RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 KIAA0586Q9BVV6 1533 aa34.73■■■■□ 3.15
VPS29-206ENST00000549578 CTTNBP2Q8WZ74 1663 aa34.69■■■■□ 3.14
VPS29-206ENST00000549578 IQGAP2Q13576 1575 aa34.65■■■■□ 3.14
VPS29-206ENST00000549578 UBTFP17480 764 aaKnown RBP34.64■■■■□ 3.14
VPS29-206ENST00000549578 SHROOM2Q13796 1616 aa34.58■■■■□ 3.13
VPS29-206ENST00000549578 JPH4Q96JJ6 628 aa34.57■■■■□ 3.12
VPS29-206ENST00000549578 DNAJC5Q9H3Z4 198 aa34.56■■■■□ 3.12
VPS29-206ENST00000549578 LOC105371045A0A1W2PR82 267 aa34.54■■■■□ 3.12
VPS29-206ENST00000549578 PRG4Q92954 1404 aaPredicted RBP34.48■■■■□ 3.11
VPS29-206ENST00000549578 UGGT2Q9NYU1 1516 aa34.46■■■■□ 3.11
VPS29-206ENST00000549578 ERCC6L2Q5T890 1561 aa34.46■■■■□ 3.11
VPS29-206ENST00000549578 ARHGEF11O15085 1522 aa34.45■■■■□ 3.11
VPS29-206ENST00000549578 RANGAP1P46060 587 aaPredicted RBP34.43■■■■□ 3.1
VPS29-206ENST00000549578 TNIKQ9UKE5 1360 aa34.41■■■■□ 3.1
VPS29-206ENST00000549578 RIMBP3CA6NJZ7 1639 aa34.4■■■■□ 3.1
VPS29-206ENST00000549578 RIMBP3BA6NNM3 1639 aa34.4■■■■□ 3.1
VPS29-206ENST00000549578 RIMBP3Q9UFD9 1639 aa34.4■■■■□ 3.1
VPS29-206ENST00000549578 DISP1Q96F81 1524 aa34.37■■■■□ 3.09
VPS29-206ENST00000549578 CARMIL2Q6F5E8 1435 aa34.33■■■■□ 3.09
VPS29-206ENST00000549578 KIAA0556O60303 1618 aa34.31■■■■□ 3.08
VPS29-206ENST00000549578 SAMD9Q5K651 1589 aa34.28■■■■□ 3.08
VPS29-206ENST00000549578 P3H3Q8IVL6 736 aa34.24■■■■□ 3.07
VPS29-206ENST00000549578 ARAP1Q96P48 1450 aa34.23■■■■□ 3.07
VPS29-206ENST00000549578 EFCAB5A4FU69 1503 aa34.22■■■■□ 3.07
VPS29-206ENST00000549578 TTBK1Q5TCY1 1321 aaPredicted RBP34.18■■■■□ 3.06
VPS29-206ENST00000549578 ARHGAP35Q9NRY4 1499 aa34.18■■■■□ 3.06
VPS29-206ENST00000549578 CEP162Q5TB80 1403 aa34.17■■■■□ 3.06
VPS29-206ENST00000549578 CLIP1P30622 1438 aa34.16■■■■□ 3.06
VPS29-206ENST00000549578 FHOD3Q2V2M9 1422 aa34.14■■■■□ 3.06
VPS29-206ENST00000549578 PTPRGP23470 1445 aa34.13■■■■□ 3.05
VPS29-206ENST00000549578 CYB5RLQ6IPT4 315 aa34.12■■■■□ 3.05
VPS29-206ENST00000549578 PLB1Q6P1J6 1458 aa33.95■■■■□ 3.02
VPS29-206ENST00000549578 UACAQ9BZF9 1416 aa33.92■■■■□ 3.02
VPS29-206ENST00000549578 ADCY10Q96PN6 1610 aa33.89■■■■□ 3.02
VPS29-206ENST00000549578 ABCA8O94911 1581 aa33.89■■■■□ 3.02
VPS29-206ENST00000549578 FMN1Q68DA7 1419 aa33.89■■■■□ 3.02
VPS29-206ENST00000549578 ABCC2Q92887 1545 aa33.85■■■■□ 3.01
VPS29-206ENST00000549578 RAPGEF6Q8TEU7 1601 aa33.84■■■■□ 3.01
VPS29-206ENST00000549578 UHRF1BP1LA0JNW5 1464 aa33.83■■■■□ 3.01
VPS29-206ENST00000549578 PCF11O94913 1555 aaKnown RBP33.75■■■□□ 2.99
VPS29-206ENST00000549578 NUP153P49790 1475 aaKnown RBP33.73■■■□□ 2.99
VPS29-206ENST00000549578 ARID3CA6NKF2 412 aa33.72■■■□□ 2.99
VPS29-206ENST00000549578 ATP1B4Q9UN42 357 aaPredicted RBP33.71■■■□□ 2.99
VPS29-206ENST00000549578 VPS8Q8N3P4 1428 aa33.7■■■□□ 2.99
VPS29-206ENST00000549578 CASKIN1Q8WXD9 1431 aa33.7■■■□□ 2.99
VPS29-206ENST00000549578 HECW1Q76N89 1606 aa33.69■■■□□ 2.98
VPS29-206ENST00000549578 KDM5BQ9UGL1 1544 aa33.68■■■□□ 2.98
VPS29-206ENST00000549578 NPM1P06748 294 aaKnown RBP eCLIP33.66■■■□□ 2.98
VPS29-206ENST00000549578 FYCO1Q9BQS8 1478 aa33.66■■■□□ 2.98
VPS29-206ENST00000549578 ZCCHC11Q5TAX3 1644 aaKnown RBP33.65■■■□□ 2.98
VPS29-206ENST00000549578 ATP10BO94823 1461 aa33.63■■■□□ 2.97
VPS29-206ENST00000549578 LRRIQ1Q96JM4 1722 aa33.59■■■□□ 2.97
VPS29-206ENST00000549578 EPRSP07814 1512 aaKnown RBP33.58■■■□□ 2.97
VPS29-206ENST00000549578 CDK13Q14004 1512 aaKnown RBP33.58■■■□□ 2.97
VPS29-206ENST00000549578 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.55■■■□□ 2.96
VPS29-206ENST00000549578 HNRNPUL2Q1KMD3 747 aaKnown RBP33.55■■■□□ 2.96
VPS29-206ENST00000549578 MAPKBP1O60336 1514 aa33.51■■■□□ 2.95
VPS29-206ENST00000549578 CCDC18Q5T9S5 1454 aa33.49■■■□□ 2.95
VPS29-206ENST00000549578 ASXL2Q76L83 1435 aa33.48■■■□□ 2.95
VPS29-206ENST00000549578 WDR7Q9Y4E6 1490 aa33.4■■■□□ 2.94
VPS29-206ENST00000549578 PLEKHD1A6NEE1 506 aa33.37■■■□□ 2.93
VPS29-206ENST00000549578 CFAP43Q8NDM7 1665 aa33.36■■■□□ 2.93
VPS29-206ENST00000549578 TIAM1Q13009 1591 aa33.35■■■□□ 2.93
VPS29-206ENST00000549578 CDK11AQ9UQ88 783 aaPredicted RBP33.34■■■□□ 2.93
VPS29-206ENST00000549578 MAGI3Q5TCQ9 1506 aa33.33■■■□□ 2.93
VPS29-206ENST00000549578 KCNH8Q96L42 1107 aa33.31■■■□□ 2.92
VPS29-206ENST00000549578 ABCC10Q5T3U5 1492 aa33.29■■■□□ 2.92
VPS29-206ENST00000549578 APLP2Q06481 763 aa33.28■■■□□ 2.92
VPS29-206ENST00000549578 MAP3K1Q13233 1512 aa33.28■■■□□ 2.92
VPS29-206ENST00000549578 DIP2BQ9P265 1576 aa33.28■■■□□ 2.92
VPS29-206ENST00000549578 TROQ12816 1431 aaPredicted RBP33.27■■■□□ 2.92
VPS29-206ENST00000549578 MTUS2Q5JR59 1369 aa33.24■■■□□ 2.91
VPS29-206ENST00000549578 TRHP20396 242 aaPredicted RBP33.23■■■□□ 2.91
VPS29-206ENST00000549578 KIF13AQ9H1H9 1805 aa33.22■■■□□ 2.91
VPS29-206ENST00000549578 FAM69CQ0P6D2 419 aa33.22■■■□□ 2.91
VPS29-206ENST00000549578 LRRC9Q6ZRR7 1453 aa33.19■■■□□ 2.9
VPS29-206ENST00000549578 KANK4Q5T7N3 995 aaPredicted RBP33.19■■■□□ 2.9
VPS29-206ENST00000549578 EHBP1L1Q8N3D4 1523 aa33.19■■■□□ 2.9
VPS29-206ENST00000549578 KIF14Q15058 1648 aa33.19■■■□□ 2.9
VPS29-206ENST00000549578 GLI2P10070 1586 aa33.17■■■□□ 2.9
VPS29-206ENST00000549578 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.13■■■□□ 2.89
VPS29-206ENST00000549578 ABCA9Q8IUA7 1624 aa33.11■■■□□ 2.89
VPS29-206ENST00000549578 TTC37Q6PGP7 1564 aa33.1■■■□□ 2.89
VPS29-206ENST00000549578 MAP3K4Q9Y6R4 1608 aa33.08■■■□□ 2.89
VPS29-206ENST00000549578 SUPT6HQ7KZ85 1726 aaKnown RBP33.04■■■□□ 2.88
VPS29-206ENST00000549578 CD109Q6YHK3 1445 aa33.03■■■□□ 2.88
VPS29-206ENST00000549578 PPARGC1BQ86YN6 1023 aaKnown RBP33.03■■■□□ 2.88
VPS29-206ENST00000549578 TSPOAP1O95153 1857 aa33.01■■■□□ 2.88
VPS29-206ENST00000549578 NCOA2Q15596 1464 aa33.01■■■□□ 2.87
VPS29-206ENST00000549578 MYO5CQ9NQX4 1742 aa32.95■■■□□ 2.87
VPS29-206ENST00000549578 PPRC1Q5VV67 1664 aaKnown RBP32.95■■■□□ 2.86
VPS29-206ENST00000549578 CCNB3Q8WWL7 1395 aa32.93■■■□□ 2.86
VPS29-206ENST00000549578 CDC42BPAQ5VT25 1732 aa32.92■■■□□ 2.86
VPS29-206ENST00000549578 PLCH2O75038 1416 aa32.91■■■□□ 2.86
VPS29-206ENST00000549578 GPATCH8Q9UKJ3 1502 aaKnown RBP32.9■■■□□ 2.86
VPS29-206ENST00000549578 PREX2Q70Z35 1606 aa32.89■■■□□ 2.86
VPS29-206ENST00000549578 CDC42BPBQ9Y5S2 1711 aa32.86■■■□□ 2.85
VPS29-206ENST00000549578 TEX14Q8IWB6 1497 aa32.85■■■□□ 2.85
VPS29-206ENST00000549578 ARHGAP5Q13017 1502 aa32.85■■■□□ 2.85
VPS29-206ENST00000549578 PHLDB1Q86UU1 1377 aa32.84■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms