RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 CEP170Q5SW79 1584 aa18.06■□□□□ 0.48
SHMT2-220ENST00000555634 TNIKQ9UKE5 1360 aa18.04■□□□□ 0.48
SHMT2-220ENST00000555634 NUP160Q12769 1436 aa18.02■□□□□ 0.48
SHMT2-220ENST00000555634 EFCAB5A4FU69 1503 aa18■□□□□ 0.47
SHMT2-220ENST00000555634 KIAA0586Q9BVV6 1533 aa18■□□□□ 0.47
SHMT2-220ENST00000555634 LOC105371045A0A1W2PR82 267 aa17.96■□□□□ 0.47
SHMT2-220ENST00000555634 CLASP1Q7Z460 1538 aa17.95■□□□□ 0.46
SHMT2-220ENST00000555634 CEP162Q5TB80 1403 aa17.95■□□□□ 0.46
SHMT2-220ENST00000555634 SHROOM2Q13796 1616 aa17.93■□□□□ 0.46
SHMT2-220ENST00000555634 UGGT2Q9NYU1 1516 aa17.92■□□□□ 0.46
SHMT2-220ENST00000555634 SAMD9Q5K651 1589 aa17.91■□□□□ 0.46
SHMT2-220ENST00000555634 CLIP1P30622 1438 aa17.91■□□□□ 0.46
SHMT2-220ENST00000555634 KIAA0556O60303 1618 aa17.88■□□□□ 0.45
SHMT2-220ENST00000555634 CARMIL2Q6F5E8 1435 aa17.88■□□□□ 0.45
SHMT2-220ENST00000555634 OSCARQ8IYS5 282 aa17.86■□□□□ 0.45
SHMT2-220ENST00000555634 RANGAP1P46060 587 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-220ENST00000555634 ARHGAP35Q9NRY4 1499 aa17.8■□□□□ 0.44
SHMT2-220ENST00000555634 PRG4Q92954 1404 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-220ENST00000555634 DISP1Q96F81 1524 aa17.77■□□□□ 0.43
SHMT2-220ENST00000555634 FMN1Q68DA7 1419 aa17.76■□□□□ 0.43
SHMT2-220ENST00000555634 JPH4Q96JJ6 628 aa17.76■□□□□ 0.43
SHMT2-220ENST00000555634 ARAP1Q96P48 1450 aa17.74■□□□□ 0.43
SHMT2-220ENST00000555634 FHOD3Q2V2M9 1422 aa17.73■□□□□ 0.43
SHMT2-220ENST00000555634 HECW1Q76N89 1606 aa17.72■□□□□ 0.43
SHMT2-220ENST00000555634 VPS8Q8N3P4 1428 aa17.72■□□□□ 0.43
SHMT2-220ENST00000555634 PCF11O94913 1555 aaKnown RBP17.71■□□□□ 0.43
SHMT2-220ENST00000555634 RAPGEF6Q8TEU7 1601 aa17.69■□□□□ 0.42
SHMT2-220ENST00000555634 FYCO1Q9BQS8 1478 aa17.69■□□□□ 0.42
SHMT2-220ENST00000555634 P3H3Q8IVL6 736 aa17.66■□□□□ 0.42
SHMT2-220ENST00000555634 ARHGEF11O15085 1522 aa17.66■□□□□ 0.42
SHMT2-220ENST00000555634 ERCC6L2Q5T890 1561 aa17.66■□□□□ 0.42
SHMT2-220ENST00000555634 RIMBP3CA6NJZ7 1639 aa17.65■□□□□ 0.42
SHMT2-220ENST00000555634 RIMBP3BA6NNM3 1639 aa17.65■□□□□ 0.42
SHMT2-220ENST00000555634 RIMBP3Q9UFD9 1639 aa17.65■□□□□ 0.42
SHMT2-220ENST00000555634 CFAP43Q8NDM7 1665 aa17.64■□□□□ 0.42
SHMT2-220ENST00000555634 PTPRGP23470 1445 aa17.62■□□□□ 0.41
SHMT2-220ENST00000555634 CASKIN1Q8WXD9 1431 aa17.61■□□□□ 0.41
SHMT2-220ENST00000555634 CCDC18Q5T9S5 1454 aa17.61■□□□□ 0.41
SHMT2-220ENST00000555634 APLP2Q06481 763 aa17.6■□□□□ 0.41
SHMT2-220ENST00000555634 ABCA8O94911 1581 aa17.59■□□□□ 0.41
SHMT2-220ENST00000555634 TTBK1Q5TCY1 1321 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-220ENST00000555634 ABCC2Q92887 1545 aa17.57■□□□□ 0.4
SHMT2-220ENST00000555634 LRRIQ1Q96JM4 1722 aa17.57■□□□□ 0.4
SHMT2-220ENST00000555634 TIAM1Q13009 1591 aa17.54■□□□□ 0.4
SHMT2-220ENST00000555634 PLB1Q6P1J6 1458 aa17.54■□□□□ 0.4
SHMT2-220ENST00000555634 UACAQ9BZF9 1416 aa17.54■□□□□ 0.4
SHMT2-220ENST00000555634 ATP1B4Q9UN42 357 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-220ENST00000555634 MAP3K1Q13233 1512 aa17.52■□□□□ 0.4
SHMT2-220ENST00000555634 UHRF1BP1LA0JNW5 1464 aa17.51■□□□□ 0.39
SHMT2-220ENST00000555634 ADCY10Q96PN6 1610 aa17.51■□□□□ 0.39
SHMT2-220ENST00000555634 ZCCHC11Q5TAX3 1644 aaKnown RBP17.5■□□□□ 0.39
SHMT2-220ENST00000555634 NUP153P49790 1475 aaKnown RBP17.5■□□□□ 0.39
SHMT2-220ENST00000555634 EPRSP07814 1512 aaKnown RBP17.49■□□□□ 0.39
SHMT2-220ENST00000555634 EHBP1L1Q8N3D4 1523 aa17.47■□□□□ 0.39
SHMT2-220ENST00000555634 CDK13Q14004 1512 aaKnown RBP17.45■□□□□ 0.38
SHMT2-220ENST00000555634 SUPT6HQ7KZ85 1726 aaKnown RBP17.44■□□□□ 0.38
SHMT2-220ENST00000555634 CDK11AQ9UQ88 783 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-220ENST00000555634 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.42■□□□□ 0.38
SHMT2-220ENST00000555634 HNRNPUL2Q1KMD3 747 aaKnown RBP17.42■□□□□ 0.38
SHMT2-220ENST00000555634 KIF14Q15058 1648 aa17.42■□□□□ 0.38
SHMT2-220ENST00000555634 KDM5BQ9UGL1 1544 aa17.41■□□□□ 0.38
SHMT2-220ENST00000555634 MTUS2Q5JR59 1369 aa17.4■□□□□ 0.38
SHMT2-220ENST00000555634 NPM1P06748 294 aaKnown RBP eCLIP17.39■□□□□ 0.37
SHMT2-220ENST00000555634 ITSN2Q9NZM3 1697 aa17.38■□□□□ 0.37
SHMT2-220ENST00000555634 LRRC9Q6ZRR7 1453 aa17.37■□□□□ 0.37
SHMT2-220ENST00000555634 ATP10BO94823 1461 aa17.36■□□□□ 0.37
SHMT2-220ENST00000555634 ARID3CA6NKF2 412 aa17.34■□□□□ 0.37
SHMT2-220ENST00000555634 CYB5RLQ6IPT4 315 aa17.34■□□□□ 0.37
SHMT2-220ENST00000555634 MAPKBP1O60336 1514 aa17.32■□□□□ 0.36
SHMT2-220ENST00000555634 TROQ12816 1431 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-220ENST00000555634 MYO5CQ9NQX4 1742 aa17.31■□□□□ 0.36
SHMT2-220ENST00000555634 WDR7Q9Y4E6 1490 aa17.31■□□□□ 0.36
SHMT2-220ENST00000555634 PLEKHD1A6NEE1 506 aa17.3■□□□□ 0.36
SHMT2-220ENST00000555634 MAGI3Q5TCQ9 1506 aa17.29■□□□□ 0.36
SHMT2-220ENST00000555634 ASXL2Q76L83 1435 aa17.26■□□□□ 0.35
SHMT2-220ENST00000555634 NCOA2Q15596 1464 aa17.24■□□□□ 0.35
SHMT2-220ENST00000555634 CDC42BPAQ5VT25 1732 aa17.24■□□□□ 0.35
SHMT2-220ENST00000555634 PREX2Q70Z35 1606 aa17.24■□□□□ 0.35
SHMT2-220ENST00000555634 ABCA9Q8IUA7 1624 aa17.23■□□□□ 0.35
SHMT2-220ENST00000555634 TTC37Q6PGP7 1564 aa17.22■□□□□ 0.35
SHMT2-220ENST00000555634 CFAP74Q9C0B2 1584 aa17.22■□□□□ 0.35
SHMT2-220ENST00000555634 KANK4Q5T7N3 995 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-220ENST00000555634 CCNB3Q8WWL7 1395 aa17.19■□□□□ 0.34
SHMT2-220ENST00000555634 AEBP2Q6ZN18 517 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-220ENST00000555634 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.19■□□□□ 0.34
SHMT2-220ENST00000555634 PPARGC1BQ86YN6 1023 aaKnown RBP17.18■□□□□ 0.34
SHMT2-220ENST00000555634 DIP2BQ9P265 1576 aa17.18■□□□□ 0.34
SHMT2-220ENST00000555634 MYOM3Q5VTT5 1437 aa17.17■□□□□ 0.34
SHMT2-220ENST00000555634 KIF13AQ9H1H9 1805 aa17.16■□□□□ 0.34
SHMT2-220ENST00000555634 CDC42BPBQ9Y5S2 1711 aa17.16■□□□□ 0.34
SHMT2-220ENST00000555634 GLI2P10070 1586 aa17.15■□□□□ 0.34
SHMT2-220ENST00000555634 PTPN23Q9H3S7 1636 aa17.15■□□□□ 0.34
SHMT2-220ENST00000555634 ARHGAP5Q13017 1502 aa17.15■□□□□ 0.34
SHMT2-220ENST00000555634 ARAP3Q8WWN8 1544 aa17.15■□□□□ 0.34
SHMT2-220ENST00000555634 MAP3K4Q9Y6R4 1608 aa17.14■□□□□ 0.33
SHMT2-220ENST00000555634 ABCC10Q5T3U5 1492 aa17.13■□□□□ 0.33
SHMT2-220ENST00000555634 KCNH8Q96L42 1107 aa17.12■□□□□ 0.33
SHMT2-220ENST00000555634 MIA2Q96PC5 1412 aa17.12■□□□□ 0.33
SHMT2-220ENST00000555634 FGD6Q6ZV73 1430 aa17.11■□□□□ 0.33
SHMT2-220ENST00000555634 TSPOAP1O95153 1857 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms