RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 CTTNBP2Q8WZ74 1663 aa28.12■■■□□ 2.09
SHOX-204ENST00000554971 SHROOM2Q13796 1616 aa28.11■■■□□ 2.09
SHOX-204ENST00000554971 IQGAP2Q13576 1575 aa28.07■■■□□ 2.08
SHOX-204ENST00000554971 EHMT2Q96KQ7 1210 aa28.06■■■□□ 2.08
SHOX-204ENST00000554971 GOLGA3Q08378 1498 aa28.05■■■□□ 2.08
SHOX-204ENST00000554971 ARHGEF11O15085 1522 aa28.03■■■□□ 2.08
SHOX-204ENST00000554971 ERCC6L2Q5T890 1561 aa28.02■■■□□ 2.08
SHOX-204ENST00000554971 JPH4Q96JJ6 628 aa28.01■■■□□ 2.07
SHOX-204ENST00000554971 RIMBP3CA6NJZ7 1639 aa28.01■■■□□ 2.07
SHOX-204ENST00000554971 RIMBP3BA6NNM3 1639 aa28.01■■■□□ 2.07
SHOX-204ENST00000554971 RIMBP3Q9UFD9 1639 aa28.01■■■□□ 2.07
SHOX-204ENST00000554971 PRG4Q92954 1404 aaPredicted RBP27.94■■■□□ 2.06
SHOX-204ENST00000554971 UGGT2Q9NYU1 1516 aa27.93■■■□□ 2.06
SHOX-204ENST00000554971 UBTFP17480 764 aaKnown RBP27.9■■■□□ 2.06
SHOX-204ENST00000554971 DISP1Q96F81 1524 aa27.88■■■□□ 2.05
SHOX-204ENST00000554971 ARAP1Q96P48 1450 aa27.85■■■□□ 2.05
SHOX-204ENST00000554971 LOC105371045A0A1W2PR82 267 aa27.83■■■□□ 2.05
SHOX-204ENST00000554971 KIAA0556O60303 1618 aa27.82■■■□□ 2.04
SHOX-204ENST00000554971 SAMD9Q5K651 1589 aa27.79■■■□□ 2.04
SHOX-204ENST00000554971 TNIKQ9UKE5 1360 aa27.77■■■□□ 2.04
SHOX-204ENST00000554971 CARMIL2Q6F5E8 1435 aa27.76■■■□□ 2.04
SHOX-204ENST00000554971 RANGAP1P46060 587 aaPredicted RBP27.75■■■□□ 2.03
SHOX-204ENST00000554971 CYB5RLQ6IPT4 315 aa27.7■■■□□ 2.02
SHOX-204ENST00000554971 EFCAB5A4FU69 1503 aa27.67■■■□□ 2.02
SHOX-204ENST00000554971 P3H3Q8IVL6 736 aa27.66■■■□□ 2.02
SHOX-204ENST00000554971 ARHGAP35Q9NRY4 1499 aa27.66■■■□□ 2.02
SHOX-204ENST00000554971 PTPRGP23470 1445 aa27.63■■■□□ 2.01
SHOX-204ENST00000554971 TTBK1Q5TCY1 1321 aaPredicted RBP27.62■■■□□ 2.01
SHOX-204ENST00000554971 FHOD3Q2V2M9 1422 aa27.62■■■□□ 2.01
SHOX-204ENST00000554971 CLIP1P30622 1438 aa27.57■■■□□ 2
SHOX-204ENST00000554971 CEP162Q5TB80 1403 aa27.57■■■□□ 2
SHOX-204ENST00000554971 ADCY10Q96PN6 1610 aa27.54■■■□□ 2
SHOX-204ENST00000554971 PLB1Q6P1J6 1458 aa27.52■■■□□ 2
SHOX-204ENST00000554971 ABCA8O94911 1581 aa27.48■■□□□ 1.99
SHOX-204ENST00000554971 UACAQ9BZF9 1416 aa27.47■■□□□ 1.99
SHOX-204ENST00000554971 ABCC2Q92887 1545 aa27.45■■□□□ 1.98
SHOX-204ENST00000554971 UHRF1BP1LA0JNW5 1464 aa27.44■■□□□ 1.98
SHOX-204ENST00000554971 RAPGEF6Q8TEU7 1601 aa27.41■■□□□ 1.98
SHOX-204ENST00000554971 FMN1Q68DA7 1419 aa27.38■■□□□ 1.97
SHOX-204ENST00000554971 HRCP23327 699 aa27.38■■□□□ 1.97
SHOX-204ENST00000554971 NUP153P49790 1475 aaKnown RBP27.34■■□□□ 1.97
SHOX-204ENST00000554971 PCGF6Q9BYE7 350 aa27.33■■□□□ 1.97
SHOX-204ENST00000554971 KDM5BQ9UGL1 1544 aa27.33■■□□□ 1.97
SHOX-204ENST00000554971 PCF11O94913 1555 aaKnown RBP27.31■■□□□ 1.96
SHOX-204ENST00000554971 ZCCHC11Q5TAX3 1644 aaKnown RBP27.31■■□□□ 1.96
SHOX-204ENST00000554971 LRRIQ1Q96JM4 1722 aa27.29■■□□□ 1.96
SHOX-204ENST00000554971 ARID3CA6NKF2 412 aa27.26■■□□□ 1.95
SHOX-204ENST00000554971 ATP10BO94823 1461 aa27.25■■□□□ 1.95
SHOX-204ENST00000554971 CASKIN1Q8WXD9 1431 aa27.25■■□□□ 1.95
SHOX-204ENST00000554971 HECW1Q76N89 1606 aa27.24■■□□□ 1.95
SHOX-204ENST00000554971 MAPKBP1O60336 1514 aa27.23■■□□□ 1.95
SHOX-204ENST00000554971 FYCO1Q9BQS8 1478 aa27.21■■□□□ 1.95
SHOX-204ENST00000554971 NPM1P06748 294 aaKnown RBP eCLIP27.2■■□□□ 1.95
SHOX-204ENST00000554971 TRIM26Q12899 539 aaPredicted RBP27.2■■□□□ 1.95
SHOX-204ENST00000554971 CDK13Q14004 1512 aaKnown RBP27.2■■□□□ 1.94
SHOX-204ENST00000554971 VPS8Q8N3P4 1428 aa27.19■■□□□ 1.94
SHOX-204ENST00000554971 EPRSP07814 1512 aaKnown RBP27.18■■□□□ 1.94
SHOX-204ENST00000554971 ASXL2Q76L83 1435 aa27.16■■□□□ 1.94
SHOX-204ENST00000554971 ATP1B4Q9UN42 357 aaPredicted RBP27.16■■□□□ 1.94
SHOX-204ENST00000554971 KIF13AQ9H1H9 1805 aa27.09■■□□□ 1.93
SHOX-204ENST00000554971 WDR7Q9Y4E6 1490 aa27.08■■□□□ 1.93
SHOX-204ENST00000554971 CCDC18Q5T9S5 1454 aa27.06■■□□□ 1.92
SHOX-204ENST00000554971 DIP2BQ9P265 1576 aa27.06■■□□□ 1.92
SHOX-204ENST00000554971 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.06■■□□□ 1.92
SHOX-204ENST00000554971 HNRNPUL2Q1KMD3 747 aaKnown RBP27.06■■□□□ 1.92
SHOX-204ENST00000554971 ABCC10Q5T3U5 1492 aa27.05■■□□□ 1.92
SHOX-204ENST00000554971 MAGI3Q5TCQ9 1506 aa27.02■■□□□ 1.92
SHOX-204ENST00000554971 CFAP43Q8NDM7 1665 aa26.99■■□□□ 1.91
SHOX-204ENST00000554971 TIAM1Q13009 1591 aa26.95■■□□□ 1.91
SHOX-204ENST00000554971 PLEKHD1A6NEE1 506 aa26.95■■□□□ 1.9
SHOX-204ENST00000554971 TRHP20396 242 aaPredicted RBP26.94■■□□□ 1.9
SHOX-204ENST00000554971 KCNH8Q96L42 1107 aa26.94■■□□□ 1.9
SHOX-204ENST00000554971 GLI2P10070 1586 aa26.94■■□□□ 1.9
SHOX-204ENST00000554971 FAM69CQ0P6D2 419 aa26.93■■□□□ 1.9
SHOX-204ENST00000554971 TROQ12816 1431 aaPredicted RBP26.92■■□□□ 1.9
SHOX-204ENST00000554971 KIF14Q15058 1648 aa26.91■■□□□ 1.9
SHOX-204ENST00000554971 CDK11AQ9UQ88 783 aaPredicted RBP26.9■■□□□ 1.9
SHOX-204ENST00000554971 MAP3K1Q13233 1512 aa26.89■■□□□ 1.9
SHOX-204ENST00000554971 MAP3K4Q9Y6R4 1608 aa26.89■■□□□ 1.89
SHOX-204ENST00000554971 ABCA9Q8IUA7 1624 aa26.88■■□□□ 1.89
SHOX-204ENST00000554971 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.86■■□□□ 1.89
SHOX-204ENST00000554971 TSPOAP1O95153 1857 aa26.86■■□□□ 1.89
SHOX-204ENST00000554971 TTC37Q6PGP7 1564 aa26.86■■□□□ 1.89
SHOX-204ENST00000554971 PPRC1Q5VV67 1664 aaKnown RBP26.84■■□□□ 1.89
SHOX-204ENST00000554971 KANK4Q5T7N3 995 aaPredicted RBP26.82■■□□□ 1.88
SHOX-204ENST00000554971 LRRC9Q6ZRR7 1453 aa26.82■■□□□ 1.88
SHOX-204ENST00000554971 EHBP1L1Q8N3D4 1523 aa26.82■■□□□ 1.88
SHOX-204ENST00000554971 MTUS2Q5JR59 1369 aa26.81■■□□□ 1.88
SHOX-204ENST00000554971 CD109Q6YHK3 1445 aa26.77■■□□□ 1.88
SHOX-204ENST00000554971 APLP2Q06481 763 aa26.73■■□□□ 1.87
SHOX-204ENST00000554971 SUPT6HQ7KZ85 1726 aaKnown RBP26.72■■□□□ 1.87
SHOX-204ENST00000554971 MYO5CQ9NQX4 1742 aa26.72■■□□□ 1.87
SHOX-204ENST00000554971 CDC42BPAQ5VT25 1732 aa26.71■■□□□ 1.87
SHOX-204ENST00000554971 ZEB1P37275 1124 aaPredicted RBP26.7■■□□□ 1.86
SHOX-204ENST00000554971 NCOA2Q15596 1464 aa26.69■■□□□ 1.86
SHOX-204ENST00000554971 CDC42BPBQ9Y5S2 1711 aa26.69■■□□□ 1.86
SHOX-204ENST00000554971 PREX2Q70Z35 1606 aa26.66■■□□□ 1.86
SHOX-204ENST00000554971 PLCH2O75038 1416 aa26.65■■□□□ 1.86
SHOX-204ENST00000554971 GPATCH8Q9UKJ3 1502 aaKnown RBP26.64■■□□□ 1.86
SHOX-204ENST00000554971 ARAP3Q8WWN8 1544 aa26.62■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms