RNA–Protein interactions for RNA: ENST00000555232.5

ARHGEF40-206, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 2

Gene ARHGEF40, Length 3,902 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-206ENST00000555232 VPS8Q8N3P4 1428 aa17.35■□□□□ 0.37
ARHGEF40-206ENST00000555232 SLC4A1APQ9BWU0 796 aaKnown RBP17.33■□□□□ 0.37
ARHGEF40-206ENST00000555232 FHOD3Q2V2M9 1422 aa17.33■□□□□ 0.37
ARHGEF40-206ENST00000555232 SYNJ1O43426 1573 aa17.33■□□□□ 0.36
ARHGEF40-206ENST00000555232 FOXD1Q16676 465 aa17.33■□□□□ 0.36
ARHGEF40-206ENST00000555232 CDK11AQ9UQ88 783 aaPredicted RBP17.33■□□□□ 0.36
ARHGEF40-206ENST00000555232 FANCD2Q9BXW9 1451 aa17.32■□□□□ 0.36
ARHGEF40-206ENST00000555232 KDM2AQ9Y2K7 1162 aa17.31■□□□□ 0.36
ARHGEF40-206ENST00000555232 NCAPD3P42695 1498 aa17.28■□□□□ 0.36
ARHGEF40-206ENST00000555232 UNC13AQ9UPW8 1703 aa17.28■□□□□ 0.36
ARHGEF40-206ENST00000555232 PLPPR3Q6T4P5 718 aa17.28■□□□□ 0.36
ARHGEF40-206ENST00000555232 IGF1RP08069 1367 aa17.27■□□□□ 0.36
ARHGEF40-206ENST00000555232 TONSLQ96HA7 1378 aa17.25■□□□□ 0.35
ARHGEF40-206ENST00000555232 FGD5Q6ZNL6 1462 aa17.24■□□□□ 0.35
ARHGEF40-206ENST00000555232 BCL11AQ9H165 835 aa17.24■□□□□ 0.35
ARHGEF40-206ENST00000555232 CCNB3Q8WWL7 1395 aa17.24■□□□□ 0.35
ARHGEF40-206ENST00000555232 NEFLP07196 543 aa17.23■□□□□ 0.35
ARHGEF40-206ENST00000555232 PDS5BQ9NTI5 1447 aa17.22■□□□□ 0.35
ARHGEF40-206ENST00000555232 CFDP1Q9UEE9 299 aaPredicted RBP17.2■□□□□ 0.34
ARHGEF40-206ENST00000555232 RGL3Q3MIN7 710 aa17.2■□□□□ 0.34
ARHGEF40-206ENST00000555232 ANP32CO43423 234 aa17.18■□□□□ 0.34
ARHGEF40-206ENST00000555232 PLEKHD1A6NEE1 506 aa17.18■□□□□ 0.34
ARHGEF40-206ENST00000555232 CHGAP10645 457 aaKnown RBP17.18■□□□□ 0.34
ARHGEF40-206ENST00000555232 CC2D2AQ9P2K1 1620 aa17.17■□□□□ 0.34
ARHGEF40-206ENST00000555232 AQRO60306 1485 aaKnown RBP eCLIP17.17■□□□□ 0.342e-7■■□□□ 14.4
ARHGEF40-206ENST00000555232 SALL2Q9Y467 1007 aaPredicted RBP17.15■□□□□ 0.34
ARHGEF40-206ENST00000555232 TSPY4P0CV99 314 aa17.15■□□□□ 0.34
ARHGEF40-206ENST00000555232 TSPY10P0CW01 314 aa17.15■□□□□ 0.34
ARHGEF40-206ENST00000555232 CUX1P39880 1505 aa17.12■□□□□ 0.33
ARHGEF40-206ENST00000555232 CFTRP13569 1480 aa17.11■□□□□ 0.33
ARHGEF40-206ENST00000555232 FAM9BQ8IZU0 186 aa17.09■□□□□ 0.33
ARHGEF40-206ENST00000555232 RAB3GAP2Q9H2M9 1393 aa17.09■□□□□ 0.33
ARHGEF40-206ENST00000555232 ARAP1Q96P48 1450 aa17.07■□□□□ 0.32
ARHGEF40-206ENST00000555232 JPH4Q96JJ6 628 aa17.04■□□□□ 0.32
ARHGEF40-206ENST00000555232 FHAD1B1AJZ9 1412 aa17.04■□□□□ 0.32
ARHGEF40-206ENST00000555232 ZNF644Q9H582 1327 aaPredicted RBP17.04■□□□□ 0.32
ARHGEF40-206ENST00000555232 NPM1P06748 294 aaKnown RBP eCLIP17.02■□□□□ 0.32
ARHGEF40-206ENST00000555232 KIF21BO75037 1637 aa17.02■□□□□ 0.32
ARHGEF40-206ENST00000555232 IRX6P78412 446 aaPredicted RBP17.02■□□□□ 0.31
ARHGEF40-206ENST00000555232 HNRNPUQ00839 825 aaKnown RBP eCLIP16.99■□□□□ 0.31
ARHGEF40-206ENST00000555232 GAPVD1Q14C86 1478 aa16.98■□□□□ 0.31
ARHGEF40-206ENST00000555232 HNRNPMP52272 730 aaKnown RBP eCLIP16.97■□□□□ 0.31
ARHGEF40-206ENST00000555232 PHLDB1Q86UU1 1377 aa16.96■□□□□ 0.31
ARHGEF40-206ENST00000555232 ANP32EQ9BTT0 268 aa16.95■□□□□ 0.3
ARHGEF40-206ENST00000555232 POLA1P09884 1462 aaPredicted RBP16.94■□□□□ 0.3
ARHGEF40-206ENST00000555232 ARHGAP35Q9NRY4 1499 aa16.94■□□□□ 0.3
ARHGEF40-206ENST00000555232 SETD5Q9C0A6 1442 aa16.93■□□□□ 0.3
ARHGEF40-206ENST00000555232 PRXQ9BXM0 1461 aa16.92■□□□□ 0.3
ARHGEF40-206ENST00000555232 DHX57Q6P158 1386 aaKnown RBP16.91■□□□□ 0.3
ARHGEF40-206ENST00000555232 FKBP8Q14318 412 aa16.91■□□□□ 0.3
ARHGEF40-206ENST00000555232 TOPBP1Q92547 1522 aa16.9■□□□□ 0.3
ARHGEF40-206ENST00000555232 TOP2BQ02880 1626 aa16.9■□□□□ 0.3
ARHGEF40-206ENST00000555232 EIF4G2P78344 907 aaKnown RBP eCLIP16.89■□□□□ 0.29
ARHGEF40-206ENST00000555232 ERICH6Q7L0X2 663 aa16.89■□□□□ 0.29
ARHGEF40-206ENST00000555232 FMN1Q68DA7 1419 aa16.88■□□□□ 0.29
ARHGEF40-206ENST00000555232 HMGXB3Q12766 1538 aa16.87■□□□□ 0.29
ARHGEF40-206ENST00000555232 PKD2Q13563 968 aa16.87■□□□□ 0.29
ARHGEF40-206ENST00000555232 MPHOSPH9Q99550 1183 aa16.86■□□□□ 0.29
ARHGEF40-206ENST00000555232 MRS2Q9HD23 443 aa16.85■□□□□ 0.29
ARHGEF40-206ENST00000555232 DCAF11Q8TEB1 546 aa16.85■□□□□ 0.29
ARHGEF40-206ENST00000555232 L3MBTL2Q969R5 705 aa16.81■□□□□ 0.28
ARHGEF40-206ENST00000555232 PLEKHG5O94827 1062 aa16.79■□□□□ 0.28
ARHGEF40-206ENST00000555232 CARD11Q9BXL7 1154 aa16.79■□□□□ 0.28
ARHGEF40-206ENST00000555232 MLECQ14165 292 aa16.79■□□□□ 0.28
ARHGEF40-206ENST00000555232 STAG3Q9UJ98 1225 aa16.79■□□□□ 0.28
ARHGEF40-206ENST00000555232 HSPA5P11021 654 aaKnown RBP16.78■□□□□ 0.28
ARHGEF40-206ENST00000555232 PEG3Q9GZU2 1588 aa16.77■□□□□ 0.28
ARHGEF40-206ENST00000555232 PPP1R15AO75807 674 aaPredicted RBP16.77■□□□□ 0.28
ARHGEF40-206ENST00000555232 GGT6Q6P531 493 aa16.77■□□□□ 0.27
ARHGEF40-206ENST00000555232 PRKCSHP14314 528 aaPredicted RBP16.76■□□□□ 0.27
ARHGEF40-206ENST00000555232 NUTM2DQ5VT03 806 aaPredicted RBP16.74■□□□□ 0.27
ARHGEF40-206ENST00000555232 TMC1Q8TDI8 760 aa16.74■□□□□ 0.27
ARHGEF40-206ENST00000555232 TSHZ2Q9NRE2 1034 aa16.74■□□□□ 0.27
ARHGEF40-206ENST00000555232 NUP155O75694 1391 aa16.73■□□□□ 0.27
ARHGEF40-206ENST00000555232 ZNF608Q9ULD9 1512 aaPredicted RBP16.73■□□□□ 0.27
ARHGEF40-206ENST00000555232 SUPT16HQ9Y5B9 1047 aaKnown RBP16.73■□□□□ 0.27
ARHGEF40-206ENST00000555232 CARMIL2Q6F5E8 1435 aa16.73■□□□□ 0.27
ARHGEF40-206ENST00000555232 URB2Q14146 1524 aaKnown RBP16.73■□□□□ 0.27
ARHGEF40-206ENST00000555232 LRRC9Q6ZRR7 1453 aa16.72■□□□□ 0.27
ARHGEF40-206ENST00000555232 SAFB2Q14151 953 aaKnown RBP eCLIP16.71■□□□□ 0.27
ARHGEF40-206ENST00000555232 CYB5RLQ6IPT4 315 aa16.71■□□□□ 0.27
ARHGEF40-206ENST00000555232 TNNT2P45379 298 aaPredicted RBP16.68■□□□□ 0.26
ARHGEF40-206ENST00000555232 PTPRGP23470 1445 aa16.68■□□□□ 0.26
ARHGEF40-206ENST00000555232 ESF1Q9H501 851 aaKnown RBP16.67■□□□□ 0.26
ARHGEF40-206ENST00000555232 CLSPNQ9HAW4 1339 aa16.67■□□□□ 0.26
ARHGEF40-206ENST00000555232 CC2D1BQ5T0F9 858 aaKnown RBP16.66■□□□□ 0.26
ARHGEF40-206ENST00000555232 FGD6Q6ZV73 1430 aa16.65■□□□□ 0.26
ARHGEF40-206ENST00000555232 ERICH3Q5RHP9 1530 aa16.64■□□□□ 0.25
ARHGEF40-206ENST00000555232 KIF3BO15066 747 aa16.64■□□□□ 0.25
ARHGEF40-206ENST00000555232 PRG4Q92954 1404 aaPredicted RBP16.63■□□□□ 0.25
ARHGEF40-206ENST00000555232 SNAPC4Q5SXM2 1469 aa16.62■□□□□ 0.25
ARHGEF40-206ENST00000555232 ARID4BQ4LE39 1312 aaPredicted RBP16.62■□□□□ 0.25
ARHGEF40-206ENST00000555232 GRIN2BQ13224 1484 aa16.61■□□□□ 0.25
ARHGEF40-206ENST00000555232 NCOA2Q15596 1464 aa16.61■□□□□ 0.25
ARHGEF40-206ENST00000555232 PRDM2Q13029 1718 aa16.61■□□□□ 0.25
ARHGEF40-206ENST00000555232 DNMBPQ6XZF7 1577 aa16.6■□□□□ 0.25
ARHGEF40-206ENST00000555232 AFAP1Q8N556 730 aa16.6■□□□□ 0.25
ARHGEF40-206ENST00000555232 CDK13Q14004 1512 aaKnown RBP16.6■□□□□ 0.25
ARHGEF40-206ENST00000555232 MRC2Q9UBG0 1479 aa16.6■□□□□ 0.25
ARHGEF40-206ENST00000555232 SLC24A1O60721 1099 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms