RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 CCNB3Q8WWL7 1395 aa20.78■□□□□ 0.92
CUX1-214ENST00000550008 FKBP8Q14318 412 aa20.77■□□□□ 0.92
CUX1-214ENST00000550008 KCNH8Q96L42 1107 aa20.76■□□□□ 0.91
CUX1-214ENST00000550008 TSPY4P0CV99 314 aa20.74■□□□□ 0.91
CUX1-214ENST00000550008 TSPY10P0CW01 314 aa20.74■□□□□ 0.91
CUX1-214ENST00000550008 SENP3-EIF4A1A0A087X0R7 540 aa20.73■□□□□ 0.91
CUX1-214ENST00000550008 SALL2Q9Y467 1007 aaPredicted RBP20.71■□□□□ 0.91
CUX1-214ENST00000550008 CHGAP10645 457 aaKnown RBP20.69■□□□□ 0.9
CUX1-214ENST00000550008 CADPSQ9ULU8 1353 aa20.68■□□□□ 0.9
CUX1-214ENST00000550008 CFDP1Q9UEE9 299 aaPredicted RBP20.67■□□□□ 0.9
CUX1-214ENST00000550008 PLEKHD1A6NEE1 506 aa20.65■□□□□ 0.9
CUX1-214ENST00000550008 EIF4G1Q04637 1599 aaKnown RBP20.65■□□□□ 0.9
CUX1-214ENST00000550008 SENP3Q9H4L4 574 aaPredicted RBP20.63■□□□□ 0.89
CUX1-214ENST00000550008 IRX6P78412 446 aaPredicted RBP20.62■□□□□ 0.89
CUX1-214ENST00000550008 RGL3Q3MIN7 710 aa20.61■□□□□ 0.89
CUX1-214ENST00000550008 FHAD1B1AJZ9 1412 aa20.6■□□□□ 0.89
CUX1-214ENST00000550008 EIF4G2P78344 907 aaKnown RBP eCLIP20.6■□□□□ 0.891e-6■■■■■ 34
CUX1-214ENST00000550008 MRS2Q9HD23 443 aa20.59■□□□□ 0.89
CUX1-214ENST00000550008 ERCC6Q03468 1493 aa20.59■□□□□ 0.89
CUX1-214ENST00000550008 FOXD1Q16676 465 aa20.56■□□□□ 0.88
CUX1-214ENST00000550008 DAXXQ9UER7 740 aaPredicted RBP20.56■□□□□ 0.88
CUX1-214ENST00000550008 CLSPNQ9HAW4 1339 aa20.56■□□□□ 0.88
CUX1-214ENST00000550008 FHOD3Q2V2M9 1422 aa20.56■□□□□ 0.88
CUX1-214ENST00000550008 RAB3GAP2Q9H2M9 1393 aa20.52■□□□□ 0.88
CUX1-214ENST00000550008 NPM1P06748 294 aaKnown RBP eCLIP20.52■□□□□ 0.87
CUX1-214ENST00000550008 TMC1Q8TDI8 760 aa20.5■□□□□ 0.87
CUX1-214ENST00000550008 PLPPR3Q6T4P5 718 aa20.47■□□□□ 0.87
CUX1-214ENST00000550008 SETD5Q9C0A6 1442 aa20.46■□□□□ 0.87
CUX1-214ENST00000550008 PDS5BQ9NTI5 1447 aa20.46■□□□□ 0.87
CUX1-214ENST00000550008 BCL11AQ9H165 835 aa20.44■□□□□ 0.86
CUX1-214ENST00000550008 FANCD2Q9BXW9 1451 aa20.42■□□□□ 0.86
CUX1-214ENST00000550008 IGF1RP08069 1367 aa20.42■□□□□ 0.86
CUX1-214ENST00000550008 ARHGAP35Q9NRY4 1499 aa20.41■□□□□ 0.86
CUX1-214ENST00000550008 RAD54L2Q9Y4B4 1467 aa20.38■□□□□ 0.85
CUX1-214ENST00000550008 SYNJ1O43426 1573 aa20.35■□□□□ 0.85
CUX1-214ENST00000550008 FGD5Q6ZNL6 1462 aa20.34■□□□□ 0.85
CUX1-214ENST00000550008 CARD11Q9BXL7 1154 aa20.34■□□□□ 0.85
CUX1-214ENST00000550008 CANXP27824 592 aaKnown RBP20.34■□□□□ 0.85
CUX1-214ENST00000550008 STAG3Q9UJ98 1225 aa20.34■□□□□ 0.85
CUX1-214ENST00000550008 NCAPD3P42695 1498 aa20.33■□□□□ 0.85
CUX1-214ENST00000550008 DHX57Q6P158 1386 aaKnown RBP20.32■□□□□ 0.84
CUX1-214ENST00000550008 FMN1Q68DA7 1419 aa20.32■□□□□ 0.84
CUX1-214ENST00000550008 NPM2Q86SE8 214 aaKnown RBP20.3■□□□□ 0.84
CUX1-214ENST00000550008 SUPT16HQ9Y5B9 1047 aaKnown RBP20.3■□□□□ 0.84
CUX1-214ENST00000550008 HSPA5P11021 654 aaKnown RBP20.26■□□□□ 0.83
CUX1-214ENST00000550008 DCAF11Q8TEB1 546 aa20.26■□□□□ 0.83
CUX1-214ENST00000550008 MPHOSPH9Q99550 1183 aa20.26■□□□□ 0.83
CUX1-214ENST00000550008 PKD2Q13563 968 aa20.25■□□□□ 0.83
CUX1-214ENST00000550008 PPP1R15AO75807 674 aaPredicted RBP20.25■□□□□ 0.83
CUX1-214ENST00000550008 RTL5Q5HYW3 569 aaPredicted RBP20.24■□□□□ 0.83
CUX1-214ENST00000550008 KIF21BO75037 1637 aa20.24■□□□□ 0.83
CUX1-214ENST00000550008 ESF1Q9H501 851 aaKnown RBP20.24■□□□□ 0.83
CUX1-214ENST00000550008 CCDC136Q96JN2 1154 aa20.23■□□□□ 0.83
CUX1-214ENST00000550008 DNAJC5BQ9UF47 199 aa20.23■□□□□ 0.83
CUX1-214ENST00000550008 SLC24A1O60721 1099 aa20.22■□□□□ 0.83
CUX1-214ENST00000550008 NESP48681 1621 aa20.21■□□□□ 0.83
CUX1-214ENST00000550008 ARAP1Q96P48 1450 aa20.19■□□□□ 0.82
CUX1-214ENST00000550008 JPH4Q96JJ6 628 aa20.19■□□□□ 0.82
CUX1-214ENST00000550008 L3MBTL2Q969R5 705 aa20.18■□□□□ 0.82
CUX1-214ENST00000550008 BICRAQ9NZM4 1560 aa20.18■□□□□ 0.82
CUX1-214ENST00000550008 TIMELESSQ9UNS1 1208 aa20.17■□□□□ 0.82
CUX1-214ENST00000550008 WDR43Q15061 677 aaKnown RBP eCLIP20.17■□□□□ 0.82
CUX1-214ENST00000550008 HNRNPMP52272 730 aaKnown RBP eCLIP20.16■□□□□ 0.829e-7■■■□□ 19.2
CUX1-214ENST00000550008 PHLDB1Q86UU1 1377 aa20.15■□□□□ 0.82
CUX1-214ENST00000550008 CFTRP13569 1480 aa20.15■□□□□ 0.82
CUX1-214ENST00000550008 NEFMP07197 916 aa20.11■□□□□ 0.81
CUX1-214ENST00000550008 CC2D1BQ5T0F9 858 aaKnown RBP20.11■□□□□ 0.81
CUX1-214ENST00000550008 AQRO60306 1485 aaKnown RBP eCLIP20.11■□□□□ 0.814e-7■■■■□ 26.1
CUX1-214ENST00000550008 GAPVD1Q14C86 1478 aa20.11■□□□□ 0.81
CUX1-214ENST00000550008 NUP155O75694 1391 aa20.1■□□□□ 0.81
CUX1-214ENST00000550008 CARMIL2Q6F5E8 1435 aa20.1■□□□□ 0.81
CUX1-214ENST00000550008 ZNF644Q9H582 1327 aaPredicted RBP20.09■□□□□ 0.81
CUX1-214ENST00000550008 CUX1P39880 1505 aa20.09■□□□□ 0.81
CUX1-214ENST00000550008 ANP32AP39687 249 aaKnown RBP20.08■□□□□ 0.81
CUX1-214ENST00000550008 PRXQ9BXM0 1461 aa20.05■□□□□ 0.8
CUX1-214ENST00000550008 TNNT2P45379 298 aaPredicted RBP20.04■□□□□ 0.8
CUX1-214ENST00000550008 KNSTRNQ9Y448 316 aa20.03■□□□□ 0.8
CUX1-214ENST00000550008 NEUROD2Q15784 382 aa20.01■□□□□ 0.79
CUX1-214ENST00000550008 B4GALNT3Q6L9W6 998 aa20■□□□□ 0.79
CUX1-214ENST00000550008 GGT6Q6P531 493 aa19.99■□□□□ 0.79
CUX1-214ENST00000550008 PLEKHG5O94827 1062 aa19.99■□□□□ 0.79
CUX1-214ENST00000550008 TOP2BQ02880 1626 aa19.98■□□□□ 0.79
CUX1-214ENST00000550008 CCER2I3L3R5 266 aa19.98■□□□□ 0.79
CUX1-214ENST00000550008 LRRC9Q6ZRR7 1453 aa19.97■□□□□ 0.79
CUX1-214ENST00000550008 ANKRD30AQ9BXX3 1397 aa19.96■□□□□ 0.79
CUX1-214ENST00000550008 ZBTB47Q9UFB7 747 aaPredicted RBP19.95■□□□□ 0.78
CUX1-214ENST00000550008 CCDC18Q5T9S5 1454 aa19.95■□□□□ 0.78
CUX1-214ENST00000550008 CC2D2AQ9P2K1 1620 aa19.95■□□□□ 0.78
CUX1-214ENST00000550008 SAFB2Q14151 953 aaKnown RBP eCLIP19.95■□□□□ 0.78
CUX1-214ENST00000550008 FGD6Q6ZV73 1430 aa19.93■□□□□ 0.78
CUX1-214ENST00000550008 NBR1Q14596 966 aa19.93■□□□□ 0.78
CUX1-214ENST00000550008 PPM1GO15355 546 aaPredicted RBP19.92■□□□□ 0.78
CUX1-214ENST00000550008 EFCAB2Q5VUJ9 269 aa19.92■□□□□ 0.78
CUX1-214ENST00000550008 MLECQ14165 292 aa19.91■□□□□ 0.78
CUX1-214ENST00000550008 ERICH3Q5RHP9 1530 aa19.91■□□□□ 0.78
CUX1-214ENST00000550008 POLA1P09884 1462 aaPredicted RBP19.91■□□□□ 0.78
CUX1-214ENST00000550008 HMGXB3Q12766 1538 aa19.89■□□□□ 0.77
CUX1-214ENST00000550008 KIF3BO15066 747 aa19.88■□□□□ 0.77
CUX1-214ENST00000550008 TOPBP1Q92547 1522 aa19.88■□□□□ 0.77
CUX1-214ENST00000550008 TMF1P82094 1093 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms