RNA–Protein interactions for RNA: ENST00000555688.1

LINC00641-202, long intergenic non-protein coding RNA 641, humanhuman

TSL 1 (best) BASIC

Gene LINC00641, Length 1,763 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00641-202ENST00000555688 TRIM41Q8WV44 630 aa12.91□□□□□ -0.34
LINC00641-202ENST00000555688 BAZ1BQ9UIG0 1483 aaKnown RBP12.9□□□□□ -0.34
LINC00641-202ENST00000555688 SPDYE1Q8NFV5 336 aaPredicted RBP12.87□□□□□ -0.35
LINC00641-202ENST00000555688 NCAPD3P42695 1498 aa12.87□□□□□ -0.35
LINC00641-202ENST00000555688 PLEKHG5O94827 1062 aa12.86□□□□□ -0.35
LINC00641-202ENST00000555688 PKD2Q13563 968 aa12.84□□□□□ -0.35
LINC00641-202ENST00000555688 ZBTB47Q9UFB7 747 aaPredicted RBP12.84□□□□□ -0.35
LINC00641-202ENST00000555688 HMGXB3Q12766 1538 aa12.83□□□□□ -0.36
LINC00641-202ENST00000555688 REM2Q8IYK8 340 aaPredicted RBP12.81□□□□□ -0.36
LINC00641-202ENST00000555688 LOC105371045A0A1W2PR82 267 aa12.8□□□□□ -0.36
LINC00641-202ENST00000555688 SLC24A1O60721 1099 aa12.8□□□□□ -0.36
LINC00641-202ENST00000555688 ABCC8Q09428 1581 aa12.78□□□□□ -0.36
LINC00641-202ENST00000555688 CLEC11AQ9Y240 323 aa12.76□□□□□ -0.37
LINC00641-202ENST00000555688 PRR29P0C7W0 189 aa12.72□□□□□ -0.37
LINC00641-202ENST00000555688 CC2D2AQ9P2K1 1620 aa12.71□□□□□ -0.37
LINC00641-202ENST00000555688 FAM9AQ8IZU1 332 aaPredicted RBP12.69□□□□□ -0.38
LINC00641-202ENST00000555688 ECM2O94769 699 aaPredicted RBP12.69□□□□□ -0.38
LINC00641-202ENST00000555688 WRNQ14191 1432 aaPredicted RBP eCLIP12.66□□□□□ -0.38
LINC00641-202ENST00000555688 PITPNM1O00562 1244 aa12.66□□□□□ -0.38
LINC00641-202ENST00000555688 CREBZFQ9NS37 354 aa12.66□□□□□ -0.38
LINC00641-202ENST00000555688 CFTRP13569 1480 aa12.63□□□□□ -0.39
LINC00641-202ENST00000555688 CIZ1Q9ULV3 898 aaPredicted RBP12.62□□□□□ -0.39
LINC00641-202ENST00000555688 SYNJ1O43426 1573 aa12.62□□□□□ -0.39
LINC00641-202ENST00000555688 MNX1P50219 401 aaPredicted RBP12.59□□□□□ -0.39
LINC00641-202ENST00000555688 SOGA1O94964 1423 aa12.59□□□□□ -0.39
LINC00641-202ENST00000555688 NUBP1P53384 320 aa12.58□□□□□ -0.39
LINC00641-202ENST00000555688 GSE1Q14687 1217 aa12.56□□□□□ -0.4
LINC00641-202ENST00000555688 RUSC2Q8N2Y8 1516 aa12.56□□□□□ -0.4
LINC00641-202ENST00000555688 CADPSQ9ULU8 1353 aa12.55□□□□□ -0.4
LINC00641-202ENST00000555688 TOP2BQ02880 1626 aa12.54□□□□□ -0.4
LINC00641-202ENST00000555688 RGL2O15211 777 aa12.53□□□□□ -0.4
LINC00641-202ENST00000555688 EEA1Q15075 1411 aa12.53□□□□□ -0.4
LINC00641-202ENST00000555688 BIVM-ERCC5R4GMW8 1640 aa12.52□□□□□ -0.41
LINC00641-202ENST00000555688 PRDM2Q13029 1718 aa12.51□□□□□ -0.41
LINC00641-202ENST00000555688 PLCB2Q00722 1185 aa12.5□□□□□ -0.41
LINC00641-202ENST00000555688 CUX1P39880 1505 aa12.49□□□□□ -0.41
LINC00641-202ENST00000555688 DCAF8Q5TAQ9 597 aa12.48□□□□□ -0.41
LINC00641-202ENST00000555688 NPM1P06748 294 aaKnown RBP eCLIP12.47□□□□□ -0.41
LINC00641-202ENST00000555688 FAM212AQ96EL1 285 aa12.47□□□□□ -0.41
LINC00641-202ENST00000555688 RASEFQ8IZ41 740 aa12.43□□□□□ -0.42
LINC00641-202ENST00000555688 BBXQ8WY36 941 aaPredicted RBP12.43□□□□□ -0.42
LINC00641-202ENST00000555688 NESP48681 1621 aa12.41□□□□□ -0.42
LINC00641-202ENST00000555688 CHADLQ6NUI6 762 aa12.41□□□□□ -0.42
LINC00641-202ENST00000555688 PLSCR2Q9NRY7 297 aa12.4□□□□□ -0.42
LINC00641-202ENST00000555688 TNIKQ9UKE5 1360 aa12.4□□□□□ -0.43
LINC00641-202ENST00000555688 FANCD2Q9BXW9 1451 aa12.39□□□□□ -0.43
LINC00641-202ENST00000555688 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.38□□□□□ -0.43
LINC00641-202ENST00000555688 CHRM1P11229 460 aaPredicted RBP12.38□□□□□ -0.43
LINC00641-202ENST00000555688 KIF21BO75037 1637 aa12.37□□□□□ -0.43
LINC00641-202ENST00000555688 FXR2P51116 673 aaKnown RBP eCLIP12.37□□□□□ -0.43
LINC00641-202ENST00000555688 GOLGA3Q08378 1498 aa12.37□□□□□ -0.43
LINC00641-202ENST00000555688 LAMC3Q9Y6N6 1575 aa12.37□□□□□ -0.43
LINC00641-202ENST00000555688 RNF25Q96BH1 459 aaPredicted RBP12.36□□□□□ -0.43
LINC00641-202ENST00000555688 FARP1Q9Y4F1 1045 aaPredicted RBP12.36□□□□□ -0.43
LINC00641-202ENST00000555688 CEP164Q9UPV0 1460 aa12.36□□□□□ -0.43
LINC00641-202ENST00000555688 PRKAR2AP13861 404 aaKnown RBP12.34□□□□□ -0.43
LINC00641-202ENST00000555688 CHGAP10645 457 aaKnown RBP12.33□□□□□ -0.44
LINC00641-202ENST00000555688 UBTFP17480 764 aaKnown RBP12.33□□□□□ -0.44
LINC00641-202ENST00000555688 CEP162Q5TB80 1403 aa12.33□□□□□ -0.44
LINC00641-202ENST00000555688 PCGF6Q9BYE7 350 aa12.33□□□□□ -0.44
LINC00641-202ENST00000555688 TAOK2Q9UL54 1235 aa12.33□□□□□ -0.44
LINC00641-202ENST00000555688 KIF27Q86VH2 1401 aa12.31□□□□□ -0.44
LINC00641-202ENST00000555688 FGD5Q6ZNL6 1462 aa12.31□□□□□ -0.44
LINC00641-202ENST00000555688 RAPGEF2Q9Y4G8 1499 aa12.31□□□□□ -0.44
LINC00641-202ENST00000555688 RIOK3O14730 519 aaKnown RBP12.31□□□□□ -0.44
LINC00641-202ENST00000555688 CHRDL2Q6WN34 429 aa12.31□□□□□ -0.44
LINC00641-202ENST00000555688 PRXQ9BXM0 1461 aa12.31□□□□□ -0.44
LINC00641-202ENST00000555688 DNMBPQ6XZF7 1577 aa12.3□□□□□ -0.44
LINC00641-202ENST00000555688 HS6ST3Q8IZP7 471 aa12.3□□□□□ -0.44
LINC00641-202ENST00000555688 HAP1P54257 671 aaPredicted RBP12.29□□□□□ -0.44
LINC00641-202ENST00000555688 TOPBP1Q92547 1522 aa12.29□□□□□ -0.44
LINC00641-202ENST00000555688 TRIM26Q12899 539 aaPredicted RBP12.28□□□□□ -0.44
LINC00641-202ENST00000555688 PDS5BQ9NTI5 1447 aa12.28□□□□□ -0.44
LINC00641-202ENST00000555688 URB2Q14146 1524 aaKnown RBP12.26□□□□□ -0.45
LINC00641-202ENST00000555688 ERICH3Q5RHP9 1530 aa12.26□□□□□ -0.45
LINC00641-202ENST00000555688 CUX2O14529 1486 aa12.26□□□□□ -0.45
LINC00641-202ENST00000555688 PYGBP11216 843 aa12.25□□□□□ -0.45
LINC00641-202ENST00000555688 PAXIP1Q6ZW49 1069 aaPredicted RBP12.25□□□□□ -0.45
LINC00641-202ENST00000555688 IGF1RP08069 1367 aa12.25□□□□□ -0.45
LINC00641-202ENST00000555688 PIP4P2Q8N4L2 257 aa12.25□□□□□ -0.45
LINC00641-202ENST00000555688 DNAJC5Q9H3Z4 198 aa12.25□□□□□ -0.45
LINC00641-202ENST00000555688 POLA1P09884 1462 aaPredicted RBP12.24□□□□□ -0.45
LINC00641-202ENST00000555688 VGFO15240 615 aaPredicted RBP12.24□□□□□ -0.45
LINC00641-202ENST00000555688 TSPYL2Q9H2G4 693 aaPredicted RBP12.24□□□□□ -0.45
LINC00641-202ENST00000555688 RAD54L2Q9Y4B4 1467 aa12.23□□□□□ -0.45
LINC00641-202ENST00000555688 SPRYD3Q8NCJ5 442 aa12.23□□□□□ -0.45
LINC00641-202ENST00000555688 CFAP44Q96MT7 982 aa12.23□□□□□ -0.45
LINC00641-202ENST00000555688 KIF21AQ7Z4S6 1674 aa12.22□□□□□ -0.45
LINC00641-202ENST00000555688 SGIP1Q9BQI5 828 aa12.22□□□□□ -0.45
LINC00641-202ENST00000555688 ABCA10Q8WWZ4 1543 aa12.22□□□□□ -0.45
LINC00641-202ENST00000555688 CLIP1P30622 1438 aa12.19□□□□□ -0.46
LINC00641-202ENST00000555688 PPARGC1BQ86YN6 1023 aaKnown RBP12.16□□□□□ -0.46
LINC00641-202ENST00000555688 VSIG10Q8N0Z9 540 aa12.16□□□□□ -0.46
LINC00641-202ENST00000555688 CCDC61Q9Y6R9 512 aa12.16□□□□□ -0.46
LINC00641-202ENST00000555688 CARMIL1Q5VZK9 1371 aa12.16□□□□□ -0.46
LINC00641-202ENST00000555688 STK25O00506 426 aa12.15□□□□□ -0.46
LINC00641-202ENST00000555688 WDR97A6NE52 1622 aa12.15□□□□□ -0.47
LINC00641-202ENST00000555688 PAK3O75914 559 aaPredicted RBP12.14□□□□□ -0.47
LINC00641-202ENST00000555688 ZNF467Q7Z7K2 595 aaPredicted RBP12.14□□□□□ -0.47
LINC00641-202ENST00000555688 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms