RNA–Protein interactions for RNA: ENST00000549274.1

SMARCD1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-206ENST00000549274 NUP160Q12769 1436 aa15.9■□□□□ 0.14
SMARCD1-206ENST00000549274 CTTNBP2Q8WZ74 1663 aa15.89■□□□□ 0.13
SMARCD1-206ENST00000549274 OSCARQ8IYS5 282 aa15.88■□□□□ 0.13
SMARCD1-206ENST00000549274 KIAA0586Q9BVV6 1533 aa15.85■□□□□ 0.13
SMARCD1-206ENST00000549274 CEP170Q5SW79 1584 aa15.85■□□□□ 0.13
SMARCD1-206ENST00000549274 IQGAP2Q13576 1575 aa15.83■□□□□ 0.12
SMARCD1-206ENST00000549274 UBTFP17480 764 aaKnown RBP15.82■□□□□ 0.12
SMARCD1-206ENST00000549274 CLASP1Q7Z460 1538 aa15.82■□□□□ 0.12
SMARCD1-206ENST00000549274 TNIKQ9UKE5 1360 aa15.79■□□□□ 0.12
SMARCD1-206ENST00000549274 SHROOM2Q13796 1616 aa15.76■□□□□ 0.11
SMARCD1-206ENST00000549274 UGGT2Q9NYU1 1516 aa15.74■□□□□ 0.11
SMARCD1-206ENST00000549274 EFCAB5A4FU69 1503 aa15.73■□□□□ 0.11
SMARCD1-206ENST00000549274 CARMIL2Q6F5E8 1435 aa15.73■□□□□ 0.11
SMARCD1-206ENST00000549274 JPH4Q96JJ6 628 aa15.72■□□□□ 0.11
SMARCD1-206ENST00000549274 EHMT2Q96KQ7 1210 aa15.67■□□□□ 0.1
SMARCD1-206ENST00000549274 PRG4Q92954 1404 aaPredicted RBP15.66■□□□□ 0.1
SMARCD1-206ENST00000549274 SAMD9Q5K651 1589 aa15.66■□□□□ 0.1
SMARCD1-206ENST00000549274 KIAA0556O60303 1618 aa15.65■□□□□ 0.1
SMARCD1-206ENST00000549274 LOC105371045A0A1W2PR82 267 aa15.64■□□□□ 0.09
SMARCD1-206ENST00000549274 CLIP1P30622 1438 aa15.63■□□□□ 0.09
SMARCD1-206ENST00000549274 CEP162Q5TB80 1403 aa15.63■□□□□ 0.09
SMARCD1-206ENST00000549274 DISP1Q96F81 1524 aa15.61■□□□□ 0.09
SMARCD1-206ENST00000549274 ARHGEF11O15085 1522 aa15.59■□□□□ 0.09
SMARCD1-206ENST00000549274 FMN1Q68DA7 1419 aa15.57■□□□□ 0.08
SMARCD1-206ENST00000549274 ARHGAP35Q9NRY4 1499 aa15.57■□□□□ 0.08
SMARCD1-206ENST00000549274 RIMBP3CA6NJZ7 1639 aa15.56■□□□□ 0.08
SMARCD1-206ENST00000549274 RIMBP3BA6NNM3 1639 aa15.56■□□□□ 0.08
SMARCD1-206ENST00000549274 RIMBP3Q9UFD9 1639 aa15.56■□□□□ 0.08
SMARCD1-206ENST00000549274 PTPRGP23470 1445 aa15.54■□□□□ 0.08
SMARCD1-206ENST00000549274 RANGAP1P46060 587 aaPredicted RBP15.53■□□□□ 0.08
SMARCD1-206ENST00000549274 DNAJC5Q9H3Z4 198 aa15.53■□□□□ 0.08
SMARCD1-206ENST00000549274 ERCC6L2Q5T890 1561 aa15.51■□□□□ 0.07
SMARCD1-206ENST00000549274 FHOD3Q2V2M9 1422 aa15.51■□□□□ 0.07
SMARCD1-206ENST00000549274 ARAP1Q96P48 1450 aa15.48■□□□□ 0.07
SMARCD1-206ENST00000549274 P3H3Q8IVL6 736 aa15.47■□□□□ 0.07
SMARCD1-206ENST00000549274 UACAQ9BZF9 1416 aa15.46■□□□□ 0.07
SMARCD1-206ENST00000549274 RAPGEF6Q8TEU7 1601 aa15.46■□□□□ 0.06
SMARCD1-206ENST00000549274 UHRF1BP1LA0JNW5 1464 aa15.46■□□□□ 0.06
SMARCD1-206ENST00000549274 VPS8Q8N3P4 1428 aa15.45■□□□□ 0.06
SMARCD1-206ENST00000549274 HECW1Q76N89 1606 aa15.45■□□□□ 0.06
SMARCD1-206ENST00000549274 FYCO1Q9BQS8 1478 aa15.45■□□□□ 0.06
SMARCD1-206ENST00000549274 ABCA8O94911 1581 aa15.45■□□□□ 0.06
SMARCD1-206ENST00000549274 ABCC2Q92887 1545 aa15.43■□□□□ 0.06
SMARCD1-206ENST00000549274 CASKIN1Q8WXD9 1431 aa15.43■□□□□ 0.06
SMARCD1-206ENST00000549274 CCDC18Q5T9S5 1454 aa15.4■□□□□ 0.06
SMARCD1-206ENST00000549274 PCF11O94913 1555 aaKnown RBP15.39■□□□□ 0.05
SMARCD1-206ENST00000549274 TTBK1Q5TCY1 1321 aaPredicted RBP15.39■□□□□ 0.05
SMARCD1-206ENST00000549274 PLB1Q6P1J6 1458 aa15.39■□□□□ 0.05
SMARCD1-206ENST00000549274 NPM1P06748 294 aaKnown RBP eCLIP15.38■□□□□ 0.05
SMARCD1-206ENST00000549274 CYB5RLQ6IPT4 315 aa15.38■□□□□ 0.05
SMARCD1-206ENST00000549274 ADCY10Q96PN6 1610 aa15.37■□□□□ 0.05
SMARCD1-206ENST00000549274 KDM5BQ9UGL1 1544 aa15.35■□□□□ 0.05
SMARCD1-206ENST00000549274 APLP2Q06481 763 aa15.35■□□□□ 0.05
SMARCD1-206ENST00000549274 MAP3K1Q13233 1512 aa15.34■□□□□ 0.05
SMARCD1-206ENST00000549274 CDK11AQ9UQ88 783 aaPredicted RBP15.34■□□□□ 0.05
SMARCD1-206ENST00000549274 NUP153P49790 1475 aaKnown RBP15.33■□□□□ 0.05
SMARCD1-206ENST00000549274 EPRSP07814 1512 aaKnown RBP15.33■□□□□ 0.04
SMARCD1-206ENST00000549274 MSH5O43196 834 aa15.32■□□□□ 0.04
SMARCD1-206ENST00000549274 ATP1B4Q9UN42 357 aaPredicted RBP15.32■□□□□ 0.04
SMARCD1-206ENST00000549274 ZCCHC11Q5TAX3 1644 aaKnown RBP15.32■□□□□ 0.04
SMARCD1-206ENST00000549274 CFAP43Q8NDM7 1665 aa15.3■□□□□ 0.04
SMARCD1-206ENST00000549274 ATP10BO94823 1461 aa15.28■□□□□ 0.04
SMARCD1-206ENST00000549274 MAPKBP1O60336 1514 aa15.27■□□□□ 0.04
SMARCD1-206ENST00000549274 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.27■□□□□ 0.04
SMARCD1-206ENST00000549274 HNRNPUL2Q1KMD3 747 aaKnown RBP15.27■□□□□ 0.04
SMARCD1-206ENST00000549274 TIAM1Q13009 1591 aa15.27■□□□□ 0.03
SMARCD1-206ENST00000549274 LRRIQ1Q96JM4 1722 aa15.26■□□□□ 0.03
SMARCD1-206ENST00000549274 PLEKHD1A6NEE1 506 aa15.25■□□□□ 0.03
SMARCD1-206ENST00000549274 CDK13Q14004 1512 aaKnown RBP15.24■□□□□ 0.03
SMARCD1-206ENST00000549274 EHBP1L1Q8N3D4 1523 aa15.23■□□□□ 0.03
SMARCD1-206ENST00000549274 WDR7Q9Y4E6 1490 aa15.23■□□□□ 0.03
SMARCD1-206ENST00000549274 MTUS2Q5JR59 1369 aa15.23■□□□□ 0.03
SMARCD1-206ENST00000549274 TROQ12816 1431 aaPredicted RBP15.21■□□□□ 0.03
SMARCD1-206ENST00000549274 ASXL2Q76L83 1435 aa15.21■□□□□ 0.03
SMARCD1-206ENST00000549274 KIF14Q15058 1648 aa15.19■□□□□ 0.02
SMARCD1-206ENST00000549274 LRRC9Q6ZRR7 1453 aa15.18■□□□□ 0.02
SMARCD1-206ENST00000549274 SUPT6HQ7KZ85 1726 aaKnown RBP15.17■□□□□ 0.02
SMARCD1-206ENST00000549274 ARID3CA6NKF2 412 aa15.16■□□□□ 0.02
SMARCD1-206ENST00000549274 GLI2P10070 1586 aa15.14■□□□□ 0.01
SMARCD1-206ENST00000549274 ABCC10Q5T3U5 1492 aa15.14■□□□□ 0.01
SMARCD1-206ENST00000549274 DIP2BQ9P265 1576 aa15.11■□□□□ 0.01
SMARCD1-206ENST00000549274 ABCA9Q8IUA7 1624 aa15.11■□□□□ 0.01
SMARCD1-206ENST00000549274 ITSN2Q9NZM3 1697 aa15.11■□□□□ 0.01
SMARCD1-206ENST00000549274 MAGI3Q5TCQ9 1506 aa15.1■□□□□ 0.01
SMARCD1-206ENST00000549274 MYO5CQ9NQX4 1742 aa15.09■□□□□ 0.01
SMARCD1-206ENST00000549274 ARAP3Q8WWN8 1544 aa15.08■□□□□ 0.01
SMARCD1-206ENST00000549274 CFAP74Q9C0B2 1584 aa15.07■□□□□ 0
SMARCD1-206ENST00000549274 KCNH8Q96L42 1107 aa15.07■□□□□ 0
SMARCD1-206ENST00000549274 NCOA2Q15596 1464 aa15.07■□□□□ 0
SMARCD1-206ENST00000549274 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.07■□□□□ 0
SMARCD1-206ENST00000549274 KIF13AQ9H1H9 1805 aa15.06■□□□□ 0
SMARCD1-206ENST00000549274 CCNB3Q8WWL7 1395 aa15.06■□□□□ 0
SMARCD1-206ENST00000549274 MAP3K4Q9Y6R4 1608 aa15.06■□□□□ 0
SMARCD1-206ENST00000549274 KANK4Q5T7N3 995 aaPredicted RBP15.05■□□□□ -0
SMARCD1-206ENST00000549274 PREX2Q70Z35 1606 aa15.04■□□□□ -0
SMARCD1-206ENST00000549274 TEX14Q8IWB6 1497 aa15.04■□□□□ -0
SMARCD1-206ENST00000549274 FAM69CQ0P6D2 419 aa15.04■□□□□ -0
SMARCD1-206ENST00000549274 TTC37Q6PGP7 1564 aa15.03■□□□□ -0
SMARCD1-206ENST00000549274 CD109Q6YHK3 1445 aa15.03■□□□□ -0
SMARCD1-206ENST00000549274 CDC42BPAQ5VT25 1732 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms