RNA–Protein interactions for RNA: ENST00000555737.5

RCCD1-204, Transcript of RCC1 domain containing 1, humanhuman

TSL 1 (best)

Gene RCCD1, Length 3,157 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RCCD1-204ENST00000555737 RBM19Q9Y4C8 960 aaKnown RBP25.03■■□□□ 1.6
RCCD1-204ENST00000555737 PHLDB1Q86UU1 1377 aa25.03■■□□□ 1.6
RCCD1-204ENST00000555737 PEG3Q9GZU2 1588 aa25.03■■□□□ 1.6
RCCD1-204ENST00000555737 WDR97A6NE52 1622 aa25.02■■□□□ 1.6
RCCD1-204ENST00000555737 CUX1P39880 1505 aa25.01■■□□□ 1.59
RCCD1-204ENST00000555737 CUX2O14529 1486 aa24.99■■□□□ 1.59
RCCD1-204ENST00000555737 HNRNPUQ00839 825 aaKnown RBP eCLIP24.98■■□□□ 1.59
RCCD1-204ENST00000555737 PPP1R15AO75807 674 aaPredicted RBP24.97■■□□□ 1.59
RCCD1-204ENST00000555737 MAPKBP1O60336 1514 aa24.96■■□□□ 1.59
RCCD1-204ENST00000555737 ERICH3Q5RHP9 1530 aa24.96■■□□□ 1.59
RCCD1-204ENST00000555737 TONSLQ96HA7 1378 aa24.91■■□□□ 1.58
RCCD1-204ENST00000555737 CARMIL1Q5VZK9 1371 aa24.9■■□□□ 1.58
RCCD1-204ENST00000555737 ARID3CA6NKF2 412 aa24.89■■□□□ 1.58
RCCD1-204ENST00000555737 IGF1RP08069 1367 aa24.89■■□□□ 1.57
RCCD1-204ENST00000555737 SENP3-EIF4A1A0A087X0R7 540 aa24.89■■□□□ 1.57
RCCD1-204ENST00000555737 CHIC2Q9UKJ5 165 aa24.88■■□□□ 1.57
RCCD1-204ENST00000555737 BCL11AQ9H165 835 aa24.87■■□□□ 1.57
RCCD1-204ENST00000555737 FHOD3Q2V2M9 1422 aa24.83■■□□□ 1.57
RCCD1-204ENST00000555737 ERICH6Q7L0X2 663 aa24.82■■□□□ 1.56
RCCD1-204ENST00000555737 BIVM-ERCC5R4GMW8 1640 aa24.81■■□□□ 1.56
RCCD1-204ENST00000555737 LRRC9Q6ZRR7 1453 aa24.8■■□□□ 1.56
RCCD1-204ENST00000555737 RRP7BPQ9NSQ0 103 aa24.79■■□□□ 1.56
RCCD1-204ENST00000555737 FAM9BQ8IZU0 186 aa24.77■■□□□ 1.56
RCCD1-204ENST00000555737 POLR3GLQ9BT43 218 aa24.74■■□□□ 1.55
RCCD1-204ENST00000555737 TIAM1Q13009 1591 aa24.74■■□□□ 1.55
RCCD1-204ENST00000555737 CCER2I3L3R5 266 aa24.73■■□□□ 1.55
RCCD1-204ENST00000555737 MSH5O43196 834 aa24.72■■□□□ 1.55
RCCD1-204ENST00000555737 CDK11AQ9UQ88 783 aaPredicted RBP24.71■■□□□ 1.55
RCCD1-204ENST00000555737 FOXD1Q16676 465 aa24.7■■□□□ 1.55
RCCD1-204ENST00000555737 CCDC184Q52MB2 194 aa24.67■■□□□ 1.54
RCCD1-204ENST00000555737 MTUS2Q5JR59 1369 aa24.67■■□□□ 1.54
RCCD1-204ENST00000555737 CFTRP13569 1480 aa24.63■■□□□ 1.53
RCCD1-204ENST00000555737 HSPA5P11021 654 aaKnown RBP24.62■■□□□ 1.53
RCCD1-204ENST00000555737 B4GALNT3Q6L9W6 998 aa24.62■■□□□ 1.53
RCCD1-204ENST00000555737 FGD5Q6ZNL6 1462 aa24.62■■□□□ 1.53
RCCD1-204ENST00000555737 FHAD1B1AJZ9 1412 aa24.62■■□□□ 1.53
RCCD1-204ENST00000555737 NCAPD3P42695 1498 aa24.59■■□□□ 1.53
RCCD1-204ENST00000555737 TIMELESSQ9UNS1 1208 aa24.57■■□□□ 1.52
RCCD1-204ENST00000555737 RAD54L2Q9Y4B4 1467 aa24.57■■□□□ 1.52
RCCD1-204ENST00000555737 PCF11O94913 1555 aaKnown RBP24.56■■□□□ 1.52
RCCD1-204ENST00000555737 MRS2Q9HD23 443 aa24.54■■□□□ 1.52
RCCD1-204ENST00000555737 ZNF326Q5BKZ1 582 aaKnown RBP24.53■■□□□ 1.52
RCCD1-204ENST00000555737 CCDC18Q5T9S5 1454 aa24.53■■□□□ 1.52
RCCD1-204ENST00000555737 WASHC2AQ641Q2 1341 aa24.53■■□□□ 1.52
RCCD1-204ENST00000555737 PTPRKQ15262 1439 aa24.5■■□□□ 1.51
RCCD1-204ENST00000555737 CADPSQ9ULU8 1353 aa24.49■■□□□ 1.51
RCCD1-204ENST00000555737 PRKCSHP14314 528 aaPredicted RBP24.48■■□□□ 1.51
RCCD1-204ENST00000555737 EIF4G2P78344 907 aaKnown RBP eCLIP24.48■■□□□ 1.51
RCCD1-204ENST00000555737 FGD6Q6ZV73 1430 aa24.47■■□□□ 1.51
RCCD1-204ENST00000555737 NBR1Q14596 966 aa24.46■■□□□ 1.51
RCCD1-204ENST00000555737 C11orf95C9JLR9 678 aaPredicted RBP24.45■■□□□ 1.5
RCCD1-204ENST00000555737 AQRO60306 1485 aaKnown RBP eCLIP24.44■■□□□ 1.53e-7■■■■■ 49
RCCD1-204ENST00000555737 L3MBTL2Q969R5 705 aa24.42■■□□□ 1.5
RCCD1-204ENST00000555737 TDRD9Q8NDG6 1382 aaKnown RBP24.42■■□□□ 1.5
RCCD1-204ENST00000555737 HMGXB3Q12766 1538 aa24.4■■□□□ 1.5
RCCD1-204ENST00000555737 PPP4R2Q9NY27 417 aa24.37■■□□□ 1.49
RCCD1-204ENST00000555737 UACAQ9BZF9 1416 aa24.36■■□□□ 1.49
RCCD1-204ENST00000555737 MAP3K1Q13233 1512 aa24.35■■□□□ 1.49
RCCD1-204ENST00000555737 CASKIN1Q8WXD9 1431 aa24.33■■□□□ 1.49
RCCD1-204ENST00000555737 MPHOSPH9Q99550 1183 aa24.32■■□□□ 1.48
RCCD1-204ENST00000555737 SALL2Q9Y467 1007 aaPredicted RBP24.32■■□□□ 1.48
RCCD1-204ENST00000555737 NAIPQ13075 1403 aa24.32■■□□□ 1.48
RCCD1-204ENST00000555737 PRKRIP1Q9H875 184 aaPredicted RBP24.31■■□□□ 1.48
RCCD1-204ENST00000555737 FANCD2Q9BXW9 1451 aa24.3■■□□□ 1.48
RCCD1-204ENST00000555737 HFM1A2PYH4 1435 aa24.28■■□□□ 1.48
RCCD1-204ENST00000555737 FYCO1Q9BQS8 1478 aa24.28■■□□□ 1.48
RCCD1-204ENST00000555737 NCOA2Q15596 1464 aa24.26■■□□□ 1.47
RCCD1-204ENST00000555737 FMN1Q68DA7 1419 aa24.26■■□□□ 1.47
RCCD1-204ENST00000555737 NBPF8Q3BBV2 869 aa24.26■■□□□ 1.47
RCCD1-204ENST00000555737 FANCIQ9NVI1 1328 aa24.26■■□□□ 1.47
RCCD1-204ENST00000555737 NESP48681 1621 aa24.26■■□□□ 1.47
RCCD1-204ENST00000555737 SLC4A1APQ9BWU0 796 aaKnown RBP24.24■■□□□ 1.47
RCCD1-204ENST00000555737 MYOM3Q5VTT5 1437 aa24.21■■□□□ 1.47
RCCD1-204ENST00000555737 CFAP43Q8NDM7 1665 aa24.21■■□□□ 1.47
RCCD1-204ENST00000555737 ZNF777Q9ULD5 760 aaPredicted RBP24.21■■□□□ 1.47
RCCD1-204ENST00000555737 NPM2Q86SE8 214 aaKnown RBP24.2■■□□□ 1.47
RCCD1-204ENST00000555737 CCDC136Q96JN2 1154 aa24.2■■□□□ 1.46
RCCD1-204ENST00000555737 PTPN23Q9H3S7 1636 aa24.2■■□□□ 1.46
RCCD1-204ENST00000555737 PAK3O75914 559 aaPredicted RBP24.19■■□□□ 1.46
RCCD1-204ENST00000555737 DEKP35659 375 aaKnown RBP24.19■■□□□ 1.46
RCCD1-204ENST00000555737 ZNF644Q9H582 1327 aaPredicted RBP24.19■■□□□ 1.46
RCCD1-204ENST00000555737 POLA1P09884 1462 aaPredicted RBP24.18■■□□□ 1.46
RCCD1-204ENST00000555737 CCDC7Q96M83 1385 aa24.15■■□□□ 1.46
RCCD1-204ENST00000555737 KIF7Q2M1P5 1343 aa24.15■■□□□ 1.46
RCCD1-204ENST00000555737 AKNAQ7Z591 1439 aa24.15■■□□□ 1.46
RCCD1-204ENST00000555737 CNTLNQ9NXG0 1405 aa24.15■■□□□ 1.46
RCCD1-204ENST00000555737 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.13■■□□□ 1.45
RCCD1-204ENST00000555737 KDM2AQ9Y2K7 1162 aa24.11■■□□□ 1.45
RCCD1-204ENST00000555737 NOP58Q9Y2X3 529 aaKnown RBP24.1■■□□□ 1.45
RCCD1-204ENST00000555737 ZBED9Q6R2W3 1325 aa24.09■■□□□ 1.45
RCCD1-204ENST00000555737 TOPBP1Q92547 1522 aa24.08■■□□□ 1.45
RCCD1-204ENST00000555737 DNAJC5BQ9UF47 199 aa24.08■■□□□ 1.45
RCCD1-204ENST00000555737 SNAPC4Q5SXM2 1469 aa24.08■■□□□ 1.44
RCCD1-204ENST00000555737 TMC1Q8TDI8 760 aa24.05■■□□□ 1.44
RCCD1-204ENST00000555737 EFCAB5A4FU69 1503 aa24.04■■□□□ 1.44
RCCD1-204ENST00000555737 KDM5BQ9UGL1 1544 aa24.03■■□□□ 1.44
RCCD1-204ENST00000555737 KDM6BO15054 1643 aa24.02■■□□□ 1.44
RCCD1-204ENST00000555737 ABCA10Q8WWZ4 1543 aa24.02■■□□□ 1.44
RCCD1-204ENST00000555737 ANP32AP39687 249 aaKnown RBP24.01■■□□□ 1.43
RCCD1-204ENST00000555737 DENND4BO75064 1496 aaPredicted RBP23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms