RNA–Protein interactions for RNA: ENST00000553882.1

ACTN1-211, Transcript of actinin alpha 1, humanhuman

TSL 2

Gene ACTN1, Length 2,636 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-211ENST00000553882 LRRC9Q6ZRR7 1453 aa21.27■■□□□ 1
ACTN1-211ENST00000553882 RAB3GAP2Q9H2M9 1393 aa21.27■■□□□ 1
ACTN1-211ENST00000553882 POLA1P09884 1462 aaPredicted RBP21.27■■□□□ 1
ACTN1-211ENST00000553882 PHLDB1Q86UU1 1377 aa21.26■□□□□ 0.99
ACTN1-211ENST00000553882 DNMBPQ6XZF7 1577 aa21.26■□□□□ 0.99
ACTN1-211ENST00000553882 TOPBP1Q92547 1522 aa21.26■□□□□ 0.99
ACTN1-211ENST00000553882 FAM50AQ14320 339 aaKnown RBP21.25■□□□□ 0.99
ACTN1-211ENST00000553882 FHOD3Q2V2M9 1422 aa21.25■□□□□ 0.99
ACTN1-211ENST00000553882 FHAD1B1AJZ9 1412 aa21.24■□□□□ 0.99
ACTN1-211ENST00000553882 MAP3K1Q13233 1512 aa21.23■□□□□ 0.99
ACTN1-211ENST00000553882 PCF11O94913 1555 aaKnown RBP21.23■□□□□ 0.99
ACTN1-211ENST00000553882 ABCA10Q8WWZ4 1543 aa21.23■□□□□ 0.99
ACTN1-211ENST00000553882 SETD5Q9C0A6 1442 aa21.15■□□□□ 0.98
ACTN1-211ENST00000553882 MAPKBP1O60336 1514 aa21.14■□□□□ 0.97
ACTN1-211ENST00000553882 CFAP43Q8NDM7 1665 aa21.13■□□□□ 0.97
ACTN1-211ENST00000553882 TDRD9Q8NDG6 1382 aaKnown RBP21.11■□□□□ 0.97
ACTN1-211ENST00000553882 URB2Q14146 1524 aaKnown RBP21.1■□□□□ 0.97
ACTN1-211ENST00000553882 DNAJC5BQ9UF47 199 aa21.09■□□□□ 0.97
ACTN1-211ENST00000553882 CUL7Q14999 1698 aa21.09■□□□□ 0.97
ACTN1-211ENST00000553882 FYCO1Q9BQS8 1478 aa21.09■□□□□ 0.97
ACTN1-211ENST00000553882 EFCAB5A4FU69 1503 aa21.08■□□□□ 0.96
ACTN1-211ENST00000553882 SIN3AQ96ST3 1273 aa21.08■□□□□ 0.96
ACTN1-211ENST00000553882 CASKIN1Q8WXD9 1431 aa21.07■□□□□ 0.96
ACTN1-211ENST00000553882 CTTNBP2Q8WZ74 1663 aa21.06■□□□□ 0.96
ACTN1-211ENST00000553882 LAMC3Q9Y6N6 1575 aa21.03■□□□□ 0.96
ACTN1-211ENST00000553882 FMN1Q68DA7 1419 aa21.01■□□□□ 0.95
ACTN1-211ENST00000553882 AQRO60306 1485 aaKnown RBP eCLIP20.99■□□□□ 0.95
ACTN1-211ENST00000553882 WDR97A6NE52 1622 aa20.99■□□□□ 0.95
ACTN1-211ENST00000553882 GAPVD1Q14C86 1478 aa20.98■□□□□ 0.95
ACTN1-211ENST00000553882 MTUS2Q5JR59 1369 aa20.97■□□□□ 0.95
ACTN1-211ENST00000553882 SNAPC4Q5SXM2 1469 aa20.97■□□□□ 0.95
ACTN1-211ENST00000553882 ABCA5Q8WWZ7 1642 aa20.95■□□□□ 0.94
ACTN1-211ENST00000553882 PDS5BQ9NTI5 1447 aa20.95■□□□□ 0.94
ACTN1-211ENST00000553882 FGD6Q6ZV73 1430 aa20.94■□□□□ 0.94
ACTN1-211ENST00000553882 KCNH8Q96L42 1107 aa20.9■□□□□ 0.94
ACTN1-211ENST00000553882 HIRIP3Q9BW71 556 aaPredicted RBP20.89■□□□□ 0.93
ACTN1-211ENST00000553882 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.89■□□□□ 0.93
ACTN1-211ENST00000553882 KIF21AQ7Z4S6 1674 aa20.89■□□□□ 0.93
ACTN1-211ENST00000553882 SAMD9Q5K651 1589 aa20.88■□□□□ 0.93
ACTN1-211ENST00000553882 DDX10Q13206 875 aaKnown RBP20.87■□□□□ 0.93
ACTN1-211ENST00000553882 LRRIQ1Q96JM4 1722 aa20.87■□□□□ 0.93
ACTN1-211ENST00000553882 PTPRKQ15262 1439 aa20.86■□□□□ 0.93
ACTN1-211ENST00000553882 NCOA2Q15596 1464 aa20.84■□□□□ 0.93
ACTN1-211ENST00000553882 GRIN2BQ13224 1484 aa20.83■□□□□ 0.93
ACTN1-211ENST00000553882 CCDC18Q5T9S5 1454 aa20.83■□□□□ 0.92
ACTN1-211ENST00000553882 PPP1R15AO75807 674 aaPredicted RBP20.81■□□□□ 0.92
ACTN1-211ENST00000553882 MYOM3Q5VTT5 1437 aa20.8■□□□□ 0.92
ACTN1-211ENST00000553882 TIMELESSQ9UNS1 1208 aa20.79■□□□□ 0.92
ACTN1-211ENST00000553882 TARBP1Q13395 1621 aaKnown RBP20.79■□□□□ 0.92
ACTN1-211ENST00000553882 ARID3CA6NKF2 412 aa20.78■□□□□ 0.92
ACTN1-211ENST00000553882 HFM1A2PYH4 1435 aa20.78■□□□□ 0.92
ACTN1-211ENST00000553882 TONSLQ96HA7 1378 aa20.76■□□□□ 0.91
ACTN1-211ENST00000553882 PTPN23Q9H3S7 1636 aa20.75■□□□□ 0.91
ACTN1-211ENST00000553882 SUPT6HQ7KZ85 1726 aaKnown RBP20.75■□□□□ 0.91
ACTN1-211ENST00000553882 CHIC2Q9UKJ5 165 aa20.74■□□□□ 0.91
ACTN1-211ENST00000553882 MAGI3Q5TCQ9 1506 aa20.74■□□□□ 0.91
ACTN1-211ENST00000553882 NAIPQ13075 1403 aa20.74■□□□□ 0.91
ACTN1-211ENST00000553882 SUPT16HQ9Y5B9 1047 aaKnown RBP20.74■□□□□ 0.91
ACTN1-211ENST00000553882 EHBP1L1Q8N3D4 1523 aa20.74■□□□□ 0.91
ACTN1-211ENST00000553882 UACAQ9BZF9 1416 aa20.74■□□□□ 0.91
ACTN1-211ENST00000553882 RRP7BPQ9NSQ0 103 aa20.73■□□□□ 0.91
ACTN1-211ENST00000553882 THOC2Q8NI27 1593 aaKnown RBP20.72■□□□□ 0.91
ACTN1-211ENST00000553882 PBRM1Q86U86 1689 aa20.69■□□□□ 0.9
ACTN1-211ENST00000553882 UGGT2Q9NYU1 1516 aa20.69■□□□□ 0.9
ACTN1-211ENST00000553882 IQGAP2Q13576 1575 aa20.67■□□□□ 0.9
ACTN1-211ENST00000553882 CDK13Q14004 1512 aaKnown RBP20.65■□□□□ 0.9
ACTN1-211ENST00000553882 ARHGEF11O15085 1522 aa20.64■□□□□ 0.89
ACTN1-211ENST00000553882 EPRSP07814 1512 aaKnown RBP20.64■□□□□ 0.89
ACTN1-211ENST00000553882 ADAMTS12P58397 1594 aa20.64■□□□□ 0.89
ACTN1-211ENST00000553882 HECW1Q76N89 1606 aa20.63■□□□□ 0.89
ACTN1-211ENST00000553882 TRIM52Q96A61 297 aa20.62■□□□□ 0.89
ACTN1-211ENST00000553882 MRC2Q9UBG0 1479 aa20.61■□□□□ 0.89
ACTN1-211ENST00000553882 ZNF608Q9ULD9 1512 aaPredicted RBP20.6■□□□□ 0.89
ACTN1-211ENST00000553882 ANP32CO43423 234 aa20.59■□□□□ 0.89
ACTN1-211ENST00000553882 TCOF1Q13428 1488 aaKnown RBP20.56■□□□□ 0.88
ACTN1-211ENST00000553882 WDR62O43379 1518 aa20.55■□□□□ 0.88
ACTN1-211ENST00000553882 KDM6BO15054 1643 aa20.55■□□□□ 0.88
ACTN1-211ENST00000553882 FOXD1Q16676 465 aa20.53■□□□□ 0.88
ACTN1-211ENST00000553882 KDM5BQ9UGL1 1544 aa20.52■□□□□ 0.88
ACTN1-211ENST00000553882 DENND4BO75064 1496 aaPredicted RBP20.52■□□□□ 0.88
ACTN1-211ENST00000553882 BCANQ96GW7 911 aa20.5■□□□□ 0.87
ACTN1-211ENST00000553882 GCC2Q8IWJ2 1684 aa20.5■□□□□ 0.87
ACTN1-211ENST00000553882 CCER2I3L3R5 266 aa20.5■□□□□ 0.87
ACTN1-211ENST00000553882 MIA2Q96PC5 1412 aa20.5■□□□□ 0.87
ACTN1-211ENST00000553882 MPHOSPH9Q99550 1183 aa20.49■□□□□ 0.87
ACTN1-211ENST00000553882 ZNF644Q9H582 1327 aaPredicted RBP20.48■□□□□ 0.87
ACTN1-211ENST00000553882 IFT140Q96RY7 1462 aa20.48■□□□□ 0.87
ACTN1-211ENST00000553882 DISP1Q96F81 1524 aa20.46■□□□□ 0.87
ACTN1-211ENST00000553882 FKBP8Q14318 412 aa20.45■□□□□ 0.86
ACTN1-211ENST00000553882 AKNAQ7Z591 1439 aa20.45■□□□□ 0.86
ACTN1-211ENST00000553882 KIAA0586Q9BVV6 1533 aa20.45■□□□□ 0.86
ACTN1-211ENST00000553882 HSPA5P11021 654 aaKnown RBP20.44■□□□□ 0.86
ACTN1-211ENST00000553882 KIAA0556O60303 1618 aa20.44■□□□□ 0.86
ACTN1-211ENST00000553882 NUP153P49790 1475 aaKnown RBP20.43■□□□□ 0.86
ACTN1-211ENST00000553882 L3MBTL2Q969R5 705 aa20.42■□□□□ 0.86
ACTN1-211ENST00000553882 DAPK1P53355 1430 aa20.41■□□□□ 0.86
ACTN1-211ENST00000553882 WASHC2AQ641Q2 1341 aa20.41■□□□□ 0.86
ACTN1-211ENST00000553882 GRIN2AQ12879 1464 aa20.4■□□□□ 0.86
ACTN1-211ENST00000553882 FBLN2P98095 1184 aa20.4■□□□□ 0.86
ACTN1-211ENST00000553882 EIF4G3O43432 1585 aaKnown RBP20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms