RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 LOC105371045A0A1W2PR82 267 aa16.6■□□□□ 0.25
SYNE2-215ENST00000554997 GOLGA3Q08378 1498 aa16.59■□□□□ 0.25
SYNE2-215ENST00000554997 KIAA0586Q9BVV6 1533 aa16.57■□□□□ 0.24
SYNE2-215ENST00000554997 JPH4Q96JJ6 628 aa16.56■□□□□ 0.24
SYNE2-215ENST00000554997 CEP170Q5SW79 1584 aa16.55■□□□□ 0.24
SYNE2-215ENST00000554997 TNIKQ9UKE5 1360 aa16.51■□□□□ 0.23
SYNE2-215ENST00000554997 CLASP1Q7Z460 1538 aa16.5■□□□□ 0.23
SYNE2-215ENST00000554997 IQGAP2Q13576 1575 aa16.45■□□□□ 0.22
SYNE2-215ENST00000554997 RIMBP3CA6NJZ7 1639 aa16.44■□□□□ 0.22
SYNE2-215ENST00000554997 RIMBP3BA6NNM3 1639 aa16.44■□□□□ 0.22
SYNE2-215ENST00000554997 RIMBP3Q9UFD9 1639 aa16.44■□□□□ 0.22
SYNE2-215ENST00000554997 RANGAP1P46060 587 aaPredicted RBP16.43■□□□□ 0.22
SYNE2-215ENST00000554997 PRG4Q92954 1404 aaPredicted RBP16.43■□□□□ 0.22
SYNE2-215ENST00000554997 UGGT2Q9NYU1 1516 aa16.41■□□□□ 0.22
SYNE2-215ENST00000554997 CTTNBP2Q8WZ74 1663 aa16.4■□□□□ 0.22
SYNE2-215ENST00000554997 SHROOM2Q13796 1616 aa16.4■□□□□ 0.22
SYNE2-215ENST00000554997 CARMIL2Q6F5E8 1435 aa16.39■□□□□ 0.21
SYNE2-215ENST00000554997 ARHGEF11O15085 1522 aa16.39■□□□□ 0.21
SYNE2-215ENST00000554997 DISP1Q96F81 1524 aa16.36■□□□□ 0.21
SYNE2-215ENST00000554997 P3H3Q8IVL6 736 aa16.36■□□□□ 0.21
SYNE2-215ENST00000554997 CLIP1P30622 1438 aa16.33■□□□□ 0.2
SYNE2-215ENST00000554997 CEP162Q5TB80 1403 aa16.32■□□□□ 0.2
SYNE2-215ENST00000554997 ERCC6L2Q5T890 1561 aa16.3■□□□□ 0.2
SYNE2-215ENST00000554997 ARHGAP35Q9NRY4 1499 aa16.3■□□□□ 0.2
SYNE2-215ENST00000554997 PTPRGP23470 1445 aa16.3■□□□□ 0.2
SYNE2-215ENST00000554997 EFCAB5A4FU69 1503 aa16.29■□□□□ 0.2
SYNE2-215ENST00000554997 SAMD9Q5K651 1589 aa16.28■□□□□ 0.2
SYNE2-215ENST00000554997 KIAA0556O60303 1618 aa16.27■□□□□ 0.2
SYNE2-215ENST00000554997 CYB5RLQ6IPT4 315 aa16.27■□□□□ 0.2
SYNE2-215ENST00000554997 TTBK1Q5TCY1 1321 aaPredicted RBP16.26■□□□□ 0.19
SYNE2-215ENST00000554997 ARAP1Q96P48 1450 aa16.25■□□□□ 0.19
SYNE2-215ENST00000554997 FHOD3Q2V2M9 1422 aa16.25■□□□□ 0.19
SYNE2-215ENST00000554997 FMN1Q68DA7 1419 aa16.2■□□□□ 0.18
SYNE2-215ENST00000554997 UACAQ9BZF9 1416 aa16.19■□□□□ 0.18
SYNE2-215ENST00000554997 PLB1Q6P1J6 1458 aa16.14■□□□□ 0.17
SYNE2-215ENST00000554997 ATP1B4Q9UN42 357 aaPredicted RBP16.13■□□□□ 0.17
SYNE2-215ENST00000554997 UHRF1BP1LA0JNW5 1464 aa16.13■□□□□ 0.17
SYNE2-215ENST00000554997 NPM1P06748 294 aaKnown RBP eCLIP16.12■□□□□ 0.17
SYNE2-215ENST00000554997 VPS8Q8N3P4 1428 aa16.11■□□□□ 0.17
SYNE2-215ENST00000554997 ABCA8O94911 1581 aa16.11■□□□□ 0.17
SYNE2-215ENST00000554997 CASKIN1Q8WXD9 1431 aa16.11■□□□□ 0.17
SYNE2-215ENST00000554997 ABCC2Q92887 1545 aa16.08■□□□□ 0.16
SYNE2-215ENST00000554997 SENP3Q9H4L4 574 aaPredicted RBP16.06■□□□□ 0.16
SYNE2-215ENST00000554997 RAPGEF6Q8TEU7 1601 aa16.05■□□□□ 0.16
SYNE2-215ENST00000554997 NUP153P49790 1475 aaKnown RBP16.05■□□□□ 0.16
SYNE2-215ENST00000554997 KDM5BQ9UGL1 1544 aa16.04■□□□□ 0.16
SYNE2-215ENST00000554997 ATP10BO94823 1461 aa16.04■□□□□ 0.16
SYNE2-215ENST00000554997 ARID3CA6NKF2 412 aa16.04■□□□□ 0.16
SYNE2-215ENST00000554997 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.04■□□□□ 0.16
SYNE2-215ENST00000554997 HNRNPUL2Q1KMD3 747 aaKnown RBP16.04■□□□□ 0.16
SYNE2-215ENST00000554997 ADCY10Q96PN6 1610 aa16.04■□□□□ 0.16
SYNE2-215ENST00000554997 FYCO1Q9BQS8 1478 aa16.03■□□□□ 0.16
SYNE2-215ENST00000554997 APLP2Q06481 763 aa16.02■□□□□ 0.16
SYNE2-215ENST00000554997 CDK11AQ9UQ88 783 aaPredicted RBP16.02■□□□□ 0.16
SYNE2-215ENST00000554997 EPRSP07814 1512 aaKnown RBP16.01■□□□□ 0.15
SYNE2-215ENST00000554997 PLEKHD1A6NEE1 506 aa16.01■□□□□ 0.15
SYNE2-215ENST00000554997 HECW1Q76N89 1606 aa15.99■□□□□ 0.15
SYNE2-215ENST00000554997 PCF11O94913 1555 aaKnown RBP15.99■□□□□ 0.15
SYNE2-215ENST00000554997 CCDC18Q5T9S5 1454 aa15.97■□□□□ 0.15
SYNE2-215ENST00000554997 MAP3K1Q13233 1512 aa15.94■□□□□ 0.14
SYNE2-215ENST00000554997 CDK13Q14004 1512 aaKnown RBP15.94■□□□□ 0.14
SYNE2-215ENST00000554997 ASXL2Q76L83 1435 aa15.94■□□□□ 0.14
SYNE2-215ENST00000554997 KCNH8Q96L42 1107 aa15.93■□□□□ 0.14
SYNE2-215ENST00000554997 ZCCHC11Q5TAX3 1644 aaKnown RBP15.93■□□□□ 0.14
SYNE2-215ENST00000554997 MAPKBP1O60336 1514 aa15.91■□□□□ 0.14
SYNE2-215ENST00000554997 KANK4Q5T7N3 995 aaPredicted RBP15.91■□□□□ 0.14
SYNE2-215ENST00000554997 WDR7Q9Y4E6 1490 aa15.88■□□□□ 0.13
SYNE2-215ENST00000554997 LRRIQ1Q96JM4 1722 aa15.88■□□□□ 0.13
SYNE2-215ENST00000554997 MTUS2Q5JR59 1369 aa15.87■□□□□ 0.13
SYNE2-215ENST00000554997 TIAM1Q13009 1591 aa15.87■□□□□ 0.13
SYNE2-215ENST00000554997 TROQ12816 1431 aaPredicted RBP15.87■□□□□ 0.13
SYNE2-215ENST00000554997 PHF23Q9BUL5 403 aaPredicted RBP15.86■□□□□ 0.13
SYNE2-215ENST00000554997 LRRC9Q6ZRR7 1453 aa15.85■□□□□ 0.13
SYNE2-215ENST00000554997 FAM69CQ0P6D2 419 aa15.85■□□□□ 0.13
SYNE2-215ENST00000554997 TRHP20396 242 aaPredicted RBP15.84■□□□□ 0.13
SYNE2-215ENST00000554997 KIF13AQ9H1H9 1805 aa15.84■□□□□ 0.13
SYNE2-215ENST00000554997 ABCC10Q5T3U5 1492 aa15.84■□□□□ 0.13
SYNE2-215ENST00000554997 MAGI3Q5TCQ9 1506 aa15.84■□□□□ 0.13
SYNE2-215ENST00000554997 PPARGC1BQ86YN6 1023 aaKnown RBP15.81■□□□□ 0.12
SYNE2-215ENST00000554997 CFAP43Q8NDM7 1665 aa15.79■□□□□ 0.12
SYNE2-215ENST00000554997 EHBP1L1Q8N3D4 1523 aa15.78■□□□□ 0.12
SYNE2-215ENST00000554997 GLI2P10070 1586 aa15.77■□□□□ 0.11
SYNE2-215ENST00000554997 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.75■□□□□ 0.11
SYNE2-215ENST00000554997 CD109Q6YHK3 1445 aa15.75■□□□□ 0.11
SYNE2-215ENST00000554997 CCNB3Q8WWL7 1395 aa15.75■□□□□ 0.11
SYNE2-215ENST00000554997 NCOA2Q15596 1464 aa15.74■□□□□ 0.11
SYNE2-215ENST00000554997 DIP2BQ9P265 1576 aa15.74■□□□□ 0.11
SYNE2-215ENST00000554997 KIF14Q15058 1648 aa15.73■□□□□ 0.11
SYNE2-215ENST00000554997 PLCH2O75038 1416 aa15.73■□□□□ 0.11
SYNE2-215ENST00000554997 CFDP1Q9UEE9 299 aaPredicted RBP15.72■□□□□ 0.11
SYNE2-215ENST00000554997 ABCA9Q8IUA7 1624 aa15.72■□□□□ 0.11
SYNE2-215ENST00000554997 EFCAB2Q5VUJ9 269 aa15.71■□□□□ 0.11
SYNE2-215ENST00000554997 GPATCH8Q9UKJ3 1502 aaKnown RBP15.71■□□□□ 0.11
SYNE2-215ENST00000554997 SUPT6HQ7KZ85 1726 aaKnown RBP15.7■□□□□ 0.1
SYNE2-215ENST00000554997 PHLDB1Q86UU1 1377 aa15.69■□□□□ 0.1
SYNE2-215ENST00000554997 TTC37Q6PGP7 1564 aa15.67■□□□□ 0.1
SYNE2-215ENST00000554997 TSPOAP1O95153 1857 aa15.67■□□□□ 0.1
SYNE2-215ENST00000554997 MYOM3Q5VTT5 1437 aa15.67■□□□□ 0.1
SYNE2-215ENST00000554997 MAP3K4Q9Y6R4 1608 aa15.66■□□□□ 0.1
SYNE2-215ENST00000554997 MIA2Q96PC5 1412 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms