM260-210ENST00000556422 FAM50AQ14320 339 aaKnown RBP7.34□□□□□ -1.23
TMEM260-210ENST00000556422 ZNF316A6NFI3 1004 aaPredicted RBP7.34□□□□□ -1.23
TMEM260-210ENST00000556422 DIEXFQ68CQ4 756 aaKnown RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms