RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 EFCAB5A4FU69 1503 aa19.81■□□□□ 0.76
SHMT2-222ENST00000555774 POLA1P09884 1462 aaPredicted RBP19.79■□□□□ 0.76
SHMT2-222ENST00000555774 GTF3C3Q9Y5Q9 886 aa19.76■□□□□ 0.75
SHMT2-222ENST00000555774 MIER1Q8N108 512 aa19.76■□□□□ 0.75
SHMT2-222ENST00000555774 AQRO60306 1485 aaKnown RBP eCLIP19.75■□□□□ 0.754e-7■■■■□ 20.7
SHMT2-222ENST00000555774 PCF11O94913 1555 aaKnown RBP19.74■□□□□ 0.75
SHMT2-222ENST00000555774 LAMC3Q9Y6N6 1575 aa19.74■□□□□ 0.75
SHMT2-222ENST00000555774 FYCO1Q9BQS8 1478 aa19.73■□□□□ 0.75
SHMT2-222ENST00000555774 RAD54L2Q9Y4B4 1467 aa19.73■□□□□ 0.75
SHMT2-222ENST00000555774 CTTNBP2Q8WZ74 1663 aa19.7■□□□□ 0.74
SHMT2-222ENST00000555774 CASKIN1Q8WXD9 1431 aa19.7■□□□□ 0.74
SHMT2-222ENST00000555774 WDR97A6NE52 1622 aa19.69■□□□□ 0.74
SHMT2-222ENST00000555774 RAB3GAP2Q9H2M9 1393 aa19.69■□□□□ 0.74
SHMT2-222ENST00000555774 PHLDB1Q86UU1 1377 aa19.68■□□□□ 0.74
SHMT2-222ENST00000555774 SETD5Q9C0A6 1442 aa19.68■□□□□ 0.74
SHMT2-222ENST00000555774 NESP48681 1621 aa19.67■□□□□ 0.74
SHMT2-222ENST00000555774 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.66■□□□□ 0.74
SHMT2-222ENST00000555774 MAPKBP1O60336 1514 aa19.64■□□□□ 0.73
SHMT2-222ENST00000555774 FHOD3Q2V2M9 1422 aa19.64■□□□□ 0.73
SHMT2-222ENST00000555774 FMN1Q68DA7 1419 aa19.63■□□□□ 0.73
SHMT2-222ENST00000555774 URB2Q14146 1524 aaKnown RBP19.63■□□□□ 0.73
SHMT2-222ENST00000555774 ABCA5Q8WWZ7 1642 aa19.62■□□□□ 0.73
SHMT2-222ENST00000555774 ITGAEP38570 1179 aa19.6■□□□□ 0.73
SHMT2-222ENST00000555774 YTHDC1Q96MU7 727 aaKnown RBP19.6■□□□□ 0.73
SHMT2-222ENST00000555774 PDS5BQ9NTI5 1447 aa19.58■□□□□ 0.72
SHMT2-222ENST00000555774 SAMD9Q5K651 1589 aa19.57■□□□□ 0.72
SHMT2-222ENST00000555774 SNAPC4Q5SXM2 1469 aa19.56■□□□□ 0.72
SHMT2-222ENST00000555774 P3H3Q8IVL6 736 aa19.55■□□□□ 0.72
SHMT2-222ENST00000555774 THOC2Q8NI27 1593 aaKnown RBP19.54■□□□□ 0.72
SHMT2-222ENST00000555774 GAPVD1Q14C86 1478 aa19.53■□□□□ 0.72
SHMT2-222ENST00000555774 FAM50AQ14320 339 aaKnown RBP19.53■□□□□ 0.72
SHMT2-222ENST00000555774 TIMELESSQ9UNS1 1208 aa19.53■□□□□ 0.72
SHMT2-222ENST00000555774 FGD6Q6ZV73 1430 aa19.48■□□□□ 0.71
SHMT2-222ENST00000555774 ATP1B4Q9UN42 357 aaPredicted RBP19.48■□□□□ 0.71
SHMT2-222ENST00000555774 KIF21AQ7Z4S6 1674 aa19.48■□□□□ 0.71
SHMT2-222ENST00000555774 GRIN2BQ13224 1484 aa19.46■□□□□ 0.71
SHMT2-222ENST00000555774 TDRD9Q8NDG6 1382 aaKnown RBP19.46■□□□□ 0.71
SHMT2-222ENST00000555774 MTUS2Q5JR59 1369 aa19.44■□□□□ 0.7
SHMT2-222ENST00000555774 TARBP1Q13395 1621 aaKnown RBP19.43■□□□□ 0.7
SHMT2-222ENST00000555774 EHBP1L1Q8N3D4 1523 aa19.42■□□□□ 0.7
SHMT2-222ENST00000555774 SUPT6HQ7KZ85 1726 aaKnown RBP19.39■□□□□ 0.69
SHMT2-222ENST00000555774 HFM1A2PYH4 1435 aa19.39■□□□□ 0.69
SHMT2-222ENST00000555774 CCDC18Q5T9S5 1454 aa19.38■□□□□ 0.69
SHMT2-222ENST00000555774 MYOM3Q5VTT5 1437 aa19.38■□□□□ 0.69
SHMT2-222ENST00000555774 LRRIQ1Q96JM4 1722 aa19.38■□□□□ 0.69
SHMT2-222ENST00000555774 NCOA2Q15596 1464 aa19.38■□□□□ 0.69
SHMT2-222ENST00000555774 ARHGEF11O15085 1522 aa19.35■□□□□ 0.69
SHMT2-222ENST00000555774 PTPN23Q9H3S7 1636 aa19.34■□□□□ 0.69
SHMT2-222ENST00000555774 UACAQ9BZF9 1416 aa19.34■□□□□ 0.69
SHMT2-222ENST00000555774 UGGT2Q9NYU1 1516 aa19.33■□□□□ 0.69
SHMT2-222ENST00000555774 PBRM1Q86U86 1689 aa19.33■□□□□ 0.69
SHMT2-222ENST00000555774 SIN3AQ96ST3 1273 aa19.33■□□□□ 0.69
SHMT2-222ENST00000555774 HECW1Q76N89 1606 aa19.32■□□□□ 0.68
SHMT2-222ENST00000555774 ADAMTS12P58397 1594 aa19.31■□□□□ 0.68
SHMT2-222ENST00000555774 PTPRKQ15262 1439 aa19.3■□□□□ 0.68
SHMT2-222ENST00000555774 IQGAP2Q13576 1575 aa19.29■□□□□ 0.68
SHMT2-222ENST00000555774 PPP1R15AO75807 674 aaPredicted RBP19.29■□□□□ 0.68
SHMT2-222ENST00000555774 TCOF1Q13428 1488 aaKnown RBP19.29■□□□□ 0.68
SHMT2-222ENST00000555774 MRC2Q9UBG0 1479 aa19.28■□□□□ 0.68
SHMT2-222ENST00000555774 NAIPQ13075 1403 aa19.28■□□□□ 0.68
SHMT2-222ENST00000555774 AKNAQ7Z591 1439 aa19.25■□□□□ 0.67
SHMT2-222ENST00000555774 MAGI3Q5TCQ9 1506 aa19.24■□□□□ 0.67
SHMT2-222ENST00000555774 TONSLQ96HA7 1378 aa19.23■□□□□ 0.67
SHMT2-222ENST00000555774 EPRSP07814 1512 aaKnown RBP19.22■□□□□ 0.67
SHMT2-222ENST00000555774 MIA2Q96PC5 1412 aa19.21■□□□□ 0.67
SHMT2-222ENST00000555774 GCC2Q8IWJ2 1684 aa19.21■□□□□ 0.67
SHMT2-222ENST00000555774 DNAJC5BQ9UF47 199 aa19.2■□□□□ 0.66
SHMT2-222ENST00000555774 WDR62O43379 1518 aa19.2■□□□□ 0.66
SHMT2-222ENST00000555774 IFT140Q96RY7 1462 aa19.19■□□□□ 0.66
SHMT2-222ENST00000555774 DDX10Q13206 875 aaKnown RBP19.16■□□□□ 0.66
SHMT2-222ENST00000555774 CCER2I3L3R5 266 aa19.13■□□□□ 0.65
SHMT2-222ENST00000555774 SUPT16HQ9Y5B9 1047 aaKnown RBP19.13■□□□□ 0.65
SHMT2-222ENST00000555774 KIAA0586Q9BVV6 1533 aa19.11■□□□□ 0.65
SHMT2-222ENST00000555774 KDM5BQ9UGL1 1544 aa19.11■□□□□ 0.65
SHMT2-222ENST00000555774 CDK13Q14004 1512 aaKnown RBP19.1■□□□□ 0.65
SHMT2-222ENST00000555774 KIAA0556O60303 1618 aa19.09■□□□□ 0.65
SHMT2-222ENST00000555774 ANP32CO43423 234 aa19.07■□□□□ 0.64
SHMT2-222ENST00000555774 ROCK1Q13464 1354 aa19.06■□□□□ 0.64
SHMT2-222ENST00000555774 KCNH8Q96L42 1107 aa19.06■□□□□ 0.64
SHMT2-222ENST00000555774 DISP1Q96F81 1524 aa19.05■□□□□ 0.64
SHMT2-222ENST00000555774 ZNF608Q9ULD9 1512 aaPredicted RBP19.04■□□□□ 0.64
SHMT2-222ENST00000555774 DENND4BO75064 1496 aaPredicted RBP19.04■□□□□ 0.64
SHMT2-222ENST00000555774 RRP7BPQ9NSQ0 103 aa19.03■□□□□ 0.64
SHMT2-222ENST00000555774 GRIN2AQ12879 1464 aa19.02■□□□□ 0.64
SHMT2-222ENST00000555774 RAPGEF6Q8TEU7 1601 aa19.01■□□□□ 0.63
SHMT2-222ENST00000555774 DNMT1P26358 1616 aaKnown RBP19.01■□□□□ 0.63
SHMT2-222ENST00000555774 NUP153P49790 1475 aaKnown RBP19■□□□□ 0.63
SHMT2-222ENST00000555774 DAPK1P53355 1430 aa19■□□□□ 0.63
SHMT2-222ENST00000555774 KDM6BO15054 1643 aa19■□□□□ 0.63
SHMT2-222ENST00000555774 EIF4G3O43432 1585 aaKnown RBP18.99■□□□□ 0.63
SHMT2-222ENST00000555774 CHIC2Q9UKJ5 165 aa18.99■□□□□ 0.63
SHMT2-222ENST00000555774 HIRIP3Q9BW71 556 aaPredicted RBP18.98■□□□□ 0.63
SHMT2-222ENST00000555774 MYT1Q01538 1121 aa18.97■□□□□ 0.63
SHMT2-222ENST00000555774 MAGI1Q96QZ7 1491 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-222ENST00000555774 CDK11AQ9UQ88 783 aaPredicted RBP18.97■□□□□ 0.63
SHMT2-222ENST00000555774 TRIM52Q96A61 297 aa18.96■□□□□ 0.63
SHMT2-222ENST00000555774 MPHOSPH9Q99550 1183 aa18.96■□□□□ 0.63
SHMT2-222ENST00000555774 ABCC5O15440 1437 aa18.95■□□□□ 0.62
SHMT2-222ENST00000555774 TROQ12816 1431 aaPredicted RBP18.92■□□□□ 0.62
SHMT2-222ENST00000555774 ITSN2Q9NZM3 1697 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms