RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ARAP1Q96P48 1450 aa12.34□□□□□ -0.43
LIMA1-216ENST00000552909 ERCC6L2Q5T890 1561 aa12.33□□□□□ -0.44
LIMA1-216ENST00000552909 JPH4Q96JJ6 628 aa12.32□□□□□ -0.44
LIMA1-216ENST00000552909 FAM9AQ8IZU1 332 aaPredicted RBP12.3□□□□□ -0.44
LIMA1-216ENST00000552909 SHROOM2Q13796 1616 aa12.29□□□□□ -0.44
LIMA1-216ENST00000552909 RAPGEF2Q9Y4G8 1499 aa12.29□□□□□ -0.44
LIMA1-216ENST00000552909 KIAA0586Q9BVV6 1533 aa12.29□□□□□ -0.44
LIMA1-216ENST00000552909 PRG4Q92954 1404 aaPredicted RBP12.28□□□□□ -0.44
LIMA1-216ENST00000552909 CSRNP3Q8WYN3 585 aa12.28□□□□□ -0.44
LIMA1-216ENST00000552909 PRXQ9BXM0 1461 aa12.26□□□□□ -0.45
LIMA1-216ENST00000552909 PPARGC1BQ86YN6 1023 aaKnown RBP12.26□□□□□ -0.45
LIMA1-216ENST00000552909 PCGF6Q9BYE7 350 aa12.23□□□□□ -0.45
LIMA1-216ENST00000552909 IQGAP2Q13576 1575 aa12.21□□□□□ -0.45
LIMA1-216ENST00000552909 EEA1Q15075 1411 aa12.21□□□□□ -0.46
LIMA1-216ENST00000552909 TTBK1Q5TCY1 1321 aaPredicted RBP12.18□□□□□ -0.46
LIMA1-216ENST00000552909 EHMT2Q96KQ7 1210 aa12.18□□□□□ -0.46
LIMA1-216ENST00000552909 DISP1Q96F81 1524 aa12.16□□□□□ -0.46
LIMA1-216ENST00000552909 CTTNBP2Q8WZ74 1663 aa12.16□□□□□ -0.46
LIMA1-216ENST00000552909 UGGT2Q9NYU1 1516 aa12.14□□□□□ -0.47
LIMA1-216ENST00000552909 CARMIL2Q6F5E8 1435 aa12.14□□□□□ -0.47
LIMA1-216ENST00000552909 PTPRGP23470 1445 aa12.13□□□□□ -0.47
LIMA1-216ENST00000552909 TNIKQ9UKE5 1360 aa12.12□□□□□ -0.47
LIMA1-216ENST00000552909 TRHP20396 242 aaPredicted RBP12.11□□□□□ -0.47
LIMA1-216ENST00000552909 RANGAP1P46060 587 aaPredicted RBP12.11□□□□□ -0.47
LIMA1-216ENST00000552909 KIF21BO75037 1637 aa12.1□□□□□ -0.47
LIMA1-216ENST00000552909 MYT1Q01538 1121 aa12.1□□□□□ -0.47
LIMA1-216ENST00000552909 KIAA0556O60303 1618 aa12.1□□□□□ -0.47
LIMA1-216ENST00000552909 P3H3Q8IVL6 736 aa12.09□□□□□ -0.47
LIMA1-216ENST00000552909 ADCY10Q96PN6 1610 aa12.09□□□□□ -0.47
LIMA1-216ENST00000552909 UBTFP17480 764 aaKnown RBP12.07□□□□□ -0.48
LIMA1-216ENST00000552909 GOLGA3Q08378 1498 aa12.04□□□□□ -0.48
LIMA1-216ENST00000552909 UACAQ9BZF9 1416 aa12.04□□□□□ -0.48
LIMA1-216ENST00000552909 NPM1P06748 294 aaKnown RBP eCLIP12.03□□□□□ -0.48
LIMA1-216ENST00000552909 PLB1Q6P1J6 1458 aa12.02□□□□□ -0.48
LIMA1-216ENST00000552909 SAMD9Q5K651 1589 aa12.01□□□□□ -0.49
LIMA1-216ENST00000552909 ABCC2Q92887 1545 aa12□□□□□ -0.49
LIMA1-216ENST00000552909 UHRF1BP1LA0JNW5 1464 aa12□□□□□ -0.49
LIMA1-216ENST00000552909 LOC105371045A0A1W2PR82 267 aa11.99□□□□□ -0.49
LIMA1-216ENST00000552909 SCAF1Q9H7N4 1312 aaKnown RBP11.99□□□□□ -0.49
LIMA1-216ENST00000552909 FHOD3Q2V2M9 1422 aa11.98□□□□□ -0.49
LIMA1-216ENST00000552909 MAPKBP1O60336 1514 aa11.97□□□□□ -0.49
LIMA1-216ENST00000552909 ARID3CA6NKF2 412 aa11.97□□□□□ -0.49
LIMA1-216ENST00000552909 ABCA8O94911 1581 aa11.97□□□□□ -0.49
LIMA1-216ENST00000552909 KDM5BQ9UGL1 1544 aa11.96□□□□□ -0.49
LIMA1-216ENST00000552909 FAM69CQ0P6D2 419 aa11.96□□□□□ -0.5
LIMA1-216ENST00000552909 KIF13AQ9H1H9 1805 aa11.96□□□□□ -0.5
LIMA1-216ENST00000552909 ASXL2Q76L83 1435 aa11.95□□□□□ -0.5
LIMA1-216ENST00000552909 ABCC10Q5T3U5 1492 aa11.94□□□□□ -0.5
LIMA1-216ENST00000552909 ZCCHC11Q5TAX3 1644 aaKnown RBP11.94□□□□□ -0.5
LIMA1-216ENST00000552909 ARHGAP35Q9NRY4 1499 aa11.93□□□□□ -0.5
LIMA1-216ENST00000552909 EFCAB5A4FU69 1503 aa11.93□□□□□ -0.5
LIMA1-216ENST00000552909 DIP2BQ9P265 1576 aa11.92□□□□□ -0.5
LIMA1-216ENST00000552909 ATP10BO94823 1461 aa11.9□□□□□ -0.5
LIMA1-216ENST00000552909 RAPGEF6Q8TEU7 1601 aa11.9□□□□□ -0.5
LIMA1-216ENST00000552909 NUP153P49790 1475 aaKnown RBP11.89□□□□□ -0.51
LIMA1-216ENST00000552909 KCNH8Q96L42 1107 aa11.88□□□□□ -0.51
LIMA1-216ENST00000552909 EPRSP07814 1512 aaKnown RBP11.87□□□□□ -0.51
LIMA1-216ENST00000552909 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.86□□□□□ -0.51
LIMA1-216ENST00000552909 HNRNPUL2Q1KMD3 747 aaKnown RBP11.86□□□□□ -0.51
LIMA1-216ENST00000552909 TSPOAP1O95153 1857 aa11.86□□□□□ -0.51
LIMA1-216ENST00000552909 WDR7Q9Y4E6 1490 aa11.86□□□□□ -0.51
LIMA1-216ENST00000552909 ZEB1P37275 1124 aaPredicted RBP11.86□□□□□ -0.51
LIMA1-216ENST00000552909 ATP1B4Q9UN42 357 aaPredicted RBP11.86□□□□□ -0.51
LIMA1-216ENST00000552909 TRIM26Q12899 539 aaPredicted RBP11.85□□□□□ -0.51
LIMA1-216ENST00000552909 CLIP1P30622 1438 aa11.85□□□□□ -0.51
LIMA1-216ENST00000552909 FMN1Q68DA7 1419 aa11.84□□□□□ -0.51
LIMA1-216ENST00000552909 GLI2P10070 1586 aa11.83□□□□□ -0.52
LIMA1-216ENST00000552909 CDK13Q14004 1512 aaKnown RBP11.82□□□□□ -0.52
LIMA1-216ENST00000552909 CEP162Q5TB80 1403 aa11.8□□□□□ -0.52
LIMA1-216ENST00000552909 PPRC1Q5VV67 1664 aaKnown RBP11.8□□□□□ -0.52
LIMA1-216ENST00000552909 MAP3K4Q9Y6R4 1608 aa11.79□□□□□ -0.52
LIMA1-216ENST00000552909 PLEKHD1A6NEE1 506 aa11.79□□□□□ -0.52
LIMA1-216ENST00000552909 LRRIQ1Q96JM4 1722 aa11.78□□□□□ -0.52
LIMA1-216ENST00000552909 CD109Q6YHK3 1445 aa11.78□□□□□ -0.52
LIMA1-216ENST00000552909 HECW1Q76N89 1606 aa11.77□□□□□ -0.53
LIMA1-216ENST00000552909 PCF11O94913 1555 aaKnown RBP11.77□□□□□ -0.53
LIMA1-216ENST00000552909 CASKIN1Q8WXD9 1431 aa11.76□□□□□ -0.53
LIMA1-216ENST00000552909 COL17A1Q9UMD9 1497 aaPredicted RBP11.74□□□□□ -0.53
LIMA1-216ENST00000552909 CFAP43Q8NDM7 1665 aa11.74□□□□□ -0.53
LIMA1-216ENST00000552909 ABCA9Q8IUA7 1624 aa11.73□□□□□ -0.53
LIMA1-216ENST00000552909 KDM6BO15054 1643 aa11.72□□□□□ -0.53
LIMA1-216ENST00000552909 MAGI3Q5TCQ9 1506 aa11.72□□□□□ -0.53
LIMA1-216ENST00000552909 FYCO1Q9BQS8 1478 aa11.72□□□□□ -0.53
LIMA1-216ENST00000552909 CDK11AQ9UQ88 783 aaPredicted RBP11.71□□□□□ -0.53
LIMA1-216ENST00000552909 TEX14Q8IWB6 1497 aa11.71□□□□□ -0.53
LIMA1-216ENST00000552909 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.71□□□□□ -0.54
LIMA1-216ENST00000552909 TTC37Q6PGP7 1564 aa11.69□□□□□ -0.54
LIMA1-216ENST00000552909 TROQ12816 1431 aaPredicted RBP11.69□□□□□ -0.54
LIMA1-216ENST00000552909 CCDC18Q5T9S5 1454 aa11.69□□□□□ -0.54
LIMA1-216ENST00000552909 KIF14Q15058 1648 aa11.68□□□□□ -0.54
LIMA1-216ENST00000552909 ACIN1Q9UKV3 1341 aaKnown RBP11.68□□□□□ -0.54
LIMA1-216ENST00000552909 VPS8Q8N3P4 1428 aa11.64□□□□□ -0.55
LIMA1-216ENST00000552909 RAPGEF3O95398 923 aa11.64□□□□□ -0.55
LIMA1-216ENST00000552909 PLCH2O75038 1416 aa11.63□□□□□ -0.55
LIMA1-216ENST00000552909 FANCAO15360 1455 aa11.63□□□□□ -0.55
LIMA1-216ENST00000552909 ARAP3Q8WWN8 1544 aa11.63□□□□□ -0.55
LIMA1-216ENST00000552909 NEO1Q92859 1461 aa11.62□□□□□ -0.55
LIMA1-216ENST00000552909 AKNAQ7Z591 1439 aa11.62□□□□□ -0.55
LIMA1-216ENST00000552909 MTUS2Q5JR59 1369 aa11.61□□□□□ -0.55
LIMA1-216ENST00000552909 NEUROD1Q13562 356 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms