RNA–Protein interactions for RNA: ENST00000551260.5

RACGAP1-223, Transcript of Rac GTPase activating protein 1, human

TSL 4

Gene RACGAP1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RACGAP1-223	ENST00000551260	SNAPC4	Q5SXM2	1469 aa		11.76	□□□□□ -0.53
RACGAP1-223	ENST00000551260	TOP2A	P11388	1531 aa	Known RBP	11.76	□□□□□ -0.53
RACGAP1-223	ENST00000551260	ERCC6L2	Q5T890	1561 aa		11.75	□□□□□ -0.53
RACGAP1-223	ENST00000551260	ABCC8	Q09428	1581 aa		11.72	□□□□□ -0.53
RACGAP1-223	ENST00000551260	RAD54L2	Q9Y4B4	1467 aa		11.72	□□□□□ -0.53
RACGAP1-223	ENST00000551260	MYCN	P04198	464 aa	Predicted RBP	11.72	□□□□□ -0.53
RACGAP1-223	ENST00000551260	POLA1	P09884	1462 aa	Predicted RBP	11.71	□□□□□ -0.53
RACGAP1-223	ENST00000551260	TDRD9	Q8NDG6	1382 aa	Known RBP	11.71	□□□□□ -0.53
RACGAP1-223	ENST00000551260	TSPOAP1	O95153	1857 aa		11.69	□□□□□ -0.54
RACGAP1-223	ENST00000551260	PBRM1	Q86U86	1689 aa		11.68	□□□□□ -0.54
RACGAP1-223	ENST00000551260	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.68	□□□□□ -0.54
RACGAP1-223	ENST00000551260	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.66	□□□□□ -0.54
RACGAP1-223	ENST00000551260	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.66	□□□□□ -0.54
RACGAP1-223	ENST00000551260	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.66	□□□□□ -0.54
RACGAP1-223	ENST00000551260	MAGI1	Q96QZ7	1491 aa	Predicted RBP	11.64	□□□□□ -0.55
RACGAP1-223	ENST00000551260	HECW2	Q9P2P5	1572 aa		11.64	□□□□□ -0.55
RACGAP1-223	ENST00000551260	KDM6B	O15054	1643 aa		11.64	□□□□□ -0.55
RACGAP1-223	ENST00000551260	CCDC88B	A6NC98	1476 aa		11.63	□□□□□ -0.55
RACGAP1-223	ENST00000551260	SYNJ2	O15056	1496 aa		11.63	□□□□□ -0.55
RACGAP1-223	ENST00000551260	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.62	□□□□□ -0.55
RACGAP1-223	ENST00000551260	SOGA1	O94964	1423 aa		11.61	□□□□□ -0.55
RACGAP1-223	ENST00000551260	WDR97	A6NE52	1622 aa		11.61	□□□□□ -0.55
RACGAP1-223	ENST00000551260	CEP170	Q5SW79	1584 aa		11.6	□□□□□ -0.55
RACGAP1-223	ENST00000551260	EHMT2	Q96KQ7	1210 aa		11.59	□□□□□ -0.55
RACGAP1-223	ENST00000551260	GRIN2B	Q13224	1484 aa		11.58	□□□□□ -0.56
RACGAP1-223	ENST00000551260	CSRNP3	Q8WYN3	585 aa		11.58	□□□□□ -0.56
RACGAP1-223	ENST00000551260	CAPN15	O75808	1086 aa		11.57	□□□□□ -0.56
RACGAP1-223	ENST00000551260	FGD5	Q6ZNL6	1462 aa		11.57	□□□□□ -0.56
RACGAP1-223	ENST00000551260	DIP2B	Q9P265	1576 aa		11.56	□□□□□ -0.56
RACGAP1-223	ENST00000551260	APLP2	Q06481	763 aa		11.55	□□□□□ -0.56
RACGAP1-223	ENST00000551260	SHROOM2	Q13796	1616 aa		11.54	□□□□□ -0.56
RACGAP1-223	ENST00000551260	FAM69C	Q0P6D2	419 aa		11.54	□□□□□ -0.56
RACGAP1-223	ENST00000551260	ADGRL1	O94910	1474 aa		11.54	□□□□□ -0.56
RACGAP1-223	ENST00000551260	ABCC10	Q5T3U5	1492 aa		11.53	□□□□□ -0.56
RACGAP1-223	ENST00000551260	FBXO41	Q8TF61	875 aa		11.51	□□□□□ -0.57
RACGAP1-223	ENST00000551260	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.48	□□□□□ -0.57
RACGAP1-223	ENST00000551260	ABCA5	Q8WWZ7	1642 aa		11.47	□□□□□ -0.57
RACGAP1-223	ENST00000551260	CUX1	P39880	1505 aa		11.47	□□□□□ -0.57
RACGAP1-223	ENST00000551260	GRIN2A	Q12879	1464 aa		11.47	□□□□□ -0.57
RACGAP1-223	ENST00000551260	LMTK3	Q96Q04	1460 aa		11.46	□□□□□ -0.57
RACGAP1-223	ENST00000551260	DSG3	P32926	999 aa		11.46	□□□□□ -0.57
RACGAP1-223	ENST00000551260	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.46	□□□□□ -0.57
RACGAP1-223	ENST00000551260	MAPKBP1	O60336	1514 aa		11.45	□□□□□ -0.58
RACGAP1-223	ENST00000551260	PPRC1	Q5VV67	1664 aa	Known RBP	11.45	□□□□□ -0.58
RACGAP1-223	ENST00000551260	ADCY10	Q96PN6	1610 aa		11.45	□□□□□ -0.58
RACGAP1-223	ENST00000551260	ADAMTS12	P58397	1594 aa		11.43	□□□□□ -0.58
RACGAP1-223	ENST00000551260	NUP160	Q12769	1436 aa		11.43	□□□□□ -0.58
RACGAP1-223	ENST00000551260	ATXN8OS	P0DMR3	200 aa		11.41	□□□□□ -0.58
RACGAP1-223	ENST00000551260	ILDR2	Q71H61	639 aa		11.39	□□□□□ -0.59
RACGAP1-223	ENST00000551260	PRG4	Q92954	1404 aa	Predicted RBP	11.39	□□□□□ -0.59
RACGAP1-223	ENST00000551260	ABCB7	O75027	752 aa		11.36	□□□□□ -0.59
RACGAP1-223	ENST00000551260	NPM1	P06748	294 aa	Known RBP eCLIP	11.35	□□□□□ -0.59
RACGAP1-223	ENST00000551260	ABCA10	Q8WWZ4	1543 aa		11.35	□□□□□ -0.59
RACGAP1-223	ENST00000551260	SOCS7	O14512	581 aa		11.33	□□□□□ -0.6
RACGAP1-223	ENST00000551260	COL17A1	Q9UMD9	1497 aa	Predicted RBP	11.32	□□□□□ -0.6
RACGAP1-223	ENST00000551260	JPH4	Q96JJ6	628 aa		11.29	□□□□□ -0.6
RACGAP1-223	ENST00000551260	RUSC2	Q8N2Y8	1516 aa		11.29	□□□□□ -0.6
RACGAP1-223	ENST00000551260	CUL7	Q14999	1698 aa		11.28	□□□□□ -0.6
RACGAP1-223	ENST00000551260	POLA2	Q14181	598 aa		11.28	□□□□□ -0.6
RACGAP1-223	ENST00000551260	TOP2B	Q02880	1626 aa		11.27	□□□□□ -0.6
RACGAP1-223	ENST00000551260	FHAD1	B1AJZ9	1412 aa		11.26	□□□□□ -0.61
RACGAP1-223	ENST00000551260	DISP3	Q9P2K9	1392 aa		11.26	□□□□□ -0.61
RACGAP1-223	ENST00000551260	KIF21B	O75037	1637 aa		11.24	□□□□□ -0.61
RACGAP1-223	ENST00000551260	GLI2	P10070	1586 aa		11.24	□□□□□ -0.61
RACGAP1-223	ENST00000551260	MAP3K4	Q9Y6R4	1608 aa		11.24	□□□□□ -0.61
RACGAP1-223	ENST00000551260	ERICH3	Q5RHP9	1530 aa		11.19	□□□□□ -0.62
RACGAP1-223	ENST00000551260	ASXL2	Q76L83	1435 aa		11.18	□□□□□ -0.62
RACGAP1-223	ENST00000551260	SPATA31D1	Q6ZQQ2	1576 aa		11.18	□□□□□ -0.62
RACGAP1-223	ENST00000551260	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.16	□□□□□ -0.62
RACGAP1-223	ENST00000551260	ABCC2	Q92887	1545 aa		11.15	□□□□□ -0.62
RACGAP1-223	ENST00000551260	BIVM-ERCC5	R4GMW8	1640 aa		11.14	□□□□□ -0.63
RACGAP1-223	ENST00000551260	ADAMTSL3	P82987	1691 aa		11.14	□□□□□ -0.63
RACGAP1-223	ENST00000551260	PLB1	Q6P1J6	1458 aa		11.13	□□□□□ -0.63
RACGAP1-223	ENST00000551260	PCF11	O94913	1555 aa	Known RBP	11.13	□□□□□ -0.63
RACGAP1-223	ENST00000551260	WRN	Q14191	1432 aa	Predicted RBP eCLIP	11.13	□□□□□ -0.63
RACGAP1-223	ENST00000551260	TEX14	Q8IWB6	1497 aa		11.12	□□□□□ -0.63
RACGAP1-223	ENST00000551260	EPRS	P07814	1512 aa	Known RBP	11.12	□□□□□ -0.63
RACGAP1-223	ENST00000551260	PTPRM	P28827	1452 aa		11.12	□□□□□ -0.63
RACGAP1-223	ENST00000551260	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.09	□□□□□ -0.63
RACGAP1-223	ENST00000551260	CERK	Q8TCT0	537 aa		11.09	□□□□□ -0.63
RACGAP1-223	ENST00000551260	PTPRG	P23470	1445 aa		11.09	□□□□□ -0.63
RACGAP1-223	ENST00000551260	MADD	Q8WXG6	1647 aa		11.07	□□□□□ -0.64
RACGAP1-223	ENST00000551260	KIAA0586	Q9BVV6	1533 aa		11.06	□□□□□ -0.64
RACGAP1-223	ENST00000551260	BCORL1	Q5H9F3	1711 aa		11.06	□□□□□ -0.64
RACGAP1-223	ENST00000551260	RIMS1	Q86UR5	1692 aa	Known RBP	11.05	□□□□□ -0.64
RACGAP1-223	ENST00000551260	HSPA2	P54652	639 aa		11.04	□□□□□ -0.64
RACGAP1-223	ENST00000551260	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.04	□□□□□ -0.64
RACGAP1-223	ENST00000551260	CFAP43	Q8NDM7	1665 aa		11.04	□□□□□ -0.64
RACGAP1-223	ENST00000551260	UHRF1BP1L	A0JNW5	1464 aa		11.02	□□□□□ -0.65
RACGAP1-223	ENST00000551260	KDM5B	Q9UGL1	1544 aa		11	□□□□□ -0.65
RACGAP1-223	ENST00000551260	TNIK	Q9UKE5	1360 aa		11	□□□□□ -0.65
RACGAP1-223	ENST00000551260	UACA	Q9BZF9	1416 aa		10.99	□□□□□ -0.65
RACGAP1-223	ENST00000551260	MKRN4P	Q13434	485 aa	Predicted RBP	10.98	□□□□□ -0.65
RACGAP1-223	ENST00000551260	MAGI3	Q5TCQ9	1506 aa		10.96	□□□□□ -0.65
RACGAP1-223	ENST00000551260	WDR7	Q9Y4E6	1490 aa		10.95	□□□□□ -0.66
RACGAP1-223	ENST00000551260	CD109	Q6YHK3	1445 aa		10.95	□□□□□ -0.66
RACGAP1-223	ENST00000551260	STRC	Q7RTU9	1775 aa		10.95	□□□□□ -0.66
RACGAP1-223	ENST00000551260	CARMIL2	Q6F5E8	1435 aa		10.94	□□□□□ -0.66
RACGAP1-223	ENST00000551260	IQGAP2	Q13576	1575 aa		10.93	□□□□□ -0.66
RACGAP1-223	ENST00000551260	DISP1	Q96F81	1524 aa		10.92	□□□□□ -0.66

Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms